Genetic and epigenetic reprogramming in response to internal and external cues by induced transposon mobilization in Moso bamboo DOI
Long−Hai Zou,

Bailiang Zhu,

Yaxin Chen

et al.

New Phytologist, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 5, 2024

Summary Long terminal repeat retroelements (LTR‐REs) have profound effects on DNA methylation and gene regulation. Despite the vast abundance of LTR‐REs in genome Moso bamboo ( Phyllostachys edulis ), an industrial crop underdeveloped countries, their precise implication LTR‐RE mobility stress response development remains unknown. We investigated RNA products under various developmental stages stressful conditions. Surprisingly, our analyses identified thousands active LTR‐REs, particularly those located near genes involved These adjacent to exhibited increased expression are associated with reduced that is likely affected by induced LTR‐REs. Moreover, simultaneous mapping insertions showed effectively alter epigenetic status genomic regions where they inserted, concomitantly transcriptional competence which might impact resilience growth host. Our work unveils unusually strong its close association (epi)genetic changes, supports co‐evolution parasitic DNAs host attaining tolerance robustness.

Language: Английский

The genome awakens: transposon-mediated gene regulation DOI
Ileana Tossolini, Regina Mencia, A. Arce

et al.

Trends in Plant Science, Journal Year: 2025, Volume and Issue: unknown

Published: March 1, 2025

Language: Английский

Citations

1
LTR retrotransposon-derived novel lncRNA2 enhances cold tolerance in Moso bamboo by modulating antioxidant activity and photosynthetic efficiency DOI Creative Commons
Jiamin Zhao, Yiqian Ding, Muthusamy Ramakrishnan

et al.

PeerJ, Journal Year: 2025, Volume and Issue: 13, P. e19056 - e19056

Published: Feb. 26, 2025

In Moso bamboo, the mechanism of long terminal repeat (LTR) retrotransposon-derived non-coding RNA (TElncRNA) in response to cold stress remains unclear. this study, several Pe-TElncRNAs were identified from bamboo transcriptome data. qRT-PCR analysis showed that expression a novel Pe-TElncRNA2 seedlings reached its highest level at 8 hours treatment 4 °C and was significantly higher stems compared leaves, roots, buds. Furthermore, cellular localization revealed cytoplasm than nucleus. overexpression protoplasts positively regulated FZR2 , NOT3 ABCG44 AGD6 genes. Further validation lncRNA Arabidopsis thaliana enhanced antioxidant activities, as evidenced by increased superoxide dismutase (SOD) activity proline content, well maximum photochemical efficiency PS II dark-adapted leaves ( F v / m ), transgenic plants wild-type controls. Conversely, malondialdehyde (MDA) lipid peroxidation marker (a oxidative stress), reduced plants. Notably, levels both genes upregulated after two days treatment. These findings elucidate critical role LTR lncRNAs mediating responses bamboo.

Language: Английский

Citations

0
Advances in bamboo genomics: Growth and development, stress tolerance, and genetic engineering DOI
Wenjia Wang,

Qiyao Wu,

Nannan Wang

et al.

Journal of Integrative Plant Biology, Journal Year: 2025, Volume and Issue: unknown

Published: May 2, 2025

ABSTRACT Bamboo is a fast‐growing and ecologically significant plant with immense economic value due to its applications in construction, textiles, bioenergy. However, research on bamboo has been hindered by long vegetative period, unpredictable flowering cycles, challenges genetic transformation. Recent developments advanced sequencing engineering technologies have provided new insights into bamboo's evolutionary history, developmental biology, stress resilience, paving the way for improved conservation sustainable utilization. This review synthesizes latest findings genomics, biotechnology, molecular mechanisms governing growth, development, response. Key genes regulatory pathways controlling rapid internode elongation, rhizome culm lignification, flowering, abiotic responses identified through multi‐omics functional studies. Complex interactions among transcription factors, epigenetic regulators, functionally important shape unique growth characteristics. Moreover, progress techniques, including clustered regularly interspaced short palindromic repeats‐based genome editing, opened avenues targeted improvements. technical challenges, particularly complexity of polyploid genomes inefficient regeneration systems, remain barriers studies large‐scale breeding efforts. By integrating recent genomic discoveries advancements this proposes potential strategies overcome existing technological limitations accelerate development varieties. Continued efforts research, gene‐editing applications, cultivation practices will be essential harnessing as resilient renewable resource future. The presented here not only deepens our understanding architecture but also provides foundation future aimed at optimizing ecological industrial potential.

Language: Английский

Citations

0
Culm Morphological Analysis in Moso Bamboo Reveals the Negative Regulation of Internode Diameter and Thickness by Monthly Precipitation DOI Creative Commons
Qianwen Zhang,

Xue Chu,

Zhipeng Gao

et al.

Plants, Journal Year: 2024, Volume and Issue: 13(11), P. 1484 - 1484

Published: May 28, 2024

The neglect of Moso bamboo’s phenotype variations hinders its broader utilization, despite high economic value globally. Thus, this study investigated the morphological 16 bamboo populations. analysis revealed culm heights ranging from 9.67 m to 17.5 m, with average under first branch 4.91 7.67 m. total internode numbers varied 17 36, lengths spanning 2.9 cm 46.4 cm, diameters 5.10 17.2 and wall thicknesses 3.20 mm 33.3 mm, indicating distinct attributes among Furthermore, strong positive correlations were observed between diameter, thickness, length, volume. coefficient variation height showed several parameters, variability in their contribution height. A regression patterns covariation highlighting influence on structural characteristics. Both diameter thickness significantly contribute volume height, parameters tend either increase or decrease together, influencing Moreover, also identified a significant negative correlation monthly precipitation especially during December January, impacting primary thickening growth and, consequently, size.

Language: Английский

Citations

3
DNA methylation in wheat: current understanding and future potential for enhancing biotic and abiotic stress tolerance DOI
Uzma Afreen, Kunal Mukhopadhyay, Manish Kumar

et al.

Physiology and Molecular Biology of Plants, Journal Year: 2024, Volume and Issue: 30(12), P. 1921 - 1933

Published: Dec. 1, 2024

Language: Английский

Citations

1
Genetic and epigenetic reprogramming in response to internal and external cues by induced transposon mobilization in Moso bamboo DOI
Long−Hai Zou,

Bailiang Zhu,

Yaxin Chen

et al.

New Phytologist, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 5, 2024

Summary Long terminal repeat retroelements (LTR‐REs) have profound effects on DNA methylation and gene regulation. Despite the vast abundance of LTR‐REs in genome Moso bamboo ( Phyllostachys edulis ), an industrial crop underdeveloped countries, their precise implication LTR‐RE mobility stress response development remains unknown. We investigated RNA products under various developmental stages stressful conditions. Surprisingly, our analyses identified thousands active LTR‐REs, particularly those located near genes involved These adjacent to exhibited increased expression are associated with reduced that is likely affected by induced LTR‐REs. Moreover, simultaneous mapping insertions showed effectively alter epigenetic status genomic regions where they inserted, concomitantly transcriptional competence which might impact resilience growth host. Our work unveils unusually strong its close association (epi)genetic changes, supports co‐evolution parasitic DNAs host attaining tolerance robustness.

Language: Английский

Citations

0