Journal of Plant Growth Regulation, Journal Year: 2024, Volume and Issue: unknown
Published: Oct. 25, 2024
Language: Английский
Chemical and Biological Technologies in Agriculture, Journal Year: 2024, Volume and Issue: 11(1)
Published: March 27, 2024
Abstract Background The APETALA2 (AP2) transcription factor (TF) superfamily, one of the largest gene families in plants, plays an essential role regulating plant growth and their stress responses. However, AP2 rice under pesticide remains unclear. To investigate characteristics functions family stress, expression 105 AP2-coding genes 26 differentially expressed (DEGs) were identified mesotrione (MTR)-treated transcriptome datasets. Results Three subfamilies (AP2/ERF, RAV, soloists) using sequence alignment phylogenetic analysis. Chromosome location analysis revealed that DEGs unevenly distributed on 10 12 chromosomes, segmental duplication contributed to expansion Oryza sativa (OsAP2) family. Collinearity analyses demonstrated displayed 16 orthologous pairs, pairs shared Arabidopsis soybean, respectively. In addition, featured various structures, cis-elements, motif compositions, conserved domains allowed them encode elicit biotic abiotic An docking between MTR six amino acid residues involved binding. Quantitative reverse transcription–polymerase chain reaction verified several preferentially during MTR-induced stress. roles OsAP2 proteins metabolism further supported by protein–protein interaction network analysis, which illustrated how these interact with target proteins. Conclusion initial findings this study define features superfamily offer important tools for functional implicated MTR. Graphical
Language: Английский
Citations
4
Scientia Horticulturae, Journal Year: 2024, Volume and Issue: 334, P. 113296 - 113296
Published: May 18, 2024
Language: Английский
Citations
4
International Journal of Biological Macromolecules, Journal Year: 2025, Volume and Issue: 298, P. 140043 - 140043
Published: Jan. 17, 2025
Language: Английский
Citations
0
Frontiers in Microbiology, Journal Year: 2025, Volume and Issue: 16
Published: March 18, 2025
Ectomycorrhizal fungus (ECMF) could enhance plant tolerance to heavy metal toxicity by altering accumulation and protecting plants from oxidative injury. However, the molecular mechanisms underlying ECMF-mediated detoxification of cadmium (Cd) in willow sapling are not well known. This study aimed unveil roles Cenococcum geophilum (CG) Suillus luteus (SL) regulating Cd (Salix psammophila 'Huangpi1') saplings. systematically evaluated physiological biochemical parameters leaf root tissues 18 saplings, while concurrently conducting transcriptomic analysis roots under stress. The specific treatments were labeled as follows: NF (no ECMF inoculation no addition), CG (CG colonization only), SL (SL NF+Cd with 100 μM CG+Cd SL+Cd addition). results showed growth, photosynthesis, antioxidant system transcriptome 2-month-old saplings responded differently ECMFs S. markedly increased aerial parts biomass, C. significantly enhanced property indices highest number differentially expressed genes (DEGs) was observed comparison between addition) activated hormone signal transduction carbohydrate metabolism pathways, synthesis secondary metabolites. provides a perspective on mechanism interaction stress supports application for phytoremediation Cd-contaminated soil.
Language: Английский
Citations
0
The Plant Journal, Journal Year: 2025, Volume and Issue: 122(1)
Published: April 1, 2025
The pan-genome represents the complete genomic diversity of specific species, serving as a valuable resource for studying species evolution, crop domestication, and guiding breeding improvement. While there are several single-species-specific plant databases, availability multi-species databases is limited. Additionally, variations in methods data types used analysis across different hinder comparison integration information from various projects at or single-species levels. To tackle this challenge, we introduce PlantPan, comprehensive database housing results 195 genomes 11 species. PlantPan aims to provide extensive information, including gene-centric sequence-centric graph-based pan-genome, openness profiles, gene functions its variation characteristics, homologous genes, clusters Statistically, incorporates 9 163 011 694 191 clusters, 526 973 370 genome variations, 1 616 089 non-redundant groups level, 33 455,098 synteny, 177 827 synteny level. Regarding functional contains 5 222 720 genes related transcription factors, 395 247 literature-reported resistance 455 748 predicted microbial/disease 612 112 molecular pathways. In summary, vital platform advancing application pan-genomes crops evolutionary research plants.
