International Journal of Quantum Chemistry,
Journal Year:
2023,
Volume and Issue:
123(16)
Published: April 28, 2023
Abstract
The
major
challenges
encountered
by
medical
researchers
in
developing
new
drugs
are
time
consumption,
increased
cost,
establishing
a
safety
profile
for
the
drugs,
poor
solubility,
and
inadequate
experimental
data.
In
its
theoretical
aspects,
chemical
graph
theory
plays
vital
role
drug
design
development
analyzing
structural
parameters
of
molecules.
Topological
indices
aim
at
mathematical
representation
molecular
structure,
which
is
used
to
analyze
effectiveness
enhance
process.
this
study,
we
consider
certain
recently
such
as
dexamethasone,
molnupiravir,
nirmatrelvir,
ivermectin,
ribavirin,
baricitinib,
favipiravir,
duvelisib,
L‐ascorbic
acid,
sofosbuvir,
remdesivir,
pioglitazone
omicron,
delta
other
variants
coronaviruses.
For
these
molecules,
propose
generalized
form
reverse
degree
compute
their
associated
topological
with
limiting
behaviors.
We
undertake
QSPR
study
on
potential
reverse‐degree
using
linear
cubic
regression
models.
New England Journal of Medicine,
Journal Year:
2022,
Volume and Issue:
387(9), P. 790 - 798
Published: Aug. 24, 2022
The
oral
protease
inhibitor
nirmatrelvir
has
shown
substantial
efficacy
in
high-risk,
unvaccinated
patients
infected
with
the
B.1.617.2
(delta)
variant
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2).
Data
regarding
effectiveness
preventing
disease
2019
(Covid-19)
outcomes
from
B.1.1.529
(omicron)
are
limited.We
obtained
data
for
all
members
Clalit
Health
Services
who
were
40
years
age
or
older
at
start
study
period
and
assessed
as
being
eligible
to
receive
therapy
during
omicron
surge.
A
Cox
proportional-hazards
regression
model
time-dependent
covariates
was
used
estimate
association
treatment
hospitalization
death
due
Covid-19,
adjustment
sociodemographic
factors,
coexisting
conditions,
previous
SARS-CoV-2
immunity
status.A
total
109,254
met
eligibility
criteria,
whom
3902
(4%)
received
period.
Among
65
older,
rate
Covid-19
14.7
cases
per
100,000
person-days
among
treated
compared
58.9
untreated
(adjusted
hazard
ratio,
0.27;
95%
confidence
interval
[CI],
0.15
0.49).
adjusted
ratio
0.21
(95%
CI,
0.05
0.82).
64
age,
15.2
15.8
0.74;
0.35
1.58).
1.32
0.16
10.75).Among
rates
significantly
lower
those
than
did
not.
No
evidence
benefit
found
younger
adults.
Drugs,
Journal Year:
2022,
Volume and Issue:
82(5), P. 585 - 591
Published: March 19, 2022
Nirmatrelvir
plus
ritonavir
(Paxlovid™;
Pfizer)
is
a
co-packaged
combination
of
nirmatrelvir
and
tablets,
intended
for
co-administration
developed
the
treatment
post-exposure
prophylaxis
coronavirus
disease
2019
(COVID-19).
peptidomimetic
inhibitor
severe
acute
respiratory
syndrome
2
(SARS-CoV-2)
main
protease,
while
human
immunodeficiency
virus
type
1
(HIV-1)
protease
CYP3A
inhibitor.
received
its
first
conditional
authorization
in
December
2021
United
Kingdom,
COVID-19
adults
who
do
not
require
supplemental
oxygen
are
at
increased
risk
progression
to
COVID-19.
In
January
2022,
EU
use
same
indication.
authorized
emergency
USA.
This
article
summarizes
milestones
development
leading
authorizations
approval
Viruses,
Journal Year:
2023,
Volume and Issue:
15(1), P. 167 - 167
Published: Jan. 5, 2023
The
COVID-19
pandemic
has
created
significant
concern
for
everyone.
Recent
data
from
many
worldwide
reports
suggest
that
most
infections
are
caused
by
the
Omicron
variant
and
its
sub-lineages,
dominating
all
previously
emerged
variants.
numerous
mutations
in
Omicron’s
viral
genome
sub-lineages
attribute
it
a
larger
amount
of
fitness,
owing
to
alteration
transmission
pathophysiology
virus.
With
rapid
change
structure,
sub-variants,
namely
BA.1,
BA.2,
BA.3,
BA.4,
BA.5,
dominate
community
with
an
ability
escape
neutralization
efficiency
induced
prior
vaccination
or
infections.
Similarly,
several
recombinant
sub-variants
Omicron,
XBB,
XBD,
XBF,
etc.,
have
emerged,
which
better
understanding.
This
review
mainly
entails
changes
due
having
higher
number
mutations.
binding
affinity,
cellular
entry,
disease
severity,
infection
rates,
importantly,
immune
evading
potential
them
discussed
this
review.
A
comparative
analysis
Delta
other
variants
evolved
before
gives
readers
in-depth
understanding
landscape
infection.
Furthermore,
discusses
range
abilities
possessed
approved
antiviral
therapeutic
molecules
neutralizing
antibodies
functional
against
sub-variants.
evolution
is
causing
infections,
but
broader
aspect
their
not
been
explored.
Thus,
scientific
should
adopt
elucidative
approach
obtain
clear
idea
about
recently
including
variants,
so
effective
vaccines
drugs
can
be
achieved.
This,
turn,
will
lead
drop
cases
and,
finally,
end
pandemic.
