bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 22, 2024
Understanding
how
collective
neuronal
activity
in
the
brain
orchestrates
behavior
is
a
central
question
integrative
neuroscience.
Addressing
this
requires
models
that
can
offer
unified
interpretation
of
multimodal
data.
In
study,
we
jointly
examine
video-recordings
zebrafish
larvae
freely
exploring
their
environment
and
calcium
imaging
Anterior
Rhombencephalic
Turning
Region
(ARTR)
circuit,
which
known
to
control
swimming
orientation,
recorded
vivo
under
tethered
conditions.
We
show
both
behavioral
neural
data
be
accurately
modeled
using
Hidden
Markov
Model
(HMM)
with
three
hidden
states.
context
behavior,
states
correspond
leftward,
rightward,
forward
swimming.
The
HMM
robustly
captures
key
statistical
features
motion,
including
bout-type
persistence
its
dependence
on
bath
temperature,
while
also
revealing
inter-individual
phenotypic
variability.
For
data,
left-
right-lateral
activation
ARTR
govern
selection
left
vs.
right
reorientation,
balanced
state,
likely
corresponds
state.
To
further
unify
two
analysis,
exploit
generative
nature
HMM,
sequences
generate
synthetic
trajectories
whose
properties
are
similar
Overall,
work
demonstrates
state-space
used
link
providing
insights
into
mechanisms
self-generated
action.
Frontiers in Behavioral Neuroscience,
Journal Year:
2023,
Volume and Issue:
17
Published: June 22, 2023
The
low
replicability
of
scientific
studies
has
become
an
important
issue.
One
possible
cause
is
representativeness
the
experimental
design
employed.
Already
in
1950’s,
Egon
Brunswick
pointed
out
that
setups
ideally
should
be
based
on
a
random
sample
stimuli
from
subjects’
natural
environment
or
at
least
include
basic
features
environment.
Only
designs
satisfying
this
criterion,
representative
Brunswikian
terminology,
can
produce
results
generalizable
beyond
procedure
used
and
to
situations
outside
laboratory.
Such
external
validity
crucial
preclinical
drug
studies,
for
example,
general.
Popular
rodent
research
non-human
animals,
like
tail
suspension
test
Geller-Seifter
procedure,
do
not
correspond
contexts
likely
encountered
animals’
habitat.
Consequently,
obtained
kind
procedures
generalized
neither
other
nor
Furthermore,
many
traditional
are
incompatible
with
current
notions
animal
welfare.
An
approximation
social
physical
context
provided
laboratory,
form
seminatural
In
addition
satisfy
demands
design,
such
environments
offer
far
higher
level
welfare
than
typical
small
cages.
This
perspective
article
will
briefly
discuss
principles
generalizability
results,
virtues
coincidence
enhanced
quality
by
design.
Persistent
internal
states
are
important
for
maintaining
survival-promoting
behaviors,
such
as
aggression.
In
female
Drosophila
melanogaster
,
we
have
previously
shown
that
individually
activating
either
aIPg
or
pC1d
cell
types
can
induce
Here
investigate
further
the
individual
roles
of
these
cholinergic,
sexually
dimorphic
types,
and
reciprocal
connections
between
them,
in
generating
a
persistent
aggressive
state.
We
find
brief
30-second
optogenetic
stimulation
neurons
was
sufficient
to
promote
an
state
lasting
at
least
10
minutes,
whereas
similar
did
not.
While
showed
pC1e
alone
does
not
evoke
aggression,
behavior
could
be
promoted
through
simultaneous
pC1e,
suggesting
unexpected
synergy
establishing
Neither
nor
show
neuronal
activity
themselves,
implying
is
maintained
by
other
mechanisms.
Moreover,
inactivation
significantly
reduce
aIPg-evoked
aggression
arguing
depend
on
pC1d-aIPg
recurrent
connectivity.
Our
results
suggest
need
alternative
models
explain
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 29, 2024
Animal
behaviour
is
shaped
to
a
large
degree
by
internal
cognitive
states,
but
it
unknown
whether
these
states
are
similar
across
species.
To
address
this
question,
we
developed
virtual
reality
setup
in
which
mice
and
macaques
engage
the
same
naturalistic
visual
foraging
task.
We
exploited
richness
of
wide
range
facial
features
extracted
from
video
recordings
during
task,
train
Markov-Switching
Linear
Regression
(MSLR).
By
doing
so,
identified,
on
single-trial
basis,
set
that
reliably
predicted
when
animals
were
going
react
presented
stimuli.
Even
though
model
was
trained
purely
reaction
times,
could
also
predict
task
outcome,
supporting
behavioural
relevance
inferred
states.
