Cited by Antibiotic resistance at environmental multi-media interfaces through integrated genotype and phenotype analysis

Biofilms in plastisphere from freshwater wetlands: Biofilm formation, bacterial community assembly, and biogeochemical cycles DOI

Meng Liang,

Longrui Liang,

Yansong Shi

et al.

Journal of Hazardous Materials, Journal Year: 2024, Volume and Issue: 476, P. 134930 - 134930

Published: June 18, 2024

Language: Английский

Citations

Deciphering Microbial Community and Nitrogen Fixation in the Legume Rhizosphere DOI

Yaohui Yang,

Nuohan Xu,

Zhenyan Zhang

et al.

Journal of Agricultural and Food Chemistry, Journal Year: 2024, Volume and Issue: 72(11), P. 5659 - 5670

Published: March 5, 2024

Nitrogen is the most limiting factor in crop production. Legumes establish a symbiotic relationship with rhizobia and enhance nitrogen fixation. We analyzed 1,624 rhizosphere 16S rRNA gene samples 113 metagenomic from three typical legumes non-legumes. The microbial community of had low diversity was enriched nitrogen-cycling bacteria (Sphingomonadaceae, Xanthobacteraceae, Rhizobiaceae, Bacillaceae). Furthermore, microbiota exhibited high abundance nitrogen-fixing genes, reflecting stronger potential, Streptomycetaceae Nocardioidaceae were predominant bacteria. also identified helper confirmed through metadata analysis pot experiment that synthesis riboflavin by key promoting Our study emphasizes construction synthetic communities crucial for development efficient fertilizers.

Language: Английский

Citations

A risk entropy approach for linking pesticides and soil bacterial communities DOI

Tao Lu,

Chaotang Lei,

Mingyu Gao

et al.

Journal of Hazardous Materials, Journal Year: 2024, Volume and Issue: 469, P. 133970 - 133970

Published: March 5, 2024

Language: Английский

Citations

Soil viral–host interactions regulate microplastic-dependent carbon storage DOI

Lu Wang, Da Lin, Ke‐Qing Xiao

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2024, Volume and Issue: 121(45)

Published: Oct. 28, 2024

Microplastic is globally regarded as an important factor impacting biogeochemical cycles, yet our understanding of such influences limited by the uncertainties intricate microbial processes. By multiomics analysis, coupled with soil chemodiversity characterization and carbon use efficiency (CUE), we investigated how responses to microplastics impacted cycling in a long-term field experiment. We showed that biodegradable promoted organic accrual average 2.47%, while nondegradable inhibited it 17.4%, consequence virus–bacteria coadaptations disturbance. In relevant functional pathways, significantly ( P < 0.05) enhanced abundance transcriptional activity related complex carbohydrate metabolism, whereas functions involved amino acid metabolism glycolysis. Accordingly, viral lysis treatments introduce more compounds dissolved matters, thus benefiting oligotrophs high metabolic capabilities exploitation competition. contrast, enriched auxiliary genes through “piggyback-the-winner” strategy, conferring dominant copiotrophs, substrate utilization capabilities. These virus–host interactions were also demonstrated corresponding plastisphere, which would alter resource allocation via CUE, affecting storage consequently. Overall, results underscore importance viral–host microplastics-dependent ecosystem.

Language: Английский

Citations

Viral Communities Suppress the Earthworm Gut Antibiotic Resistome by Lysing Bacteria on a National Scale DOI

Shuai Du, Li Bi, Da Lin

et al.

