Frontiers in Plant Science,
Journal Year:
2023,
Volume and Issue:
13
Published: Jan. 5, 2023
Early
leaf
spot
(ELS)
and
late
(LLS)
diseases
are
the
two
most
destructive
groundnut
in
Ghana
resulting
≤
70%
yield
losses
which
is
controlled
largely
by
chemical
method.
To
develop
resistant
varieties,
present
study
was
undertaken
to
identify
single
nucleotide
polymorphism
(SNP)
markers
putative
candidate
genes
underlying
both
ELS
LLS.
In
this
study,
six
multi-locus
models
of
genome-wide
association
were
conducted
with
best
linear
unbiased
predictor
obtained
from
294
African
germplasm
screened
for
LLS
as
well
image-based
indices
severity
2020
2021
8,772
high-quality
SNPs
a
48
K
SNP
array
Axiom
platform.
Ninety-seven
associated
ELS,
five
across
chromosomes
2
sub-genomes.
From
these,
twenty-nine
unique
detected
at
least
one
or
more
traits
16
explained
phenotypic
variation
ranging
0.01
-
62.76%,
exception
chromosome
(Chr)
08
(Chr08),
Chr10,
Chr11,
Chr19.
Seventeen
potential
predicted
±
300
kbp
stable/prominent
positions
(12
5,
down-
upstream,
respectively).
The
results
provide
basis
understanding
genetic
architecture
germplasm,
would
be
valuable
breeding
varieties
upon
further
validation.
Frontiers in Plant Science,
Journal Year:
2023,
Volume and Issue:
13
Published: Jan. 12, 2023
Wheat
is
a
crop
of
historical
significance,
as
it
marks
the
turning
point
human
civilization
10,000
years
ago
with
its
domestication.
Due
to
rapid
increase
in
population,
wheat
production
needs
be
increased
by
50%
2050
and
this
growth
will
mainly
based
on
yield
increases,
there
strong
competition
for
scarce
productive
arable
land
from
other
sectors.
This
increasing
demand
can
further
achieved
using
sustainable
approaches
including
integrated
disease
pest
management,
adaption
warmer
climates,
less
use
water
resources
frequency
abiotic
stress
tolerances.
Out
200
diseases
wheat,
50
cause
economic
losses
are
widely
distributed.
Each
year,
about
20%
lost
due
diseases.
Some
major
rusts,
smut,
tan
spot,
spot
blotch,
fusarium
head
blight,
common
root
rot,
septoria
powdery
mildew,
blast,
several
viral,
nematode,
bacterial
These
badly
impact
mortality
plants.
review
focuses
important
present
United
States,
comprehensive
information
causal
organism,
damage,
symptoms
host
range,
favorable
conditions,
management
strategies.
Furthermore,
genetic
breeding
efforts
control
manage
these
discussed.
A
detailed
description
all
QTLs,
genes
reported
cloned
provided
review.
study
utmost
importance
programs
throughout
world
breed
resistance
under
changing
environmental
conditions.
Plants,
Journal Year:
2024,
Volume and Issue:
13(4), P. 490 - 490
Published: Feb. 8, 2024
Climate
change
disrupts
food
production
in
many
regions
of
the
world.
The
accompanying
extreme
weather
events,
such
as
droughts,
floods,
heat
waves,
and
cold
snaps,
pose
threats
to
crops.
concentration
carbon
dioxide
also
increases
atmosphere.
United
Nations
is
implementing
climate-smart
agriculture
initiative
ensure
security.
An
element
this
project
involves
breeding
climate-resilient
crops
or
plant
cultivars
with
enhanced
resistance
unfavorable
environmental
conditions.
Modern
agriculture,
which
currently
homogeneous,
needs
diversify
species
cultivated
plants.
Plant
programs
should
extensively
incorporate
new
molecular
technologies,
supported
by
development
field
phenotyping
techniques.
Breeders
closely
cooperate
scientists
from
various
fields
science.
Food and Energy Security,
Journal Year:
2025,
Volume and Issue:
14(1)
Published: Jan. 1, 2025
ABSTRACT
Plant
phenomics
deals
with
the
measurement
of
plant
phenotypes
associated
genetic
and
environmental
variation
in
controlled
environment
agriculture
(CEA).
Encompassing
a
spectrum
from
molecular
biology
to
ecosystem‐level
studies,
it
employs
high‐throughput
phenotyping
(HTP)
approaches
quickly
evaluate
characteristics
enhance
yields
crops
smart
facilities.
HTP
uses
parameters
for
accuracy,
such
as
software
sensors,
well
hyperspectral
imaging
pigment
data,
thermal
water
content,
fluorescence
photosynthesis
rates.
