Systematic bioprospection for cellulolytic actinomycetes in the Chihuahuan Desert: isolation and enzymatic profiling DOI Creative Commons

Janneth Escudero-Agudelo,

Juan Manuel Martínez-Villalobos,

Hector Fernando Arocha-Garza

et al.

PeerJ, Journal Year: 2023, Volume and Issue: 11, P. e16119 - e16119

Published: Sept. 28, 2023

The quest for microbial cellulases has intensified as a response to global challenges in biofuel production. efficient deconstruction of lignocellulosic biomass holds promise generating valuable products various industries such food, textile, and detergents. This article presents systematic bioprospection aimed at isolating actinomycetes with exceptional cellulose capabilities. Our methodology explored the biodiverse oligotrophic region Cuatro Cienegas, Coahuila, within Chihuahuan Desert. Among evaluated collection, 78% exhibited cellulolytic activity. Through meticulous screening process based on enzymatic index evaluation, we identified highly Streptomyces strain further investigation. Submerged fermentation this revealed an endoglucanase activity 149 U/mg. Genomic analysis sp. STCH565-A unique configurations carbohydrate-active enzyme (CAZyme) genes, underscoring its potential bioconversion applications. These findings not only highlight significance Desert rich source microorganisms but also offer insights into exploration selection high-performing application diverse environmental contexts. In conclusion, our bioprospecting study lays foundation harnessing from Desert, implications advancing processes industries. can serve blueprint future efforts different regions, facilitating targeted discovery cellulosic

Language: Английский

Marine bacteria and omic approaches: A novel and potential repository for bioremediation assessment DOI
Shahnawaz Hassan,

Sabreena,

Zulaykha Khurshid

et al.

Journal of Applied Microbiology, Journal Year: 2022, Volume and Issue: 133(4), P. 2299 - 2313

Published: July 12, 2022

Marine environments accommodating diverse assortments of life constitute a great pool differentiated natural resources. The cumulative need to remedy unpropitious effects anthropogenic activities on estuaries and coastal marine ecosystems has propelled the development effective bioremediation strategies. bacteria producing biosurfactants are promising agents for bio-remediating oil pollution in environments, making them prospective candidates enhancing recovery. Molecular omics technologies considered an emerging field research ecological diversity assessment owing their utility environmental surveillance polluted sites. A thorough literature review was undertaken understand applicability different omic techniques used using bacteria. This further establishes that pollutants (i.e. heavy metals, hydrocarbons, xenobiotic numerous recalcitrant compounds), organisms isolated from can be better removal. survey shows approaches provide exemplary knowledge about microbial communities role pollutants. centres applications enhanced bioremediation, vital biological contrivance monitoring tackle degradation. paper aims identify gaps investigations involving help researchers, ecologists decision-makers develop holistic understanding regarding assessment.

Language: Английский

Citations

25
Prospects of advanced metagenomics and meta-omics in the investigation of phytomicrobiome to forecast beneficial and pathogenic response DOI
Atif Khurshid Wani, Nahid Akhtar, Reena Singh

et al.

Molecular Biology Reports, Journal Year: 2022, Volume and Issue: 49(12), P. 12165 - 12179

Published: Sept. 28, 2022

Language: Английский

Citations

23
Metagenomics: an emerging tool for the chemistry of environmental remediation DOI Creative Commons
Nnanake‐Abasi O. Offiong, John B. Edet, Solomon E. Shaibu

et al.

Frontiers in Environmental Chemistry, Journal Year: 2023, Volume and Issue: 4

Published: May 9, 2023

Metagenomics is the study of genetic information, including sequences and genomes microorganisms present in an environment. Since 1998, full-scale application this technique to environmental chemistry has brought significant advances characterization nature chemical composition/distribution contaminants matrices contaminated and/or remediated sites. This been critical selection contributed significantly success biological treatment over years. gone through different phases development, which ranges from initial sequencing strategies next-generation (NGS), a recently developed technology obtain more robust deoxyribonucleic acid (DNA) profile devoid chimeric reduces quality metagenomic data. Therefore, objective review evaluate applications metagenomics understanding dynamics during remediation studies. Also, presents relationship between characteristics properties compounds, forms basis bioremediation could be useful developing predictive models that enhance efficiency. In conclusion, techniques have improved characterisation environment provides correlation for prediction type contaminant expected various matrices.

Language: Английский

Citations

13
Contribution of yeast and its biomass for the preparation of industrially essential materials: A boon to circular economy DOI
Atif Khurshid Wani, Farida Rahayu, Ita Yustina

et al.

Bioresource Technology Reports, Journal Year: 2023, Volume and Issue: 23, P. 101508 - 101508

Published: June 16, 2023

Language: Английский

Citations

11
Multi-omics and advance technologies in biodegradation of emerging contaminants and eco-estrogens in environmental waste DOI

Manan Kaur Ghai,

Annu Khatri,

Krishan Kumar

et al.

Total Environment Advances, Journal Year: 2024, Volume and Issue: 11, P. 200113 - 200113

Published: Aug. 16, 2024

Language: Английский

Citations

4
The Interaction Among Rhizosphere Soil Nutrients, Metabolites, and Microbes Determines the Productivity of Perennial Cultivated Grassland in Qinghai‐Tibet Plateau DOI Creative Commons

Xiaofang Zhang,

Yuzhen Liu,

Quan Cao

et al.

