
Nucleic Acids Research, Journal Year: 2025, Volume and Issue: 53(8)
Published: April 22, 2025
Abstract Mobile genetic elements evade CRISPR–Cas adaptive immunity by encoding anti-CRISPR proteins (Acrs). Acrs inactivate systems via diverse mechanisms but generally coevolve with a narrow subset of Cas effectors that share high sequence similarity. Here, we demonstrate AcrIIA11 inhibits Streptococcus pyogenes (Sp), Staphylococcus aureus (Sa), and Francisella novicida (Fn) Cas9s in vitro human cells. Single-molecule imaging reveals hinders SaCas9 target search reducing its diffusion on nonspecific DNA. DNA cleavage is inhibited because the AcrIIA11:SaCas9 complex binds to protospacer adjacent motif (PAM)-rich off-target sites, preventing from reaching target. also greatly slows down after reaches site. A negative-stain electron microscopy reconstruction an RNP heterodimer assembles 1:1 stoichiometry. Physical AcrIIA11–Cas9 interactions across type IIA IIB correlate nuclease inhibition support broad-spectrum activity. These results add kinetic mechanism phage-CRISPR arms race.
Language: Английский