Complete Mitochondrial Genome of Niphon spinosus (Perciformes: Niphonidae): Genome Characterization and Phylogenetic Analysis
Biomolecules,
Journal Year:
2025,
Volume and Issue:
15(1), P. 52 - 52
Published: Jan. 2, 2025
The
species
Niphon
spinosus
(Cuvier,
1829)
is
the
only
representative
of
family
Niphonidae
and
genus
Niphon,
its
taxonomic
history
complicated;
it
still
unclear
in
a
phylogenetic
sense.
In
this
study,
we
report
complete
mitochondrial
genome
N.
(OP391482),
which
was
determined
to
be
16,503
bp
long
with
biased
A
+
T
contents
(53.8%)
using
next-generation
technology.
typical
set
13
protein-coding
genes
(PCGs),
2
rRNA
genes,
22
tRNA
one
control
region
(D-loop)
are
included
genome.
H-strand
encoded
28
(14
tRNA,
rRNA,
12
PCGs),
D-loop,
whereas
L-strand
remaining
9
(8
ND6).
Its
nucleotide
composition,
gene
arrangement,
codon
usage
patterns,
secondary
structures
identical
other
members
Percoidei
suborder.
Furthermore,
reconstructed
trees
based
on
PCGs.
resulting
showed
placing
as
separate
lineage
within
Niphonidae,
close
relationship
Trachinus
draco
(Trachinidae),
clustering
major
subfamilies
like
Luciopercinae
Percinae
These
findings
will
contribute
future
studies
evolutionary
history,
population
genetics,
molecular
taxonomy,
phylogeny
related
species.
Language: Английский
Molecular characterization of virulent genes in Pseudomonas aeruginosa based on componential usage divergence
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: April 2, 2025
Language: Английский
Unravelling Prokaryotic Codon Usage: Insights from Phylogeny, Influencing Factors and Pathogenicity
Current Genomics,
Journal Year:
2024,
Volume and Issue:
26(2), P. 81 - 94
Published: Oct. 2, 2024
Analyzing
prokaryotic
codon
usage
trends
has
become
a
crucial
topic
of
study
with
significant
ramifications
for
comprehending
microbial
genetics,
classification,
evolution,
and
the
control
gene
expression.
This
review
explores
numerous
facets
patterns,
looking
at
different
parameters
like
habitat
lifestyle
across
broad
groups
prokaryotes
by
emphasizing
role
reprogramming
in
adaptive
strategies
its
integration
into
systems
biology.
We
also
explored
variables
driving
bias,
including
natural
selection,
mutation,
horizontal
transfer,
codon-anticodon
interaction,
genomic
composition
through
thorough
current
literature.
Furthermore,
special
session
on
pathogenic
phylogeny
been
discussed.
looked
various
software
indices
that
have
recently
applied
to
genomes.
The
promising
directions
lay
ahead
map
future
research
emphasized.
Codon
variations
communities
could
be
better
understood
combining
environmental,
metagenomic,
system
biology
approaches.
Language: Английский