Ecology and Evolution, Journal Year: 2025, Volume and Issue: 15(4)

Published: April 1, 2025

ABSTRACT The rhizosphere, as the primary site of plant–soil –microbe interactions, plays an important role in plant productivity. influence species on rhizosphere soil properties and how this shapes productivity grassland ecosystems remains poorly understood. Therefore, study analyzed changes bacterial community structure metabolites perennial cultivated grassland. aim was to elucidate pathways underlying mechanisms by which physicochemical properties, structure, Taking monocropping grasslands established with three common grass from Qinghai –Tibet Plateau research objects, a comprehensive conducted using replicated field trials. Rhizosphere samples were collected Elymus breviaristatus , Festuca sinensis Poa pratensis . results indicated significant differences productivity, diversity, among grasslands. Among them, ANPP (589.17 g·m −2 ), root biomass (3601.67 moisture (18.15%) Verrucomicrobiota (3.60%) are higher than those while relative abundance Firmicutes (0.82%) is lower that topological characteristics networks varied different species. abundances consisting phenylalanine, proline, raffinose, maltotriose, uridine, 2‐methylbenzaldehyde differed treatments. Pathway analysis highlighted upregulation ABC transporters pyrimidine metabolism compared Moreover, secreted more prevents recruitment pathogenic bacteria (such ) promotes thus improving These findings show around Lake result interaction nutrients, metabolites, microorganisms. From ecological point view, conducive improvement forage yield restoration degraded

Language: Английский

Citations

0
Unraveling the genetic traits and functional diversity of the pan-genome in Pantoea dispersa DOI Creative Commons

Shiyao He,

Qi Ding, Wenting Wu

et al.

BMC Genomics, Journal Year: 2025, Volume and Issue: 26(1)

Published: May 2, 2025

Medical devices are crucial in modern healthcare, but commonly used clinical tools such as cotton swabs can be easily contaminated by microorganisms (such Pantoea), becoming vectors for pathogens and leading to patient infections or more severe outcomes. Despite the dual nature of Pantoea that has garnered significant attention, research investigating dispersa (P. dispersa) remains limited. This study conducted a pan-genome analysis three isolates 57 P. strains from NCBI investigate their evolutionary relationships, population structure, functional characteristics. Whole-genome revealed high genomic diversity among 60 dispersa, identifying 6,791 orthologous gene clusters (OGs), with core genes accounting 45.1% accessory 54.9%. Additionally, 2,185 were not annotated reference genome. Further demonstrated 782 406 VFs unevenly distributed different primarily associated nutritional metabolic factors, motility, immune modulation. also identified four related type III secretion system (T3SS) observed some present only specific genetic clusters. In antibiotic resistance (ARGs), 12 ARGs identified, nine being highly conserved across all isolates, mechanisms involved efflux target alteration. Secondary metabolite 289 clusters, 23 matching known while rest new discoveries, including arylpolyene, NRPS, terpene types. These results reveal complex virulence factors (VFs) secondary providing insights into its biological significance. provides first framework along map VFs, ARGs, deep insight potential significance offering valuable references leveraging unique strain characteristics capabilities industrial production therapy.

Language: Английский

Citations

0
Role of microbial enzymes in the degradation of plastics DOI
H.K.S. De Zoysa, G.G.N. Thushari, N.P.P. Liyanage

et al.

Elsevier eBooks, Journal Year: 2025, Volume and Issue: unknown, P. 299 - 322

Published: Jan. 1, 2025

Language: Английский

Citations

0
Environmental and toxicological concerns associated with nanomaterials used in the industries DOI
Tahir ul Gani Mir, Vaidehi Katoch, Ruby Angurana

et al.

Elsevier eBooks, Journal Year: 2023, Volume and Issue: unknown, P. 141 - 193

Published: Jan. 1, 2023

Language: Английский

Citations

9
Exploring the world hot springs: A bibliometric analysis of global trends in metagenomics research DOI Creative Commons
Atif Khurshid Wani, Tahir ul Gani Mir, Nahid Akhtar

et al.

Current Research in Biotechnology, Journal Year: 2023, Volume and Issue: 6, P. 100161 - 100161

Published: Jan. 1, 2023

The aim of the present study is to utilize bibliometric analytical tools examine trends in research publications within hot spring metagenomics field. To achieve this, an in-depth exploration Scopus and Web Science (WoS) databases was undertaken recognize scholarly articles this domain that were published from 2005-2022. As a result, dataset consisting 377 obtained. VOSviewer, RStudio, MS Excel, Access utilized investigate annual publication trend, most productive journals, organizations/authors/countries, authorship citation patterns, cited documents/articles, co-occurrence keywords. According findings, initial article related 2005. At end 2010, number merely 27. However, since then, there has been significant rise yearly publications, post-2010, more than 20 have every year. countries with highest output field 2005 2022 United States, India, China, Japan. Montana State university, University Nevada, Pennsylvania University, Bigelow laboratory for ocean sciences all US active organizations working authors who citations, Ward M. having 1202 Bryant A. 1173, also greatest total link strength (TLS) 643 653, respectively. Around 11.40 % across various sources journals contributed by Frontiers Microbiology, which had publications. Bryant's article, 2007 journal, about phototrophic microbial mats alkaline siliceous springs, score 292 as 2022. This provides comprehensive overview landscape identify trends, knowledge gaps information could be used researchers, policymakers, other stakeholders make informed decisions future directions priorities metagenomics.

Language: Английский

Citations

8