Journal of Virology,
Journal Year:
2022,
Volume and Issue:
96(6)
Published: Feb. 28, 2022
Emerging
strains
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2),
the
causative
agent
disease
2019
(COVID-19)
pandemic,
that
show
increased
transmission
fitness
and/or
immune
evasion
are
classified
as
"variants
concern"
(VOCs).
Recently,
a
SARS-CoV-2
variant
first
identified
in
November
2021
South
Africa
has
been
recognized
fifth
VOC,
termed
"Omicron."
What
makes
this
VOC
so
alarming
is
high
number
changes,
especially
viral
Spike
protein,
and
accumulating
evidence
for
efficiency
escape
from
neutralizing
antibodies.
In
an
amazingly
short
time,
Omicron
outcompeted
previously
dominating
Delta
VOC.
However,
it
seems
overall
less
pathogenic
than
other
VOCs.
Here,
we
provide
overview
mutations
genome
resulting
changes
proteins
compared
to
discuss
their
potential
functional
consequences.
Journal of Biological Chemistry,
Journal Year:
2022,
Volume and Issue:
298(6), P. 101972 - 101972
Published: April 22, 2022
The
COVID-19
pandemic
continues
to
be
a
public
health
threat
with
emerging
variants
of
SARS-CoV-2.
Nirmatrelvir
(PF-07321332)
is
reversible,
covalent
inhibitor
targeting
the
main
protease
(Mpro)
SARS-CoV-2
and
active
in
PAXLOVID
(nirmatrelvir
tablets
ritonavir
tablets).
However,
efficacy
nirmatrelvir
underdetermined
against
evolving
variants.
Here,
we
evaluated
vitro
catalytic
activity
potency
Mpro
prevalent
concern
(VOCs)
or
interest
(VOIs):
Alpha
(α,
B.1.1.7),
Beta
(β,
B.1.351),
Delta
(δ,
B1.617.2),
Gamma
(γ,
P.1),
Lambda
(λ,
B.1.1.1.37/C37),
Omicron
(ο,
B.1.1.529),
as
well
original
Washington
wildtype
strain.
These
VOCs/VOIs
carry
mutations
at
varying
frequencies
specifically
for
α,
β,
γ
(K90R),
λ
(G15S),
ο
(P132H).
In
biochemical
enzymatic
assay
characterization
enzyme
kinetics
mutant
Mpros
demonstrates
that
they
are
catalytically
comparable
wildtype.
We
found
has
similar
each
including
P132H
observed
variant
Ki
0.635
nM
compared
0.933
molecular
basis
these
observations
were
provided
by
solution-phase
structural
dynamics
determination
bound
ο,
λ,
β
1.63
2.09
Å
resolution.
data
suggest
potential
maintain
plasma
concentrations
many-fold
times
higher
than
amount
required
stop
VOC/VOI,
Omicron,
from
replicating
cells.
The
SARS-CoV-2
main
protease
(3CLpro)
has
an
indispensable
role
in
the
viral
life
cycle
and
is
a
therapeutic
target
for
treatment
of
COVID-19.
potential
3CLpro-inhibitors
to
select
drug-resistant
variants
needs
be
established.
Therefore,
was
passaged
vitro
presence
increasing
concentrations
ALG-097161,
probe
compound
designed
context
3CLpro
drug
discovery
program.
We
identified
combination
amino
acid
substitutions
(L50F
E166A
L167F)
that
associated
with
>20×
increase
50%
effective
concentration
(EC50)
values
nirmatrelvir
(PF-07321332),
PF-00835231,
ensitrelvir.
While
two
single
(E166A
provide
low-level
resistance
inhibitors
biochemical
assay,
triple
mutant
results
highest
levels
(6×
72×).
All
are
significant
loss
enzymatic
activity,
suggesting
reduction
fitness.
Structural
biology
analysis
indicates
different
reduce
number
inhibitor/enzyme
interactions
while
binding
substrate
maintained.
These
observations
will
important
interpretation
development
clinical
setting.
IMPORTANCE
Paxlovid
first
oral
antiviral
approved
infection.
Antiviral
treatments
often
viruses.
In
order
guide
use
novel
antivirals,
it
essential
understand
risk
characterize
changes
genes
proteins.
this
work,
we
describe
time
pathway
allows
develop
against
vitro.
characteristics
may
predictive
situation.
our
work
management
COVID-19
next-generation
inhibitors.
Signal Transduction and Targeted Therapy,
Journal Year:
2022,
Volume and Issue:
7(1)
Published: June 28, 2022
Abstract
The
persistent
COVID-19
pandemic
since
2020
has
brought
an
enormous
public
health
burden
to
the
global
society
and
is
accompanied
by
various
evolution
of
virus
genome.
consistently
emerging
SARS-CoV-2
variants
harboring
critical
mutations
impact
molecular
characteristics
viral
proteins
display
heterogeneous
behaviors
in
immune
evasion,
transmissibility,
clinical
manifestation
during
infection,
which
differ
each
strain
endow
them
with
distinguished
features
populational
spread.
Several
variants,
identified
as
Variants
Concern
(VOC)
World
Health
Organization,
challenged
efforts
on
control
due
rapid
worldwide
spread
enhanced
evasion
from
current
antibodies
vaccines.
Moreover,
recent
Omicron
variant
even
exacerbated
anxiety
continuous
pandemic.
Its
significant
medical
treatment
disease
highlights
necessity
combinatory
investigation
mutational
pattern
influence
dynamics
against
immunity,
would
greatly
facilitate
drug
vaccine
development
benefit
policymaking.
Hence
this
review,
we
summarized
characteristics,
impacts
focused
parallel
comparison
different
profile,
transmissibility
tropism
alteration,
effectiveness,
manifestations,
order
provide
a
comprehensive
landscape
for
research.