ACS Omega,
Journal Year:
2024,
Volume and Issue:
9(41), P. 42227 - 42244
Published: Oct. 4, 2024
Neuroblastoma
(NB)
is
a
rare
and
malignant
pediatric
solid
tumor.
Due
to
its
heterogeneity,
it
poses
significant
challenges
for
treatment,
resulting
in
high
mortality
rate.
This
study
aimed
identify
new
therapeutic
drugs
by
modeling
the
TrkB
receptor
from
PDB
4AT5
conducting
virtual
screening
of
compounds
YaTCM
database
(containing
47,696
derived
6220
Traditional
Chinese
Medicines).
The
utilized
E-pharmacophore
approach
select
with
potential
binding
affinity
TrkB.
abilities
these
were
tested
through
molecular
dynamics
simulations,
stretch
US
simulations.
Among
top
11
optimized
hit
compounds,
DHPA
3″-demethylhexahydrocurcumin
are
prominent.
Further
simulations
reveal
that
they
form
stable
receptor-ligand
binary
complexes
In
subsequent
vitro
cell
experiments,
eliminated
due
IC
Results in Engineering,
Journal Year:
2024,
Volume and Issue:
21, P. 102020 - 102020
Published: March 1, 2024
This
study
investigated
the
adsorption
of
Diazinon
on
α
and
β-Cyclodextrins
(CDs)
through
Molecular
Dynamics
Simulations.
The
entrance
point
variation
in
diazinon
is
analyzed,
revealing
distinct
preferences
for
entry
into
β-CDs.
center
mass
distance
CDs
investigated,
highlighting
dynamic
behavior
within
β-CD.
Interaction
energies
between
diazinon,
CD,
water
are
explored,
emphasizing
significance
van
der
Waals
interactions
adsorption.
Hydrogen
bonding
analysis
reveals
preferential
α-CD,
attributed
to
number
arrangement
hydrogen
bonds.
Free
energy
calculations
using
Bennett
acceptance
ratio
method
indicate
a
stronger
affinity
supported
by
molecular
electrostatic
potential
maps.
also
examines
hydration
capacity
molecules'
distribution,
indicating
differences
Radial
distribution
function
(RDF)
illustrates
process,
molecule
expulsion
upon
entry.
Structural
stability
assessed
root
mean
squared
deviation,
equilibrium
attainment.
Gibbs
free
suggest
hydrophobic
α-CD
cavity.
comprehensive
contributes
valuable
insights
MD
diazinon-CDs
interactions,
shedding
light
their
mechanisms
applications
wastewater
treatment.
Computational and Structural Biotechnology Journal,
Journal Year:
2024,
Volume and Issue:
23, P. 2964 - 2977
Published: July 6, 2024
Artificial
Intelligence
is
transforming
drug
discovery,
particularly
in
the
hit
identification
phase
of
therapeutic
compounds.
One
tool
that
has
been
instrumental
this
transformation
Quantitative
Structure-Activity
Relationship
(QSAR)
analysis.
This
computer-aided
design
uses
machine
learning
to
predict
biological
activity
new
compounds
based
on
numerical
representation
chemical
structures
against
various
targets.
With
diabetes
mellitus
becoming
a
significant
health
challenge
recent
times,
there
intense
research
interest
modulating
antidiabetic
α-Glucosidase
an
target
gained
attention
due
its
ability
suppress
postprandial
hyperglycaemia,
key
contributor
diabetic
complications.
review
explored
detailed
approach
developing
QSAR
models,
focusing
strategies
for
generating
input
variables
(molecular
descriptors)
and
computational
approaches
ranging
from
classical
algorithms
modern
deep
algorithms.
We
also
highlighted
studies
have
used
these
develop
predictive
models
α-glucosidase
inhibitors
modulate
critical
target.
Advances in medical technologies and clinical practice book series,
Journal Year:
2024,
Volume and Issue:
unknown, P. 42 - 86
Published: April 26, 2024
Addressing
the
critical
challenge
of
lengthy
and
costly
drug
development,
this
chapter
illuminates
transformative
role
advanced
artificial
intelligence
(AI)
in
discovery.
It
aims
to
dissect
impact
AI
methodologies
streamlining
these
traditionally
complex
processes.
This
begins
by
highlighting
inefficiencies
conventional
discovery
methods,
emphasizing
their
resource-intensive
nature.
An
in-depth
discussion
how
technologies
are
revolutionizing
identification
novel
targets,
optimizing
molecular
structures
candidates,
accurately
predicting
efficacy
toxicity
is
needed.
exploration
underscores
AI's
dual
advantages:
significantly
reducing
development
timelines
expenses
while
simultaneously
enhancing
precision
predictions,
leading
safer
more
effective
drugs.
concludes
with
a
vision
future
where
AI-driven
methods
fully
integrated
personalized
medicine
genomics,
signaling
onset
new
era
healthcare
therapeutic
innovation.
Ankara Universitesi Eczacilik Fakultesi Dergisi,
Journal Year:
2025,
Volume and Issue:
49(1), P. 4 - 4
Published: Jan. 13, 2025
Objective:
This
study
includes
the
investigation
of
antimicrobial
potential
a
series
compounds
designed
by
hybridization
thiazole,
hydrazone
and
pyrazole
systems
identified
as
moieties
in
literature.
The
aim
was
to
filter
with
drugability
parameters,
synthesize
selected
test
their
antibacterial
silico
vitro.
Material
Method:
properties
synthesized
were
determined
online
scanners
effects
on
E.
coli
S.
aureus
strains
disk
diffusion
method.
Also,
Autodock
4.2
software
used
determine
inhibitory
against
dihydrofolate
reductase
(DHFR)
enzyme.
Result
Discussion:
In
our
study,
among
newly
hydrazone-linked
pyrazole-thiazole
compounds,
according
parameters
(17a-c)
high
efficiency.
Among
tested
for
activity,
Compound
17c
formed
zone
diameter
8
mm
strain
9
at
concentration
80
μg/ml.
compound
7
40
Furthermore,
ADMET
profiles
presented
indicate
that
they
may
have
suitable
agents.
ChemistrySelect,
Journal Year:
2025,
Volume and Issue:
10(8)
Published: Feb. 1, 2025
Abstract
This
study
carried
out
quantum
chemical
calculations
and
molecular
modeling
studies
of
five
diimine‐dioxime
molecules
(1–5).
The
optimized
geometries,
HOMOs–LUMOs
electrostatic
potential
(MEP)
diagrams
the
were
calculated
at
DFT/B3LYP/6–311G(d,p)
level
theory.
global
reactivity
parameters
revealed
that
hardest
most
stable
molecule
is
1
(
η
=
1.897
eV),
while
softest
chemically
reactive
2
S
1.621
eV
−1
).
All
compounds
in
silico
ADMET
drug‐likeness
generally
within
acceptable
limits
all
except
3
considered
to
have
good
oral
bioavailability.
Molecular
docking
also
performed
using
VEGFR2
(PDB
ID:
2XIR)
EGFR
1M17)
proteins
predict
anticancer
properties
molecules.
binding
energies
obtained
between
−7.8
−9.7
kcal/mol.
behavior
2–2XIR
complex
with
best
energy
value
kcal/mol
under
physiological
conditions
was
by
dynamics
(MD)
simulation
for
100
ns.
RMSD,
RMSF,
SASA,
Rg,
hydrogen
bonding
MD
confirmed
conformational
stability
complex.
results
indicated
has
contribute
on
discovering
new
agents.