Multi-Objective Optimization Accelerates the De Novo Design of Antimicrobial Peptide for Staphylococcus aureus DOI Open Access
Cheng‐Hong Yang,

Yi-Ling Chen,

Terence K.M. Cheung

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(24), P. 13688 - 13688

Published: Dec. 21, 2024

Humans have long used antibiotics to fight bacteria, but increasing drug resistance has reduced their effectiveness. Antimicrobial peptides (AMPs) are a promising alternative with natural broad-spectrum activity against bacteria and viruses. However, instability hemolysis limit medical use, making the design improvement of AMPs key research focus. Designing antimicrobial multiple desired properties using machine learning is still challenging, especially limited data. This study utilized multi-objective optimization method, non-dominated sorting genetic algorithm II (NSGA-II), enhance physicochemical peptide sequences identify those improved activity. Combining NSGA-II neural networks, approach efficiently identified AMP candidates accurately predicted antibacterial method significantly advances by optimizing factors like hydrophobicity, index, aliphatic index improve stability. It offers more efficient way address limitations AMPs, paving for development safer effective treatments.

Language: Английский

Enhancing Titanium-Osteointegration: Antimicrobial, anti-inflammatory and osteogenic properties of multifunctional coatings through Layer-by-Layer Self-Assembly DOI

Danyang Xu,

Xiaofeng Wang, Meiyu Li

et al.

Applied Surface Science, Journal Year: 2024, Volume and Issue: unknown, P. 162149 - 162149

Published: Dec. 1, 2024

Language: Английский

Citations

10

Flexible Tail of Antimicrobial Peptide PGLa Facilitates Water Pore Formation in Membranes DOI

Chunsuo Tian,

Xuyang Liu, Yuelei Hao

et al.

The Journal of Physical Chemistry B, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 23, 2025

PGLa, an antimicrobial peptide (AMP), primarily exerts its antibacterial effects by disrupting bacterial cell membrane integrity. Previous theoretical studies mainly focused on the binding mechanism of PGLa with membranes, while water pore formation induced peptides, especially role structural flexibility in process, remains unclear. In this study, using all-atom simulations, we investigated entire process deformation caused interaction anionic composed dimyristoylphosphatidylcholine (DMPC) and dimyristoylphosphatidylglycerol (DMPG). Using a deep learning-based key intermediate identification algorithm, found that C-terminal tail plays crucial for insertion into membrane, assistance, variety pores formed inside membrane. Mutation residues revealed that, addition to electrostatic hydrophobic interactions, is formation. The full extension these flexible enhances peptide–peptide peptide–membrane guiding transmembrane movement aggregation monomers within ultimately leading water-filled Overall, study provides understanding similar AMPs, particularly elucidating first time importance both oligomerization processes.

Language: Английский

Citations

1

Pore-forming peptide C14R exhibits potent antifungal activity against clinical isolates of Candida albicans and Candida auris DOI Creative Commons

Nórida Vélez,

Andreys Argel,

Ann‐Kathrin Kissmann

et al.

Frontiers in Cellular and Infection Microbiology, Journal Year: 2024, Volume and Issue: 14

Published: March 27, 2024

Introduction Invasive candidiasis is a global public health problem as it poses significant threat in hospital-settings. The aim of this study was to evaluate C14R, an analog derived from peptide BP100, potential antimicrobial against the prevalent opportunistic yeast Candida albicans and emergent multidrug-resistant auris . Methods Antifungal susceptibility testing C14R 99 C 105 clinical isolates Colombia, determined by broth microdilution. Fluconazole used control antifungal. synergy between fluconazole assessed resistant isolates. Assays fungal biofilm growth curves were also carried out. Morphological alterations cell surface evaluated scanning electron microscopy. A permeability assay verified pore-forming ability C14R. Results C. had geometric mean MIC 4.42 µg/ml 5.34 µg/ml, respectively. Notably, none any species exhibited at highest concentration (200 µg/ml). Synergistic effects observed when combining fluconazole. affects Cell membrane disruptions both after treatment with peptide. It confirmed that form pores ’ membrane. Discussion has potent antifungal activity large set , showing its capacity disrupt membranes. This remains consistent across regardless their source. Furthermore, absence correlation MICs resistance indicates peptide’s effectiveness fluconazole-resistant strains. Our results suggest peptide, option for infections, such invasive candidiasis, including amphotericin B -resistant

Language: Английский

Citations

6

Nanofiber Peptides for Bacterial Trapping: A Novel Approach to Antibiotic Alternatives in Wound Infections DOI
Hao Yang, Jiufeng Wang, Xue Wang

et al.