Language: Английский
Citations
0
Biology, Journal Year: 2025, Volume and Issue: 14(4), P. 446 - 446
Published: April 20, 2025
Quinoa (Chenopodium quinoa Willd.), often referred to as the “golden grain”, is a highly nutritious crop that has garnered significant global attention due its exceptional nutritional profile and health benefits. Flavonoids present in have been shown possess antioxidant, anti-inflammatory, antiviral, anticancer, antidepressant properties. The DNA binding with one finger (Dof) transcription factor crucial for regulating growth, development, stress responses. However, identification of Dof family using latest genomic data function abiotic response not fully elucidated. Here, 36 CqDof genes were identified from genome classified into ten subfamilies through phylogenetic analysis. Physicochemical property analysis predicted CqDofs predominantly encode basic, hydrophilic, unstable nuclear proteins. distributed across 15 chromosomes, segmental duplication being primary driver their expansion. Subsequently, basic information on was systematically analyzed, including conserved motifs, gene structure, cis-acting elements, expression patterns. Notably, promoter regions all enriched elements related light responsiveness. Further revealed red blue significantly affected flavonoid accumulation (epigallocatechin, rutin, naringenin, morin, pinocembrin, quercetin-7-O-rutinoside, quercetin-3-O-glucoside, naringenin), which 5 exhibited pronounced both conditions showed correlation levels. Finally, RT-PCR indicated levels (except CqDof21) upregulated under drought, salt, saline-alkali stresses. These findings lay groundwork future studies how regulate biosynthesis different qualities stress.
Language: Английский
Citations
0
Plant Physiology and Biochemistry, Journal Year: 2024, Volume and Issue: 215, P. 109035 - 109035
Published: Aug. 9, 2024
Language: Английский
Citations
3
International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(14), P. 7614 - 7614
Published: July 11, 2024
The wild strawberry (
Language: Английский
Citations
2
Heliyon, Journal Year: 2024, Volume and Issue: 10(17), P. e37133 - e37133
Published: Sept. 1, 2024
Bitterness is a key factor that affects the consumption of quinoa products, even if they are nutritious. In this study, non-targeted metabolomics approach based on UHPLC-Orbitrap-MS was applied to comprehensively profile characteristic metabolites twenty-two quinoas. A total twenty were identified correlated with bitterness, among which, fifteen triterpenoid saponins. addition, these bind active site human bitter taste receptor and main compounds produce quinoa. Our results contribute deeper understanding origin bitterness provide directions for optimizing its flavor improve market acceptance.
Language: Английский
Citations
2
Plants, Journal Year: 2024, Volume and Issue: 13(8), P. 1167 - 1167
Published: April 22, 2024
Osmotic stress is a condition in which plants do not get enough water due to changes environmental factors. Plant response osmotic complex process involving the interaction of different stress-sensitive mechanisms. Differentially expressed genes and mechanisms kohlrabi have been reported under stress. A total 196,642 unigenes 33,040 differentially were identified seedlings polyethylene glycol AP2/ERF, NAC eight other transcription factor family members with high degree CAT SOD antioxidant enzyme activity identified. Subsequently, 151 AP2/ERF analyzed. Twelve conserved motifs searched all clustered into four groups. 149 randomly distributed on chromosome, relative expression level analysis showed that BocAP2/ERF obvious specificity tissues. This study lays foundation for explaining resistance mechanism provides theoretical basis functional members.
Language: Английский
Citations
1