Exploring sub-species variation in food microbiomes: a roadmap to reveal hidden diversity and functional potential DOI Creative Commons
Lena Flörl, A Meyer, Nicholas A. Bokulich

et al.

Applied and Environmental Microbiology, Journal Year: 2025, Volume and Issue: unknown

Published: April 30, 2025

ABSTRACT Within-species diversity of microorganisms in food systems significantly shapes community function. While next-generation sequencing (NGS) methods have advanced our understanding microbiomes at the level, it is essential to recognize importance within-species variation for and predicting functional activities these communities. This review highlights substantial observed among microbial species its implications their functionality. We discuss a selection key fermented foods systems, highlighting examples strain-level influence on quality safety. present comprehensive roadmap methodologies aimed uncovering this often overlooked underlying diversity. Technologies like long-read marker-gene or shotgun metagenome offer enhanced resolution communities insights into potential individual strains should be integrated with techniques such as metabolomics, metatranscriptomics, metaproteomics link structure activities. Furthermore, interactions between viruses microbes that contribute strain stability are also critical consider. article existing research emphasizes incorporating studies harness full potential, advance fundamental science, foster innovation.

Language: Английский

Synergy of Traditional Practices and Modern Technology: Advancing the Understanding and Applications of Microbial Resources and Processes in Fermented Foods DOI
Yuli Zhang,

X.M. Zhu,

Nan Wang

et al.

Trends in Food Science & Technology, Journal Year: 2025, Volume and Issue: unknown, P. 104891 - 104891

Published: Jan. 1, 2025

Language: Английский

Citations

1
Analysis of the microbial community in Yongchuan douchi and the screening and application of core fermentation strains DOI
Xiaoyun Guo, Hongwei Hou, Siying Wang

et al.

International Journal of Gastronomy and Food Science, Journal Year: 2025, Volume and Issue: unknown, P. 101159 - 101159

Published: March 1, 2025

Language: Английский

Citations

0
Sustainable Approaches in Viticulture: From Wastes and Side Streams to High-Value Products DOI
Niël van Wyk,

Claudia Borgmeier,

Alice Kleber

et al.

Advances in biochemical engineering, biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0
Exploring sub-species variation in food microbiomes: a roadmap to reveal hidden diversity and functional potential DOI Creative Commons
Lena Flörl, A Meyer, Nicholas A. Bokulich

et al.

Applied and Environmental Microbiology, Journal Year: 2025, Volume and Issue: unknown

Published: April 30, 2025

ABSTRACT Within-species diversity of microorganisms in food systems significantly shapes community function. While next-generation sequencing (NGS) methods have advanced our understanding microbiomes at the level, it is essential to recognize importance within-species variation for and predicting functional activities these communities. This review highlights substantial observed among microbial species its implications their functionality. We discuss a selection key fermented foods systems, highlighting examples strain-level influence on quality safety. present comprehensive roadmap methodologies aimed uncovering this often overlooked underlying diversity. Technologies like long-read marker-gene or shotgun metagenome offer enhanced resolution communities insights into potential individual strains should be integrated with techniques such as metabolomics, metatranscriptomics, metaproteomics link structure activities. Furthermore, interactions between viruses microbes that contribute strain stability are also critical consider. article existing research emphasizes incorporating studies harness full potential, advance fundamental science, foster innovation.

Language: Английский

Citations

0