RSC Medicinal Chemistry,
Journal Year:
2023,
Volume and Issue:
14(12), P. 2496 - 2508
Published: Jan. 1, 2023
Protein-protein
interactions
(PPIs)
control
many
essential
biological
pathways
which
are
often
misregulated
in
disease.
As
such,
selective
PPI
modulators
desirable
to
unravel
complex
functions
of
PPIs
and
thus
expand
the
repertoire
therapeutic
targets.
However,
large
size
relative
flatness
interfaces
make
them
challenging
molecular
targets
for
conventional
drug
modalities,
rendering
most
"undruggable".
Therefore,
there
is
a
growing
need
discover
innovative
molecules
that
able
modulate
crucial
PPIs.
Peptides
ideal
candidates
deliver
such
therapeutics
attributed
their
ability
closely
mimic
structural
features
protein
interfaces.
inherently
poor
proteolysis
resistance
cell
permeability
inevitably
hamper
biomedical
applications.
The
introduction
constraint
(
Signal Transduction and Targeted Therapy,
Journal Year:
2021,
Volume and Issue:
6(1)
Published: May 31, 2021
Abstract
Due
to
the
advantages
in
efficacy
and
safety
compared
with
traditional
chemotherapy
drugs,
targeted
therapeutic
drugs
have
become
mainstream
cancer
treatments.
Since
first
tyrosine
kinase
inhibitor
imatinib
was
approved
enter
market
by
US
Food
Drug
Administration
(FDA)
2001,
an
increasing
number
of
small-molecule
been
developed
for
treatment
malignancies.
By
December
2020,
89
antitumor
FDA
National
Medical
Products
(NMPA)
China.
Despite
great
progress,
anti-cancer
still
face
many
challenges,
such
as
a
low
response
rate
drug
resistance.
To
better
promote
development
we
conducted
comprehensive
review
according
target
classification.
We
present
all
well
important
candidates
clinical
trials
each
target,
discuss
current
provide
insights
perspectives
research
drugs.
Nature Communications,
Journal Year:
2020,
Volume and Issue:
11(1)
Published: Nov. 18, 2020
Abstract
Severe
Acute
Respiratory
Syndrome
Coronavirus
2
(SARS-CoV-2),
the
pathogen
that
causes
disease
COVID-19,
produces
replicase
polyproteins
1a
and
1ab
contain,
respectively,
11
or
16
nonstructural
proteins
(nsp).
Nsp5
is
main
protease
(M
pro
)
responsible
for
cleavage
at
eleven
positions
along
these
polyproteins,
including
its
own
N-
C-terminal
boundaries,
representing
essential
processing
events
subsequent
viral
assembly
maturation.
We
have
determined
X-ray
crystallographic
structures
of
this
cysteine
in
wild-type
free
active
site
state
1.8
Å
resolution,
acyl-enzyme
intermediate
with
native
autocleavage
sequence
1.95
resolution
product
bound
2.0
by
employing
an
mutation
(C145A).
characterize
stereochemical
features
critical
hydrogen
bonding
distances
underlying
catalysis
Cys/His
dyad
oxyanion
hole.
also
identify
a
highly
ordered
water
molecule
position
compatible
role
as
deacylating
nucleophile
catalytic
mechanism
binding
groove
conformational
changes
dimerization
interface
occur
upon
formation
acyl-enzyme.
Collectively,
snapshots
provide
valuable
mechanistic
structural
insights
future
antiviral
therapeutic
development
revised
molecular
docking
strategies
based
on
M
inhibition.
Frontiers in Cardiovascular Medicine,
Journal Year:
2020,
Volume and Issue:
7
Published: March 10, 2020
Obesity
and
diabetes
are
leading
causes
of
cardiovascular
morbidity
mortality.
Although
extensive
strides
have
been
made
in
the
treatments
for
non-diabetic
atherosclerosis
its
complications,
patients
with
diabetes,
these
therapies
provide
less
benefit
protection
from
disease
(CVD).
These
considerations
spur
concept
that
diabetes-specific,
disease-modifying
essential
to
identify,
especially
as
epidemics
obesity
continue
expand.
