Multiomics data integration, limitations, and prospects to reveal the metabolic activity of the coral holobiont DOI Creative Commons
Amanda Williams

FEMS Microbiology Ecology, Journal Year: 2024, Volume and Issue: 100(5)

Published: April 10, 2024

Abstract Since their radiation in the Middle Triassic period ∼240 million years ago, stony corals have survived past climate fluctuations and five mass extinctions. Their long-term survival underscores inherent resilience of corals, particularly when considering nutrient-poor marine environments which they thrived. However, coral bleaching has emerged as a global threat to survival, requiring rapid advancements research understand holobiont stress responses allow for interventions before extensive occurs. This review encompasses potential, well limits, multiomics data applications applied holobiont. Synopses how different omics tools been date current restrictions are discussed, addition ways these may be overcome, such recruiting new technology studies, utilizing novel bioinformatics approaches, generally integrating data. Lastly, this presents considerations design studies support lab-to-field marker monitoring systems. Although much mechanism eluded investigation date, multiomic already produced key findings regarding holobiont’s response, potential advance field further.

Language: Английский

Coral Restoration in the Omics Era: Development of Point‐of‐Care Tools for Monitoring Disease, Reproduction, and Thermal Stress DOI Creative Commons
Erin Chille, Timothy G. Stephens,

Soumi Nandi

et al.

BioEssays, Journal Year: 2025, Volume and Issue: unknown

Published: April 26, 2025

ABSTRACT Coral reef degradation has captured global attention from governments, conservationists, and researchers, who are making concerted efforts to develop sustainable solutions support resilience in the face of environmental degradation. The goal is empower local community for effective marine resource management. However, one major barriers coral conservation lack timely affordable population‐level health data, which can delay management responses. Although progress been made understanding molecular basis outcomes, more translational work needed cost‐effective, point‐of‐care (POC) diagnostic tools real‐time monitoring. This review assesses current state omics‐based research monitoring, focusing on highlighting key gaps actionable next steps guide implementation effective, field‐ready monitoring disease, reproduction, thermal stress. These advancements be used advance urgent needs promote by communities.

Language: Английский

Citations

0
Contaminant or goldmine? In silico assessment of Symbiodiniaceae community using coral hologenomes DOI Creative Commons
H Ishida, Cynthia Riginos, Cheong Xin Chan

et al.

Frontiers in Protistology, Journal Year: 2024, Volume and Issue: 2

Published: April 2, 2024

Endosymbiotic dinoflagellates of the family Symbiodiniaceae are symbionts essential to corals and other marine organisms. A coral holobiont consists host, Symbiodiniaceae, microbes that together sustain overall productivity health. Coral hologenome data, generated from all interacting components a holobiont, key for elucidating molecular mechanisms underpin resilience changing environments. Although data often dominated by host genomic sequences, they provide an avenue recovering sequences in hospite . Here, we review recent advances approaches assessing community diversity data. Using case study based on existing datasets Acropora kenti coral, highlight how large numbers can useful analysis platform their function holobionts.

Language: Английский

Citations

1
Multiomics data integration, limitations, and prospects to reveal the metabolic activity of the coral holobiont DOI Creative Commons
Amanda Williams

FEMS Microbiology Ecology, Journal Year: 2024, Volume and Issue: 100(5)

Published: April 10, 2024

Abstract Since their radiation in the Middle Triassic period ∼240 million years ago, stony corals have survived past climate fluctuations and five mass extinctions. Their long-term survival underscores inherent resilience of corals, particularly when considering nutrient-poor marine environments which they thrived. However, coral bleaching has emerged as a global threat to survival, requiring rapid advancements research understand holobiont stress responses allow for interventions before extensive occurs. This review encompasses potential, well limits, multiomics data applications applied holobiont. Synopses how different omics tools been date current restrictions are discussed, addition ways these may be overcome, such recruiting new technology studies, utilizing novel bioinformatics approaches, generally integrating data. Lastly, this presents considerations design studies support lab-to-field marker monitoring systems. Although much mechanism eluded investigation date, multiomic already produced key findings regarding holobiont’s response, potential advance field further.

Language: Английский

Citations

0