International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(23), P. 12929 - 12929
Published: Dec. 1, 2024
Clear
cell
renal
carcinoma
(ccRCC)
is
the
most
common
kidney
malignancy,
with
a
poor
prognosis
for
advanced-stage
patients.
Identifying
key
biomarkers
involved
in
tumor
progression
crucial
improving
treatment
outcomes.
In
this
study,
we
employed
an
integrated
approach
combining
single-cell
RNA
sequencing
(scRNA-seq)
and
bulk
(bulk
RNA-seq)
to
identify
associated
ccRCC
prognosis.
Single-cell
transcriptomic
data
were
obtained
from
publicly
available
datasets,
genes
related
screened
using
Monocle2.
Bulk
RNA-seq
retrieved
The
Cancer
Genome
Atlas
(TCGA)
scRNA-seq
explore
heterogeneity.
We
identified
3
beta-hydroxy
steroid
dehydrogenase
type
7
(HSD3B7)
as
candidate
biomarker
ccRCC,
overall
survival,
disease-specific
progression-free
interval.
Elevated
HSD3B7
expression
correlated
aggressive
clinical
features
such
advanced
TNM
stages,
histologic
grades,
metastasis.
Functional
studies
demonstrated
that
promotes
proliferation,
migration,
invasion
vitro,
while
its
silencing
significantly
inhibits
growth
vivo.
Our
findings
reveal
novel
providing
insights
into
role
potential
target
therapy.
This
study
highlights
value
of
integrating
uncover
regulators
biology
lays
foundation
developing
personalized
therapeutic
strategies
Journal of Hematology & Oncology,
Journal Year:
2025,
Volume and Issue:
18(1)
Published: Jan. 23, 2025
Gastric
cancer
remains
a
significant
global
health
challenge,
with
Helicobacter
pylori
(H.
pylori)
recognized
as
major
etiological
agent,
affecting
an
estimated
50%
of
the
world's
population.
There
has
been
rapidly
expanding
knowledge
molecular
and
pathogenetic
mechanisms
H.
over
decades.
This
review
summarizes
latest
research
advances
to
elucidate
underlying
infection
in
gastric
carcinogenesis.
Our
investigation
reveals
complex
network
involving
STAT3,
NF-κB,
Hippo,
Wnt/β-catenin
pathways,
which
are
dysregulated
caused
by
pylori.
Furthermore,
we
highlight
role
inducing
oxidative
stress,
DNA
damage,
chronic
inflammation,
cell
apoptosis—key
cellular
events
that
pave
way
for
Emerging
evidence
also
suggests
effect
on
tumor
microenvironment
its
possible
implications
immunotherapy.
synthesizes
current
identifies
gaps
warrant
further
investigation.
Despite
progress
our
previous
development
pylori-induced
cancer,
comprehensive
pylori's
is
crucial
advancement
prevention
treatment
strategies.
By
elucidating
these
mechanisms,
aim
provide
more
in-depth
insights
study
pylori-related
cancer.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
15
Published: Jan. 9, 2025
Colon
adenocarcinoma
(COAD)
is
a
malignancy
with
high
mortality
rate
and
complex
biological
characteristics
heterogeneity,
which
poses
challenges
for
clinical
treatment.
Anoikis
type
of
programmed
cell
death
that
occurs
when
cells
lose
their
attachment
to
the
extracellular
matrix
(ECM),
it
plays
crucial
role
in
tumor
metastasis.
However,
specific
link
between
anoikis
COAD,
as
well
its
mechanisms
progression,
remains
unclear,
making
potential
new
direction
therapeutic
strategy
research.
We
employed
transcriptomic
data
information
from
The
Cancer
Genome
Atlas
(TCGA)
Gene
Expression
Omnibus
(GEO)
pinpoint
differentially
expressed
anoikis-related
genes
(ARGs)
COAD.
Using
Cox
proportional
hazards
models
Lasso
regression
analysis,
we
developed
prognostic
signature
derived
these
ARGs.
also
investigated
roles
interactions
microenvironment
by
analyzing
single-cell
RNA
sequencing
data.
Additionally,
molecular
docking
techniques
evaluate
inhibin
subunit
beta
B
(INHBB)
targets
assess
binding
affinity
candidate
drugs.
Finally,
used
gene
knockout
silence
key
INHBB
explored
functions
vitro.
In
our
study,
expression
differences
ARGs,
successfully
classified
patients
Kaplan-Meier
survival
analysis
demonstrated
elevated
risk
scores
experienced
poorer
prognosis,
finding
was
confirmed
both
training
validation
cohorts.
immune
infiltration
revealed
notable
increase
presence
within
high-risk
patients.
