Phylogenetic exploration, codon usage bias, and genomic divergence in Hydrocotyle: a comparative plastome study across different geographical locations DOI
Bimal K. Chetri, Alok Senapati, Rahul G. Shelke

et al.

Genetica, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 26, 2024

Language: Английский

Phylogenetic incongruence in an Asiatic species complex of the genus Caryodaphnopsis (Lauraceae) DOI Creative Commons

Shiting Yang,

Jiepeng Huang,

Yaya Qu

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: June 28, 2024

Abstract Background Caryodaphnopsis , a group of tropical trees ( ca . 20 spp.) in the family Lauraceae, has an amphi-Pacific disjunct distribution: ten species are distributed Southeast Asia, while eight restricted to rainforests South America. Previously, phylogenetic analyses using two nuclear markers resolved relationships among five from Latin However, between Asia remain poorly known. Results Here, we first determined complete mitochondrial genome (mitogenome), plastome, and ribosomal cistron (nrDNA) sequences C. henryi with lengths 1,168,029 bp, 154,938 6495 respectively. We found 2233 repeats 368 potential SSRs mitogenome 50 homologous DNA fragments its plastome. Gene synteny analysis revealed mass rearrangements mitogenomes Magnolia biondii Hernandia nymphaeifolia only six conserved clustered genes them. In order reconstruct for created three datasets: one (coding intergenic regions), another plastome (whole genome), other cistron. All 22 individuals were divided into four, five, different clades phylogenies based on mitogenome, nrDNA datasets, Conclusions The study showed conflicts within organellar data species. sympatric Hekou Malipo SW China may be related incomplete lineage sorting, chloroplast capture, and/or hybridization, which mixed as complex their evolutionary history.

Language: Английский

Citations

4

Global advances in phylogeny, taxonomy and biogeography of Lauraceae DOI Creative Commons
Lang Li, Bing Liu, Yu Song

et al.

Plant Diversity, Journal Year: 2025, Volume and Issue: unknown

Published: April 1, 2025

Language: Английский

Citations

0

The complete chloroplast genome sequences of 11 Panax species: Providing insights for evolution and species identification DOI Creative Commons
Pengguo Xia, Yang Huang, Junqiao Zhu

et al.

Industrial Crops and Products, Journal Year: 2024, Volume and Issue: 223, P. 120160 - 120160

Published: Dec. 10, 2024

Language: Английский

Citations

2

Phylogenetic exploration, codon usage bias, and genomic divergence in Hydrocotyle: a comparative plastome study across different geographical locations DOI
Bimal K. Chetri, Alok Senapati, Rahul G. Shelke

et al.

Genetica, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 26, 2024

Language: Английский

Citations

0