The
identified
comparable
between
monkeys.
Furthermore,
each
state
corresponded
characteristic
pattern
features,
highlighting
importance
expressions
as
manifestations
Current Opinion in Neurobiology,
Journal Year:
2024,
Volume and Issue:
86, P. 102871 - 102871
Published: April 3, 2024
Understanding
how
subjects
perceive
sensory
stimuli
in
their
environment
and
use
this
information
to
guide
appropriate
actions
is
a
major
challenge
neuroscience.
To
study
perceptual
decision-making
animals,
researchers
tasks
that
either
probe
spontaneous
responses
(often
described
as
"naturalistic")
or
train
animals
associate
with
experimenter-defined
responses.
Spontaneous
decisions
rely
on
animals'
pre-existing
knowledge,
while
trained
offer
greater
versatility,
albeit
often
at
the
cost
of
extensive
training.
Here,
we
review
emerging
approaches
investigate
using
both
behaviors,
highlighting
strengths
limitations.
Additionally,
propose
could
be
improved
achieve
faster
learning
more
generalizable
understanding
task
rules.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: June 13, 2022
Abstract
A
core
goal
in
systems
neuroscience
and
neuroethology
is
to
understand
how
neural
circuits
generate
naturalistic
behavior.
One
foundational
idea
that
complex
behavior
may
be
composed
of
sequences
stereotyped
behavioral
syllables,
which
combine
rich
actions.
To
investigate
this,
a
common
approach
use
autoregressive
hidden
Markov
models
(ARHMMs)
segment
video
into
discrete
syllables.
While
these
approaches
have
been
successful
extracting
syllables
are
interpretable,
they
fail
account
for
other
forms
variability,
such
as
differences
speed,
better
described
continuous
nature.
overcome
limitations,
we
introduce
class
warped
ARHMMs
(WARHMM).
As
the
case
ARHMM,
modeled
mixture
dynamics.
However,
dynamics
under
each
latent
state
(i.e.
syllable)
additionally
modulated
by
“warping
variable.”
We
present
two
versions
ARHMM
warping
variable
affects
syllable
either
linearly
or
nonlinearly.
Using
depth-camera
recordings
freely
moving
mice,
demonstrate
failure
variability
results
duplicate
cluster
assignments.
WARHMM
achieves
similar
performance
standard
while
using
fewer
Further
analysis
measurements
mice
demonstrates
identifies
structure
relating
response
vigor.
Proceedings of the Royal Society B Biological Sciences,
Journal Year:
2023,
Volume and Issue:
290(2009)
Published: Oct. 25, 2023
Sensory
integration
theory
predicts
natural
selection
should
favour
adaptive
responses
of
animals
to
multiple
forms
information,
yet
empirical
tests
this
prediction
are
rare,
particularly
in
free-living
mammals.
Studying
indirect
predator
cues
offers
a
salient
opportunity
inquire
about
multimodal
risk
assessment
and
its
potentially
interactive
effects
on
prey
responses.
Here
we
exposed
California
ground
squirrels
from
two
study
sites
(that
differ
human
domestic
dog
activity)
acoustic
and/or
olfactory
reveal
divergent
patterns
signal
dominance.
Olfactory
information
most
strongly
predicted
space
use
within
the
testing
arena.
That
is,
individuals,
especially
those
at
human-impacted
site,
avoided
coyote
urine,
danger
cue
that
may
communicate
proximity
coyote.
By
contrast,
subjects
allocated
less
time
risk-sensitive
behaviours
when
cues.
Specifically,
although
individuals
were
consistent
their
behavioural
across
trials,
'quiet
coyotes'
(urine
without
calls)
significantly
increased
reactivity
prey,
likely
because
coyotes
rarely
vocalize
hunting.
More
broadly,
our
findings
highlight
need
consider
evolution
integrated
fear
contribute
an
emerging
understanding
how
integrate
trade
off
between
safety
changing
world.
Behavioural Brain Research,
Journal Year:
2024,
Volume and Issue:
464, P. 114921 - 114921
Published: Feb. 24, 2024
Dopamine
(DA)
is
mainly
involved
in
locomotor
activity,
reward
processes
and
maternal
behaviors.
Rats
with
KO
gene
for
dopamine
transporter
(DAT)
coding
a
truncated
DAT
protein
are
hyperdopaminergic
conditions
develop
stereotyped
behaviors
hyperactivity.
