Genome-Wide in Silico Analysis of the Heat Shock Protein (HSP) Family in Vigna Species: Insights into Molecular Mechanisms of Stress Response DOI Creative Commons

Misha Shahzadi,

Zakia Habib,

Siddra Ijaz

et al.

Phytopathogenomics and Disease Control, Journal Year: 2023, Volume and Issue: 2(2), P. 31 - 39

Published: Dec. 22, 2023

Heat shock proteins, HSPs, are essential for plants to develop defense systems against various abiotic challenges. Vigna species widely grown cash crops in the world. However, some unfavorable environmental conditions hinder growth and production of these crops. It is therefore investigate factors influencing their growth, development, tolerance stress stress-tolerant varieties. Consequently, a comprehensive genome-wide identification study was conducted identify Shock Factor (HSF) genes three genomes employing computational tools. In current study, 43 non-redundant HSP proteins were identified including 17 angularis, 22 radiata, 4 V. ungucuilata. Moreover, subcellular locations predicted, all HSPs found nucleus. The theoretical isoelectric point predicted that most acidic. aliphatic index demonstrated highly thermostable. instability revealed two VangHSP_9 VradHSP_9, considered stable while rest unstable. phylogenetic analysis categorized into major clusters gene structure displayed intronless. This gives novel insight functional characterization plant breeding programs.

Language: Английский

A combination of joint linkage and genome-wide association study reveals putative candidate genes associated with resistance to northern corn leaf blight in tropical maize DOI Creative Commons
Noel Ndlovu, Manje Gowda, Yoseph Beyene

et al.

Frontiers in Plant Science, Journal Year: 2024, Volume and Issue: 15

Published: Oct. 3, 2024

Northern corn leaf blight (NCLB), caused by

Language: Английский

Citations

2
Physiological and Proteomic Analysis of Various Priming on Rice Seed under Chilling Stress DOI Creative Commons
Hua Zhang, Hui Guo,

Guoqing Gao

et al.

Plants, Journal Year: 2024, Volume and Issue: 13(17), P. 2430 - 2430

Published: Aug. 30, 2024

Rice (

Language: Английский

Citations

0
Pan-Genome-Wide Investigation and Co-Expression Network Analysis of HSP20 Gene Family in Maize DOI Open Access
Hengyu Yan, Mulong Du, Jianping Ding

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(21), P. 11550 - 11550

Published: Oct. 27, 2024

Heat shock protein 20 (HSP20) is a diverse and functionally important family that plays crucial role in plants’ tolerance to various abiotic stresses. In this study, we systematically analyzed the structural functional characteristics of HSP20 gene within Zea pan-genome. By identifying 56 pan-genes, revealed variation number these genes across different maize inbreds or relatives. Among those genes, only 31 are present more than 52 Further phylogenetic analysis classified into four major groups (Class A, B, C, D) explored their diversity subcellular localization, physicochemical properties, terminal structures HSP20s. Through collinearity Ka/Ks ratio calculations, found most underwent purifying selection during domestication, although few showed signs positive pressure. Additionally, expression several were significantly upregulated under high temperatures, particularly tassels leaves. Co-expression network enriched GO terms related environmental stress responses, suggesting not play key roles heat but may also be involved regulating other biological processes, such as secondary metabolism developmental processes. These findings expand our understanding functions provide new insights for further research maize’s response mechanisms

Language: Английский

Citations

0
Genome-Wide in Silico Analysis of the Heat Shock Protein (HSP) Family in Vigna Species: Insights into Molecular Mechanisms of Stress Response DOI Creative Commons

Misha Shahzadi,

Zakia Habib,

Siddra Ijaz

et al.

Phytopathogenomics and Disease Control, Journal Year: 2023, Volume and Issue: 2(2), P. 31 - 39

Published: Dec. 22, 2023

Heat shock proteins, HSPs, are essential for plants to develop defense systems against various abiotic challenges. Vigna species widely grown cash crops in the world. However, some unfavorable environmental conditions hinder growth and production of these crops. It is therefore investigate factors influencing their growth, development, tolerance stress stress-tolerant varieties. Consequently, a comprehensive genome-wide identification study was conducted identify Shock Factor (HSF) genes three genomes employing computational tools. In current study, 43 non-redundant HSP proteins were identified including 17 angularis, 22 radiata, 4 V. ungucuilata. Moreover, subcellular locations predicted, all HSPs found nucleus. The theoretical isoelectric point predicted that most acidic. aliphatic index demonstrated highly thermostable. instability revealed two VangHSP_9 VradHSP_9, considered stable while rest unstable. phylogenetic analysis categorized into major clusters gene structure displayed intronless. This gives novel insight functional characterization plant breeding programs.

Language: Английский

Citations

0