They
provide
information
on
growth
kinetics,
physiological
biochemical
characteristics,
genotype–environment
interaction.
Artificial
intelligence
(AI)
machine
learning
(ML)
are
used
large
volume
phenotypic
data
predict
rates,
determine
optimal
time
plants,
or
detect
diseases,
nutrient
deficiencies,
pests
at
an
early
stage.
The
lighting
factories
is
adjusted
based
specific
phase
using
different
light
intensities,
spectrums,
durations
germination,
vegetative
growth,
flowering
stages,
hydroponics
method
providing
nutrients,
CRISPR
(Clustered
Regularly
Interspaced
Short
Palindromic
Repeats)
improving
certain
resistance
drought.
These
systems
crop
production,
yields,
adaptability,
input
use
by
optimizing
utilizing
precision
breeding
techniques.
AI
combination
several
disciplines,
promoting
understanding
plant–environment
interactions
relation
problems
resource
use,
climate
change.
It
affects
their
capacity
develop
that
capture
inputs,
minimize
chemical
application,
resilient
Phenomics
cost‐effective,
reduces
contributes
more
sustainable
agricultural
practices,
being
economically
environmentally
sound.
Altogether,
central
CEA
due
its
capitalize
potential
within
advance
sustainability
food
security.
Through
phenomic
research,
next
advancements
likely
be
even
revolutionary
terms
practices
worldwide.
Scientific Reports,
Journal Year:
2022,
Volume and Issue:
12(1)
Published: Aug. 11, 2022
In
wheat,
a
meta-analysis
was
performed
using
previously
identified
QTLs
associated
with
drought
stress
(DS),
heat
(HS),
salinity
(SS),
water-logging
(WS),
pre-harvest
sprouting
(PHS),
and
aluminium
(AS)
which
predicted
total
of
134
meta-QTLs
(MQTLs)
that
involved
at
least
28
consistent
stable
MQTLs
conferring
tolerance
to
five
or
all
six
abiotic
stresses
under
study.
Seventy-six
out
the
132
physically
anchored
were
also
verified
genome-wide
association
studies.
Around
43%
had
genetic
physical
confidence
intervals
less
than
1
cM
5
Mb,
respectively.
Consequently,
539
genes
in
some
selected
providing
6
stresses.
Comparative
analysis
underlying
four
RNA-seq
based
transcriptomic
datasets
unravelled
189
differentially
expressed
included
11
most
promising
candidate
common
among
different
datasets.
The
promoter
showed
promoters
these
include
many
responsiveness
cis-regulatory
elements,
such
as
ARE,
MBS,
TC-rich
repeats,
As-1
element,
STRE,
LTR,
WRE3,
WUN-motif
others.
Further,
overlapped
34
known
genes.
addition,
numerous
ortho-MQTLs
maize,
rice
genomes
discovered.
These
findings
could
help
fine
mapping
gene
cloning,
well
marker-assisted
breeding
for
multiple
tolerances
wheat.
Journal of Integrative Agriculture,
Journal Year:
2023,
Volume and Issue:
23(6), P. 1787 - 1802
Published: Oct. 18, 2023
Crop
improvement
is
crucial
for
addressing
the
global
challenges
of
food
security
and
sustainable
agriculture.
Recent
advancements
in
high-throughput
phenotyping
technologies
artificial
intelligence
(AI)
have
revolutionized
field,
enabling
rapid
accurate
assessment
crop
traits
on
a
large
scale.
The
integration
AI
machine
learning
algorithms
with
data
has
unlocked
new
opportunities
improvement.
can
analyze
interpret
datasets,
extracting
meaningful
patterns
correlations
between
phenotypic
genetic
factors.
These
potential
to
revolutionize
plant
breeding
programs
by
providing
breeders
efficient
tools
trait
selection,
reducing
time
cost
required
variety
development.
However,
further
research
collaborations
are
needed
overcome
fully
unlock
power
By
leveraging
algorithms,
researchers
efficiently
data,
uncover
complex
patterns,
establish
predictive
models
that
enable
precise
selection
breeding.
aim
this
review
explore
transformative
integrating
will
encompass
an
in-depth
analysis
recent
applications,
highlighting
numerous
benefits
associated
intelligence.
Biology,
Journal Year:
2023,
Volume and Issue:
12(10), P. 1298 - 1298
Published: Sept. 30, 2023
This
review
discusses
the
transformative
potential
of
integrating
multi-omics
data
and
artificial
intelligence
(AI)
in
advancing
horticultural
research,
specifically
plant
phenotyping.
