Comparative Genomic and Transcriptomic Analysis of Avirulent and Virulent Strains ofFusarium oxysporumf. sp.carthami: Insights into Pathogenesis and Virulence Determinants in Safflower Infections DOI Open Access

Aabha,

Vijay Laxmi, Babita Singh

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Aug. 15, 2023

Abstract Vascular wilt disease incited by Fusarium oxysporum f. sp. carthami (Foc) in Safflower poses a significant threat to its production India. A comprehensive understanding of the molecular underpinning compatible and incompatible interaction is extreme economic importance. In present study, genome virulent (IARI-5175) avirulent (F-00845) Foc strain were sequenced assembled using data generated from Illumina combination with Nanopore technologies HiC. genomes into 88 23 scaffolds an estimated total size 46 Mb 42 respectively for IARI-5175 F-00845 strains. Reference based mapping F. lycopersici (Fol) resulted chromosomal level ordering simultaneous identification accessory genome. Additionally, two lineage specific chromosomes also identified IARI-5175. Genomic comparisons made on basis effectors, CAZymes, secondary metabolites mycotoxins understand global view pathogenicity Foc. Moreover, transcriptome during was analyzed leading differentially regulated genes. Taken together our study laid solid foundation explore novel effector genes that play crucial role establishment can further be used as targets devise new strategies curb safflower.

Language: Английский

Breeding Oilseed Crops for Resistance to Fungal Pathogens Through Genomics-Assisted Breeding DOI
Venkata Ravi Prakash Reddy, Kapil Amarnath, K. Venkataramanamma

et al.

Published: Jan. 1, 2025

Language: Английский

Citations

0
Adaption of Next-Generation Breeding Tools in the Improvement of Minor Oilseed Crops: Status and Prospects DOI

B. Usha Kiran,

D. Shivani,

Divya Ambati

et al.

Published: Jan. 1, 2025

Language: Английский

Citations

0
Genome-wide association analysis using multi model approach identified novel associations for plant architectural traits in chickpea germplasm collection DOI

Rahul Raiya,

Vikash Kumar Yadav,

Kuldeep Kumar

et al.

The Nucleus, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 12, 2025

Language: Английский

Citations

0
Developments on Core Collections of Plant Genetic Resources: Do We Know Enough? DOI Open Access
Rui Gu,

Shaohui Fan,

Songpo Wei

et al.

Forests, Journal Year: 2023, Volume and Issue: 14(5), P. 926 - 926

Published: April 29, 2023

The core collection is a small subset that minimizes genetic redundancy while preserving the maximum diversity of entire population. Research on crucial for efficient management and utilization germplasm resources. In this paper, concept research progress its construction have briefly been summarized. Subsequently, some perspectives proposed in field near future. Four novel opinions presented, (1) effective integration multiple data types accurate phenotyping methods need to be focused on; (2) sampling strategy bioinformatics software should given attention; (3) afforestation tree bamboo species, with wide natural distribution range large planting area, carried out as soon possible; (4) we place high priority study genes discoveries utilize these rapid, precise high-throughput pattern based re-sequencing technology. This paper provides theoretical technological reference further application plant collection.

Language: Английский

Citations

10
Innovative Approaches for Genetic Improvement of Safflower (Carthamus tinctorius L.): Current Status and Prospectus DOI

H. D. Pushpa,

H H KUMARASWAMY,

HELAN BABY THOMAS

et al.

Published: Jan. 1, 2023

Safflower (Carthamus tinctorius L.) is a nutritionally and pharmaceutically important oleaginous crop cultivated for its seed oil. There ever-increasing demand edible oil in the country. However, area under safflower cultivation globally has declined over last decade. Low productivity one of major reasons decline area. The faces several adaptation challenges, which leads to low yield. Advances biotechnology genomics-assisted plant breeding benefited genetic improvement ways. there much scope further deployment innovative approaches idiotype development, quality engineering, adoption changing climate scenarios consumer needs. With this background, an attempt been made chapter comprehend latest works researchers across globe present information systematically thematic pattern. Further, future research direction discussed, particularly highlighting need whole-genome reference sequencing, robust tissue culture transformation protocols, genome editing, metabolomics, transcriptomics. presented useful evolving speed strategies safflower.

Language: Английский

Citations

4
Exploring genetic diversity and ascertaining genetic loci associated with important fruit quality traits in apple (Malus × domestica Borkh.) DOI

Poonam,

Rajnish Sharma, Parul Sharma

et al.

Physiology and Molecular Biology of Plants, Journal Year: 2023, Volume and Issue: 29(11), P. 1693 - 1716

Published: Nov. 1, 2023

Language: Английский

Citations

3
None DOI Creative Commons
Sergei L. Mosyakin, G.V. Boiko, V. P. Hayova

et al.

Ukrainian Botanical Journal, Journal Year: 2023, Volume and Issue: 80(3)

Published: June 30, 2023

Головний редакторСергій Л

Citations

0
An alternative application of some SSR DNA markers in experimental mycology DOI Creative Commons
С.М. Бойко

Ukrainian Botanical Journal, Journal Year: 2023, Volume and Issue: 80(3), P. 283 - 291

Published: June 30, 2023

The expediency of using unique SSR DNA-markers Schizophyllum commune for population genetic assays in various fungal species has been demonstrated. In Auricularia auricula-judae and Irpex lacteus, we observed formation heterogeneous amplicons mostly up to 500 bp length that ensured their high resolution facilitated data analysis. established sets molecular markers are efficient DNA-fingerprinting S. commune, I. A. auricula-judae, as well prospective the genus Pleurotus, but need be further enlarged.

Language: Английский

Citations

0
Comparative Genomic and Transcriptomic Analysis of Avirulent and Virulent Strains ofFusarium oxysporumf. sp.carthami: Insights into Pathogenesis and Virulence Determinants in Safflower Infections DOI Open Access

Aabha,

Vijay Laxmi, Babita Singh

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Aug. 15, 2023

Abstract Vascular wilt disease incited by Fusarium oxysporum f. sp. carthami (Foc) in Safflower poses a significant threat to its production India. A comprehensive understanding of the molecular underpinning compatible and incompatible interaction is extreme economic importance. In present study, genome virulent (IARI-5175) avirulent (F-00845) Foc strain were sequenced assembled using data generated from Illumina combination with Nanopore technologies HiC. genomes into 88 23 scaffolds an estimated total size 46 Mb 42 respectively for IARI-5175 F-00845 strains. Reference based mapping F. lycopersici (Fol) resulted chromosomal level ordering simultaneous identification accessory genome. Additionally, two lineage specific chromosomes also identified IARI-5175. Genomic comparisons made on basis effectors, CAZymes, secondary metabolites mycotoxins understand global view pathogenicity Foc. Moreover, transcriptome during was analyzed leading differentially regulated genes. Taken together our study laid solid foundation explore novel effector genes that play crucial role establishment can further be used as targets devise new strategies curb safflower.

Language: Английский

Citations

0