Hence,
hyperglycemia
is
a
defining
feature
it
logical
probe
impact
specific
consequences
on
vessel
wall,
immune
cell
perturbation
endothelial
dysfunction
–
all
harbingers
development
CVD.
In
this
context,
high
levels
blood
glucose
stimulate
formation
irreversible
advanced
glycation
end
products,
products
nonenzymatic
oxidation
proteins
lipids.
AGEs
accumulate
diabetic
circulation
tissues
interaction
their
chief
cellular
receptor,
receptor
AGE
or
RAGE,
contributes
vascular
perturbation.
The
cytoplasmic
domain
RAGE
lacks
endogenous
kinase
activity;
discovery
intracellular
binds
formin,
DIAPH1,
DIAPH1
ligand-mediated
signal
transduction,
identifies
means
by
which
functions
highlights
new
target
therapeutic
interruption
signaling.
human
subjects,
prominent
signals
activity
include
presence
two
forms
soluble
sRAGE
secretory
(es)
RAGE.
Further,
genetic
studies
revealed
single
nucleotide
polymorphisms
(SNPs)
AGER
gene
(AGER
encoding
RAGE)
display
associations
This
Review
presents
current
knowledge
regarding
roles
Studies
both
subjects
animal
models
presented
highlight
breadth
evidence
linking
metabolic
disorders.
Natural Product Reports,
Journal Year:
2021,
Volume and Issue:
38(11), P. 2100 - 2129
Published: Jan. 1, 2021
The
continual
growth
of
publicly
available
genomic
databases
offers
researchers
unprecedented
bioinformatic
opportunities.
This
review
examines
different
approaches
to
mining
data
for
the
targeted
discovery
bioactive
natural
products.
Journal of Medicinal Chemistry,
Journal Year:
2023,
Volume and Issue:
66(14), P. 9278 - 9296
Published: July 12, 2023
The
intracellular
interactions
of
biomolecules
can
be
maneuvered
to
redirect
signaling,
reprogram
the
cell
cycle,
or
decrease
infectivity
using
only
a
few
dozen
atoms.
Such
"molecular
glues,"
which
drive
both
novel
and
known
between
protein
partners,
represent
an
enticing
therapeutic
strategy.
Here,
we
review
methods
approaches
that
have
led
identification
small-molecule
molecular
glues.
We
first
classify
current
FDA-approved
glues
facilitate
selection
discovery
methods.
then
survey
two
broad
method
strategies,
where
highlight
importance
factors
such
as
experimental
conditions,
software
packages,
genetic
tools
for
success.
hope
this
curation
methodologies
directed
will
inspire
diverse
research
efforts
targeting
multitude
human
diseases.
ACS Pharmacology & Translational Science,
Journal Year:
2025,
Volume and Issue:
8(3), P. 654 - 672
Published: Feb. 10, 2025
Dysregulation
of
correct
protein
tau
homeostasis
represents
the
seed
for
development
several
devastating
central
nervous
system
disorders,
known
as
tauopathies,
that
affect
millions
people
worldwide.
Despite
massive
public
and
private
support
to
research
funding,
these
diseases
still
represent
unmet
medical
needs.
In
fact,
tau-targeting
tools
developed
date
have
failed
translate
into
clinic.
Recently,
taking
advantage
modes
nature
uses
mediate
flow
information
in
cells,
researchers
a
new
class
molecules,
called
proximity-inducing
modulators,
which
exploit
spatial
proximity
modulate
function(s)
redirect
cellular
processes.
this
perspective,
after
brief
discussion
about
classic
approaches,
we
will
discuss
different
classes
modulators
so
far
highlight
applications
protein's
function
tau-induced
toxicity.
Molecules,
Journal Year:
2020,
Volume and Issue:
25(20), P. 4597 - 4597
Published: Oct. 9, 2020
Studying
disease
models
at
the
molecular
level
is
vital
for
drug
development
in
order
to
improve
treatment
and
prevent
a
wide
range
of
human
pathologies.
Microbial
infections
are
still
major
challenge
because
pathogens
rapidly
continually
evolve
developing
resistance.
Cancer
cells
also
change
genetically,
current
therapeutic
techniques
may
be
(or
become)
ineffective
many
cases.