Advanced Healthcare Materials, Journal Year: 2024, Volume and Issue: 13(19)

Published: April 12, 2024

Abstract The pervasive employment of antibiotics has engendered the advent drug‐resistant bacteria, imperiling well‐being and health both humans animals. Infections precipitated by such multi‐resistant especially those induced methicillin‐resistant Staphylococcus aureus (MRSA), pervade hospital settings, constituting a grave menace to patient vitality. Antimicrobial peptides (AMPs) have garnered considerable attention as potent countermeasure against multidrug resistant bacteria. In preceding research endeavors, an insect‐derived antimicrobial peptide is identified that, while possessing attributes, manifested suboptimal efficacy Gram‐positive To ameliorate this issue, work enhances capabilities initial β‐hairpin AMPs substituting structural sequence original with variant lengths hydrophobic amino acid‐hydrophilic acid repeat units. Throughout endeavor, number that possess highly effective antibacterial characteristics wide range Additionally, some these ability self‐assemble into nanofibers, which then build networks in distinctive manner capture Consequently, they represent prospective antibiotic alternatives for addressing wound infections

Language: Английский

Citations

5

Screening of Short-Chain Antimicrobial Peptide LKARI with Broad-Spectrum Bactericidal Properties and Its Application in Promoting Wound Healing DOI

Han Wu,

Yumei Wang,

Zekai Ren

et al.

ACS Applied Materials & Interfaces, Journal Year: 2024, Volume and Issue: 16(25), P. 32087 - 32103

Published: June 12, 2024

Due to the extensive use of antibiotics, many highly resistant bacteria and extensively have been produced. In recent years, increase drug-resistant resulting proliferation increased incidence hospital-acquired infections caused great harm human health. Antimicrobial peptides (AMPs) are considered be an innovative antibiotic belong latest advances in this field. We designed a polypeptide verified its low minimum inhibitory concentration broad-spectrum activity against Gram-positive bacteria, Gram-negative fungi microbiology pharmacology. Several experiments confirmed that screened antimicrobial significant antidrug resistance also show therapeutic properties treatment systemic bacterial infections. addition, through our experimental research, it was proved antibacterial hydrogel composed poly(vinyl alcohol), sodium alginate, had excellent showed good wound healing ability.

Language: Английский

Citations

5

Gallium-based metal–organic frameworks loaded with antimicrobial peptides for synergistic killing of drug-resistant bacteria DOI
Shuo Liu,

Yuxin Ji,

Hangqi Zhu

et al.

Journal of Materials Chemistry B, Journal Year: 2023, Volume and Issue: 11(43), P. 10446 - 10454

Published: Jan. 1, 2023

One-step synthesis of gallium-based metal–organic frameworks loaded with antimicrobial peptides at room temperature for synergistic killing drug-resistant bacteria.

Language: Английский

Citations

12

Biocompatible formulation of a hydrophobic antimicrobial peptide L30 through nanotechnology principles and its potential role in mouse pneumonia model infected with Staphylococcus aureus DOI
Ruihua Li, Huiping Gao,

Ruiling Zhang

et al.

Colloids and Surfaces B Biointerfaces, Journal Year: 2024, Volume and Issue: 236, P. 113823 - 113823

Published: Feb. 24, 2024

Language: Английский

Citations

4

Capping motifs in antimicrobial peptides and their relevance for improved biological activities DOI Creative Commons
José Brango‐Vanegas, Michel Lopes Leite, Maria Lı́gia Rodrigues Macedo

et al.

Frontiers in Chemistry, Journal Year: 2024, Volume and Issue: 12

Published: May 30, 2024

N-capping (N-cap) and C-capping (C-cap) in biologically active peptides, including specific amino acids or unconventional group motifs, have been shown to modulate activity against pharmacological targets by interfering with the peptide's secondary structure, thus generating unusual scaffolds. The insertion of capping motifs linear peptides has prevent peptide degradation reducing its susceptibility proteolytic cleavage, replacement some functional groups N- regions led optimized variants improved structure enhanced activity. Furthermore, essential acid residues that, when placed antimicrobial (AMP) regions, are capable complexing metals such as Cu

Language: Английский

Citations

4

A Novel Type I Crustin Isoform from Scylla olivacea and its Antibacterial Potential: Membrane Depolarization, Disruption, and Induction of Reactive Oxygen Species as Modes of Action DOI

S. Neelima,

M.V. Anju,

K. Archana

et al.

Probiotics and Antimicrobial Proteins, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 13, 2025

Language: Английский

Citations

0

Modified SPPS Protocol for the Synthesis of Novel Antimicrobial Peptides DOI
Dinesh Kumar Anguraj,

Shivani Chaudhary,

Mukesh Pasupuleti

et al.

International Journal of Peptide Research and Therapeutics, Journal Year: 2025, Volume and Issue: 31(4)

Published: April 21, 2025

Language: Английский

Citations

0