Our
aim
was
to
test
the
prior
transgenerational
modulation
of
wild
allele
as
expressed
heterozygous
rats:
specifically
we
addressed
possible
sequelae
due
genotype
gender
ancestors,
regard
behavioral
differences
F1,
F2,
F3
rats.
We
studied
non-classical
heterozygotes
based
on
two
specular
lines,
putative
grand-maternal
vs.
grand-paternal
imprinting.
MAT
females
(F1;
offspring
male
WT
female)
mated
generate
MIX
(F2).
Specularly,
PAT
female
male)
PIX
Similarly
PAT,
obtained
MUX
(F2;
HET
sire
dam);
also
observed
(MYX:
female,
thus
grandmother
like
PIX).
their
circadian
activity
behavior
elevated-plus-maze
(EPM).
Locomotor
hyper-activity
occurs
opposite
MYX
rats
appearing
undistinguishable
from
ones.
Open-arm
preference
emerged
MIX.
Only
showed
significant
vulnerability
ADHD-like
inattentive
symptoms
(duration
rearing
EPM;
Viggiano
et
al.,
2002).
A
risk-taking
profile
evident
F2
phenotype
while
inattentiveness
F1
progeny
tends
be
transferred
F3.
hypothesize
that
DAT-related
phenotypes
result
effective
inheritance
through
pedigree
dependent
grandparents,
suggesting
protective
role
gestation
future
dam
uterus.
For
major
features,
similar
odd
(F1,
F3)
generations
appear
opposed
even
(F2)
ones;
minor
specific
transfer
may
affect
progenies
but
not
DAT-KO
ancestor.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: March 16, 2024
Abstract
Despite
the
ongoing
epidemic
of
opioid
use
disorder
and
death
by
fentanyl
overdose,
opioids
remain
gold
standard
for
analgesics.
Pharmacokinetics
(PK)
dictates
individual’s
experience
utility
drugs;
however,
PK
behavioral
outcomes
have
been
conventionally
studied
in
separate
groups,
even
preclinical
models.
To
bridge
this
gap,
we
developed
first
class
sensitive,
selective,
genetically
encodable
fluorescent
biosensors,
iOpioidSnFRs,
including
sensor,
iFentanylSnFR.
We
expressed
iFentanylSnFR
ventral
tegmental
area
mice
recorded
[fentanyl]
alongside
videos
behaviors
before
after
administration.
a
machine
vision
routine
to
quantify
effects
behavior
on
locomotor
activity.
found
that
receiving
exhibited
repetitive
pattern
paralleled
time
course.
In
experiment,
navigating
complex
maze
water
showed
dose-dependent
impairment
navigation,
which
animals
repeated
incorrect
paths
exclusion
most
unexplored
duration
average
This
approach
complements
classical
operant
conditioning
experiments
introduces
key
feature
human
addiction,
ability
carry
out
an
ethologically
relevant
survival
task,
only
now
quantified
rodents.
Finally,
demonstrate
detecting
spiked
into
biofluids
generalizability
engineering
methods
evolve
selective
biosensors
other
opioids,
such
as
tapentadol
levorphanol.
These
results
encourage
diagnostic
continuous
monitoring
approaches
personalizing
regimens
humans.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 14, 2024
ABSTRACT
Social
aversion
is
a
key
feature
of
numerous
mental
health
disorders
such
as
Anxiety
and
Autism
Spectrum
Disorders.
Nevertheless,
the
biobehavioral
mechanisms
underlying
social
remain
poorly
understood.
Progress
in
understanding
etiology
has
been
hindered
by
lack
comprehensive
tools
to
assess
model
systems.
Here,
we
created
new
behavioral
task
–
Selective
Access
Unrestricted
Interaction
(SAUSI),
which
integrates
elements
motivation,
hesitancy,
decision-making,
free
interaction
enable
wholistic
assessment
mice.
Using
this
novel
assay,
found
that
isolation-induced
mice
largely
driven
increases
fear
motivation.
Deep
learning
analyses
revealed
unique
footprint
socially
aversive
state
produced
isolation,
demonstrating
compatibility
modern
computational
approaches
with
SAUSI.
was
further
assessed
using
traditional
assays
including
3-chamber
sociability
assay
resident
intruder
were
sufficient
reveal
fragments
phenotype,
changes
either
motivation
or
interaction,
but
failed
provide
aversion.
Critically,
these
not
components
aversion,
freezing
hesitancy
behaviors.
Lastly,
demonstrated
SAUSI
generalizable,
it
can
be
used
induced
non-social
stressors,
foot
shock.
Our
findings
debut
for
toolbox
one
overcomes
limitations
previous
assays,
allowing
both
choice
well
offers
approach
assessing
rodents.