Consensus Modeling for Predicting Chemical Binding to Transthyretin as the Winning Solution of the Tox24 Challenge
Chemical Research in Toxicology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 19, 2025
The
utilization
of
predictive
methodologies
for
the
assessment
toxicological
properties
represents
an
alternative
approach
that
facilitates
identification
safe
compounds
while
concurrently
reducing
financial
costs
associated
with
process.
objective
Tox24
Challenge
was
to
assess
progress
in
computational
methods
predicting
activity
chemical
binding
transthyretin
(TTR).
In
order
fulfill
requirements
this
task,
data
set,
measured
by
Environmental
Protection
Agency,
consisted
1512
substances
diverse
nature.
This
paper
describes
model
won
and
steps
taken
its
further
improvement.
Transformer
convolutional
neural
network
(CNN)
achieved
best
performance
as
a
standalone
solution.
Meanwhile,
multitask
built
on
graph
CNN,
trained
using
11
additional
acute
systemic
toxicity
sets
increased
weighting
TTR
activity,
showed
comparable
results
blind
test
set.
winning
solution
consensus
consisting
two
catBoost
models
OEstate
Mold2
descriptor
sets,
well
transformer-based
models.
improvement
involved
adding
fifth
based
learning
CNN
method,
which
led
reduction
RMSE
set
20.3%.
developed
OCHEM
web
platform
is
available
online
at
https://ochem.eu/article/162082.
Language: Английский
Efficient synthesis of isoamyl acetate in deep eutectic solvent utilizing in-situ aqueous phase immobilized lipase biocatalyst
Food Bioscience,
Journal Year:
2025,
Volume and Issue:
unknown, P. 105963 - 105963
Published: Jan. 1, 2025
Language: Английский
Machine Learning for Predicting and Optimizing Physicochemical Properties of Deep Eutectic Solvents: Review and Perspectives
Industrial & Engineering Chemistry Research,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 19, 2024
This
review
explores
the
application
of
machine
learning
in
predicting
and
optimizing
key
physicochemical
properties
deep
eutectic
solvents,
including
CO2
solubility,
density,
electrical
conductivity,
heat
capacity,
melting
temperature,
surface
tension,
viscosity.
By
leveraging
learning,
researchers
aim
to
enhance
understanding
customization
a
critical
step
expanding
their
use
across
various
industrial
research
domains.
The
integration
represents
significant
advancement
tailoring
solvents
for
specific
applications,
marking
progress
toward
development
greener
more
efficient
processes.
As
continues
unlock
full
potential
it
is
expected
play
an
increasingly
pivotal
role
revolutionizing
sustainable
chemistry
driving
innovations
environmental
technology.
Language: Английский
Improved Solubility Predictions in scCO2 Using Thermodynamics-Informed Machine Learning Models
Journal of Chemical Information and Modeling,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 15, 2025
Accurate
solubility
prediction
in
supercritical
carbon
dioxide
(scCO2)
is
crucial
for
optimizing
experimental
design
by
eliminating
unnecessary
and
costly
trials
at
an
early
stage,
thereby
streamlining
the
workflow.
A
comprehensive
database
containing
31,975
records
has
been
compiled,
providing
a
foundation
developing
predictive
models
applicable
to
diverse
class
of
chemical
compounds,
with
particular
focus
on
drug-like
substances.
In
this
study,
we
propose
domain-aware
machine
learning
approach
that
incorporates
thermodynamic
properties
governing
phase
transitions
predictions
scCO2.
Predictive
were
developed
using
CatBoost
algorithm
graph-based
architecture
employing
directed
message
passing
identify
most
effective
approach.
Furthermore,
auxiliary
solute,
including
melting
point,
critical
parameters,
enthalpy
vaporization,
Gibbs
free
energy
solvation,
predicted
as
part
work.
The
findings
underscore
efficacy
incorporating
domain-specific
features
enhance
accuracy
scCO2
modeling.
interpretation
applicability
domain
assessment
have
confirmed
qualitative
selection
employed
descriptors,
demonstrating
their
ability
generalize
unique
compounds
fall
outside
defined
domain.
Language: Английский
ChemBERTa Embeddings and Ensemble Learning for Prediction of Density and Melting Point of Deep Eutectic Solvents with Hybrid Features
Computers & Chemical Engineering,
Journal Year:
2025,
Volume and Issue:
unknown, P. 109065 - 109065
Published: Feb. 1, 2025
Language: Английский
Investigation of CO2 Absorption and Physicochemical Properties of Deep Eutectic Solvents Based on Amine Hydrohalides and Alkanolamines
Journal of Chemical & Engineering Data,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 7, 2025
Language: Английский
The Physicochemical Properties and Plausible Implication of Deep Eutectic Solvents in Analytical Techniques
Vahishta K. Katrak,
No information about this author
Ninad K Patel,
No information about this author
Sushma P. Ijardar
No information about this author
et al.
Critical Reviews in Analytical Chemistry,
Journal Year:
2025,
Volume and Issue:
unknown, P. 1 - 24
Published: April 9, 2025
Volatile
organic
solvents
and
fluoride-containing
ionic
liquids
(ILs)
have
few
drawbacks
like
toxicity,
non-biodegradability,
environmental
issues.
Even
though
ILs
are
considered
as
new
safest
solvent
for
their
lower
volatility.
They
pose
toxicity
sustainability
concerns.
Deep
eutectic
(DESs)
garnered
significant
attention
substitutes
these
solvents,
addressing
aligning
with
specific
principles
of
green
chemistry,
such
reduced
biodegradability,
the
use
renewable
resources.
This
review
thoroughly
explains
emergence
inception
DESs
through
development.
It
deals
physicochemical
properties
density,
polarity,
viscosity.
The
factors
dealing
variation
in
density
viscosity
DES
been
discussed.
preparation
operation
DESs,
encompassing
various
variants
hydrophobic
hydrophilic
types
examined
to
provide
a
comprehensive
grasp
chemical
properties.
Beyond
basic
characteristics,
article
delves
into
applications
demonstrate
flexibility.
show
promising
multifarious
utility,
ranging
from
acting
extractant
critical
roles
sorbent-based
extractions,
solvent-based
role
analytical
techniques.
covers
opportunities
difficulties
associated
offering
prospective
viewpoint
on
future
advancements
difficulties.
outlines
different
facets
research,
emphasizing
level
knowledge
at
moment
potential
influence
emerging
subject
DESs.
Language: Английский
Recent Developments in Deep Eutectic Solvents Applications in Liquid Chromatography: 2019–2025
Journal of Separation Science,
Journal Year:
2025,
Volume and Issue:
48(5)
Published: May 1, 2025
ABSTRACT
Deep
eutectic
solvents
(DES)
are
used
as
mobile
phase
and
stationary
modifiers,
or
for
the
itself
thin
layer/liquid/supercritical
chromatography.
Their
specific
properties
can
improve
separation
selectivity,
reduce
peak
tailing,
shorten
time.
In
terms
of
environmental
impact,
advantages
DES
based
on
their
biodegradability,
recyclability,
stability
in
mechanical/chemical/thermal
properties.
The
disadvantages
related
to
higher
viscosity
degradation
aqueous
solutions.
This
review
focuses
works
that
have
been
published
since
2019,
year
excellent
comprehensive
by
Cai
Qiu
was
printed.
Selected
parameters
discussed
should
be
considered
when
preferred
over
commonly
phases
due
green
chemistry
trends,
while
taking
into
account
limitations
modern
LC
separations.
also
centres
critical
aspects
applications
field
liquid
supercritical
fluid
chromatographic
Language: Английский