Environmental Science & Technology, Journal Year: 2024, Volume and Issue: 58(31), P. 13961 - 13972

Published: July 22, 2024

Earthworms are critical in regulating soil processes and act as filters for antibiotic resistance genes (ARGs). Yet, the geographic patterns main drivers of earthworm gut ARGs remain largely unknown. We collected 52 samples from arable forest ecosystems along a 3000 km transect across China, analyzing diversity abundance using shotgun metagenomics. Earthworm guts harbored lower compared to soil, resulting stronger distance-decay rate gut. Greater deterministic assembly were found than soil. The had frequency co-occurrence between mobile genetic elements (MGEs) systems. Viral was higher negatively correlated with bacterial diversity. Bacteria such

Language: Английский

Citations

Soil warming increases the active antibiotic resistome in the gut of invasive giant African snails DOI

Yiyue Zhang,

Hong-Zhe Li,

Martin F. Breed

et al.

Microbiome, Journal Year: 2025, Volume and Issue: 13(1)

Published: Feb. 6, 2025

Global warming is redrawing the map for invasive species, spotlighting globally harmful giant African snail as a major ecological disruptor and public health threat. Known harboring extensive antibiotic resistance genes (ARGs) human pathogens, it remains uncertain whether global exacerbates these associated risks. We use phenotype-based single-cell Raman with D2O labeling (Raman-D2O) genotype-based metagenomic sequencing to investigate soil increases active antibiotic-resistant bacteria (ARBs) in gut microbiome of snails. show significant increase beta-lactam phenotypic ARBs rising temperatures, mirrored by surge beta-lactamase such SHV, TEM, OCH, OKP, LEN subtypes. Through correlation analysis between abundance phenotypically genotypically ARG-carrying microbes, we identify species that contribute increased activity resistome under warming. Among 299 high-quality metagenome-assembled genomes (MAGs), further revealed enhances "supercarriers" including pathogens multiple ARGs virulence factors. Furthermore, identified elevated biosynthetic gene clusters (BGCs) within MAGs, third encoding at least one BGC. This suggests link secondary metabolism, enhancing environmental adaptability competitive advantage organisms warmer environments. The study underscores complex interactions snail, highlighting potential escalation risks due These findings emphasize urgent need integrated strategies manage threat context climate change.

Language: Английский

Citations

Unveiling the sustained effects of plant root exudates on soil microbiome and resistome and the related functional traits DOI

Lu Tan,

Jiayin Liang,

Z. H. Qin

et al.

Journal of Environmental Management, Journal Year: 2025, Volume and Issue: 376, P. 124485 - 124485

Published: Feb. 15, 2025

Language: Английский

Citations

Nonbiodegradable microplastic types determine the diversity and structure of soil microbial communities: A meta-analysis DOI

Xinhui Liu, Yongxiang Yu,

Haiyang Yu

et al.

Environmental Research, Journal Year: 2024, Volume and Issue: 260, P. 119663 - 119663

Published: July 21, 2024

Language: Английский

Citations

Responses of soil antibiotic resistance genes to the decrease in grain size of sediment discharged into Dongting Lake, China DOI

Haipeng Wu,

Guxiang Xu,

Ruiqing Yang

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 953, P. 176091 - 176091

Published: Sept. 6, 2024

Language: Английский

Citations

Antibiotics and Pesticides Enhancing the Transfer of Resistomes among Soil-Bayberry-Fruit Fly Food Chain in the Orchard Ecosystem DOI

Ge Yi,

Mingkang Jin,

Tian-Gui Cai

et al.

Environmental Science & Technology, Journal Year: 2024, Volume and Issue: unknown

Published: Oct. 4, 2024

While substantial amounts of antibiotics and pesticides are applied to maintain orchard yields, their influence on the dissemination risk antibiotic resisitome in food chain remains poorly understood. In this study, we characterized bacterial fungal communities differentiated both resistance genes (ARGs) virulence factor (VFGs) soil, Chinese bayberry (matured fallen), fruit fly gut, collected from five geographic locations. Our results showed that guts soils exhibit a higher abundance ARGs VFGs compared with fruits. We identified 112 shared 75 VFGs, aminoglycoside adherence being among most abundant. The co-occurrence network revealed some microbes, such as

Language: Английский

Citations