The
traditional
methods
phenotyping,
while
valuable,
are
limited
their
ability
to
capture
complexity
biology.
advent
(meta-)genomics,
(meta-)transcriptomics,
proteomics,
metabolomics
has
provided
an
opportunity
for
a
more
comprehensive
analysis.
AI
machine
learning
(ML)
techniques
can
effectively
handle
volume
data,
providing
meaningful
interpretations
predictions.
Reflecting
multidisciplinary
nature
this
area
review,
readers
will
find
collection
state-of-the-art
solutions
that
key
integration
phenotyping
experiments
horticulture,
including
experimental
design
considerations
with
several
technical
non-technical
challenges,
which
discussed
along
solutions.
future
prospects
include
precision
predictive
breeding,
improved
disease
stress
response
management,
sustainable
crop
exploration
biodiversity.
holds
immense
promise
revolutionizing
research
applications,
heralding
new
era
Molecular Plant,
Journal Year:
2023,
Volume and Issue:
16(10), P. 1590 - 1611
Published: Sept. 7, 2023
Climate
change
poses
daunting
challenges
to
agricultural
production
and
food
security.
Rising
temperatures,
shifting
weather
patterns,
more
frequent
extreme
events
have
already
demonstrated
their
effects
on
local,
regional,
global
systems.
Crop
varieties
that
withstand
climate-related
stresses
are
suitable
for
cultivation
in
innovative
cropping
systems
will
be
crucial
maximize
risk
avoidance,
productivity,
profitability
under
climate-changed
environments.
We
surveyed
588
expert
stakeholders
predict
current
novel
traits
may
essential
future
pearl
millet,
sorghum,
maize,
groundnut,
cowpea,
common
bean
varieties,
particularly
sub-Saharan
Africa.
then
review
the
progress
prospects
breeding
three
prioritized
future-essential
each
of
these
crops.
Experts
most
priorities
remain
important,
but
rates
genetic
gain
must
increase
keep
pace
with
climate
consumer
demands.
Importantly,
predicted
include
targets
also
prioritized;
example,
(1)
optimized
rhizosphere
microbiome,
benefits
P,
N,
water
use
efficiency,
(2)
performance
across
or
specific
systems,
(3)
lower
nighttime
respiration,
(4)
improved
stover
quality,
(5)
increased
early
vigor.
further
discuss
cutting-edge
tools
approaches
discover,
validate,
incorporate
diversity
from
exotic
germplasm
into
populations
unprecedented
precision,
accuracy,
speed.
conclude
greatest
challenge
developing
crop
win
race
between
security
might
our
innovativeness
defining
boldness
breed
tomorrow.
Trends in Plant Science,
Journal Year:
2023,
Volume and Issue:
29(2), P. 130 - 149
Published: Aug. 28, 2023
The
cyber-agricultural
system
(CAS)
represents
an
overarching
framework
of
agriculture
that
leverages
recent
advances
in
ubiquitous
sensing,
artificial
intelligence,
smart
actuators,
and
scalable
cyberinfrastructure
(CI)
both
breeding
production
agriculture.
We
discuss
the
progress
perspective
three
fundamental
components
CAS
-
modeling,
actuation
emerging
concept
agricultural
digital
twins
(DTs).
also
how
CI
is
becoming
a
key
enabler
In
this
review
we
shed
light
on
significance
revolutionizing
crop
by
enhancing
efficiency,
productivity,
sustainability,
resilience
to
changing
climate.
Finally,
identify
underexplored
promising
future
directions
for
research
development.
Horticultural Plant Journal,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Feb. 1, 2024
Advances
in
gene
editing
and
natural
genetic
variability
present
significant
opportunities
to
generate
novel
alleles
select
sources
of
variation
for
horticulture
crop
improvement.
The
improvement
crops
enhance
their
resilience
abiotic
stresses
new
pests
due
climate
change
is
essential
future
food
security.
field
genomics
has
made
strides
over
the
past
few
decades,
enabling
us
sequence
analyze
entire
genomes.
However,
understanding
complex
relationship
between
genes
expression
phenotypes
-
observable
characteristics
an
organism
requires
a
deeper
phenomics.
Phenomics
seeks
link
information
with
biological
processes
environmental
factors
better
understand
traits
diseases.
Recent
breakthroughs
this
include
development
advanced
imaging
technologies,
artificial
intelligence
algorithms,
large-scale
data
analysis
techniques.
These
tools
have
enabled
explore
relationships
genotype,
phenotype,
environment
unprecedented
detail.
This
review
explores
importance
phenotypes.
Integration
efficient
high
throughput
plant
phenotyping
as
well
potential
machine
learning
approaches
genomic
phenomics
trait
discovery.