The
pathology
neurological
diseases
remains
an
enigma,
exact
etiology
underlying
mechanisms
largely
unknown.
Viral
spread
develop
much
more
quickly
than
does
corresponding
research
needed
combat
these
infections;
present
most
relevant
outbreak
SARS-CoV-2,
which
originated
Wuhan,
China,
illustrates
critical
immediate
need
design
techniques.
Modern
day
discovery
time-consuming,
expensive
process.
Each
new
takes
excess
10
years
costs
on
average
billion
US
dollars.
This
demonstrates
complete
redesign
or
novel
strategies.
Nuclear
Magnetic
Resonance
(NMR)
has
played
role
ever
since
its
introduction
several
decades
ago.
In
just
three
decades,
NMR
become
“gold
standard”
platform
technology
medical
pharmacology
studies.
this
review,
we
applications
spectroscopy
development.
basic
concepts,
theories,
commonly
used
presented.
We
summarize
advantages
limitations
primary
methods
Journal of Hematology & Oncology,
Journal Year:
2020,
Volume and Issue:
13(1)
Published: March 30, 2020
Abstract
Protein-protein
interactions
(PPIs)
are
central
to
a
variety
of
biological
processes,
and
their
dysfunction
is
implicated
in
the
pathogenesis
range
human
diseases,
including
cancer.
Hence,
inhibition
PPIs
has
attracted
significant
attention
drug
discovery.
Covalent
inhibitors
have
been
reported
achieve
high
efficiency
through
forming
covalent
bonds
with
cysteine
or
other
nucleophilic
residues
target
protein.
Evidence
suggests
that
there
reduced
risk
for
development
resistance
against
drugs,
which
major
challenge
areas
such
as
oncology
infectious
diseases.
Recent
improvements
structural
biology
chemical
reactivity
enabled
design
potent
selective
PPI
inhibitors.
In
this
review,
we
will
highlight
therapeutic
agents
targeting
cancer
therapy.
Journal of Medicinal Chemistry,
Journal Year:
2020,
Volume and Issue:
64(1), P. 26 - 41
Published: Dec. 21, 2020
Alzheimer's
disease
(AD),
like
other
multifactorial
diseases,
is
the
result
of
a
systemic
breakdown
different
physiological
networks.
As
result,
several
lines
evidence
suggest
that
it
could
be
more
efficiently
tackled
by
molecules
directed
toward
dysregulated
biochemical
targets
or
pathways.
In
this
context,
selection
to
which
new
will
crucial.
For
years,
design
such
multitarget-directed
ligands
(MTDLs)
has
been
based
on
main
involved
in
"cholinergic"
and
"β-amyloid"
hypothesis.
Recently,
there
have
some
reports
MTDLs
targeting
glycogen
synthase
kinase
3β
(GSK-3β)
enzyme,
due
its
appealing
properties.
Indeed,
enzyme
tau
hyperphosphorylation,
controls
multitude
CNS-specific
signaling
pathways,
establishes
strict
connections
with
factors
implicated
AD
pathogenesis.
present
Miniperspective,
we
discuss
reasons
behind
development
GSK-3β-directed
highlight
recent
efforts
obtain
these
classes
as
potential
disease-modifying
agents.
Current Opinion in Structural Biology,
Journal Year:
2022,
Volume and Issue:
74, P. 102370 - 102370
Published: April 8, 2022
Protein-protein
interactions
(PPIs)
govern
numerous
cellular
functions
in
terms
of
signaling,
transport,
defense
and
many
others.
Designing
novel
PPIs
poses
a
fundamental
challenge
to
our
understanding
molecular
interactions.
The
capability
robustly
engineer
has
immense
potential
for
the
development
synthetic
biology
tools
protein-based
therapeutics.
Over
last
decades,
efforts
this
area
have
relied
purely
on
experimental
approaches,
but
more
recently,
computational
protein
design
made
important
contributions.
Template-based
approaches
utilize
known
transplant
critical
residues
onto
heterologous
scaffolds.
De
novo
instead
uses
methods
generate
binding
motifs,
allowing
broader
scope
sites
engaged
targets.
Here,
we
review
successful
cases,
giving
an
overview
methodological
used
templated
de
PPI
design.