Molecular
identified
drug
candidates
INHBB,
including
risperidone.
Furthermore,
vitro
experiments
showed
downregulation
COAD
lines
significantly
reduced
cellular
viability
migration
capacity.
summary,
research,
based
on
provides
insights
into
precise
classification,
prognosis
assessment,
identification
It
validates
progression
establishing
foundation
future
personalized
treatment
strategies.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
16
Published: March 7, 2025
Background
Gastric
cancer
(GC)
remains
a
leading
cause
of
cancer-related
mortality,
with
over
one
million
new
cases
and
769,000
deaths
reported
in
2020.
Despite
advancements
chemotherapy,
surgery,
targeted
therapies,
delayed
diagnosis
due
to
overlooked
early
symptoms
leads
poor
prognosis.
Methods
We
integrated
bulk
RNA
sequencing
single-cell
datasets
from
TCGA,
GEO,
OMIX001073,
employing
normalization,
batch
effect
correction,
dimensionality
reduction
methods
identify
key
cell
populations
associated
GC
invasion
epithelial-mesenchymal
transition
(EMT),
as
well
analyze
the
tumor
immune
microenvironment.
Results
Our
analysis
identified
MUC5AC+
malignant
epithelial
cluster
significant
player
EMT.
Cluster
1,
representing
this
population,
exhibited
higher
EMT
scores
compared
other
clusters.
Survival
showed
that
high
abundance
0
correlated
improved
survival
rates
(P=0.012),
whereas
1
was
poorer
outcomes
(P=0.045).
A
prognostic
model
highlighted
ANXA5
GABARAPL2
two
critical
genes
upregulated
tumors.
High-risk
patients
demonstrated
increased
infiltration
worse
prognosic.
Analysis
mutation
burden
(TMB)
indicated
low
TMB
high-risk
group
had
worst
Wet-lab
validation
experiments
confirmed
oncogenic
role
ANXA5,
showing
its
facilitation
proliferation,
invasion,
migration
while
suppressing
apoptosis.
Conclusion
This
study
offers
novel
insights
into
subpopulations
cells
their
roles
progression.
It
provides
potential
therapeutic
targets
combat
GC,
contributing
crucial
understanding
fundamental
mechanisms
drug
resistance
gastrointestinal
cancers.
Cancer Medicine,
Journal Year:
2025,
Volume and Issue:
14(5)
Published: March 1, 2025
Cancer
development
is
closely
associated
with
complex
alterations
in
the
tumor
microenvironment
(TME).
Among
these,
immune
cells
within
TME
play
a
huge
role
personalized
diagnosis
and
treatment.
This
review
aims
to
summarize
diversity
of
TME,
their
impact
on
patient
prognosis
treatment
response,
contributions
single-cell
RNA
sequencing
(scRNA-seq)
understanding
functional
heterogeneity.
We
analyzed
recent
studies
utilizing
scRNA-seq
investigate
cell
populations
focusing
interactions
regulatory
mechanisms.
ScRNA-seq
reveals
heterogeneity
cells,
enhances
our
antibody
responses,
facilitates
construction
interaction
networks.
These
insights
provide
guidance
for
cancer
immunotherapies
approaches.
Applying
analysis
offers
novel
pathway
Despite
its
promise,
several
challenges
remain,
highlighting
need
further
advancements
fully
integrate
into
clinical
applications.
Cell Communication and Signaling,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: Jan. 6, 2025
Macrophages
play
a
crucial
role
in
chronic
gastritis
induced
by
the
pathogenic
Helicobacter
pylori
(H.
pylori)
infection.
NLRP3
inflammasome
has
emerged
as
an
important
component
of
inflammatory
processes.
However,
molecular
mechanism
which
H.
infection
drives
and
macrophages
activation
remains
unclear.
Human
tissues
were
collected
for
clinical
significance
NLRP3.
Infection
with
was
performed
using
vitro
vivo
models.
Bone
marrow-derived
(BMDMs)
from
wild-type
(WT),
Nlrp3-knockout
(KO)
Tnfr1-KO
mice
infected
pylori.
Western
blotting,
qRT-PCR,
immunofluorescence,
immunohistochemistry
ELISA
utilized
functional
mechanistic
studies.
Single-cell
RNA
sequencing
(ScRNA-seq)
analysis
human
gastric
tissues,
followed
validation,
indicated
that
primarily
expressed
myeloid
cells
significantly
increased
pylori-positive
compared
to
pylori-negative
gastritis.
PMSS1
NCTC11637
strains
(THP1
cells)
insulin-gastrin
(INS-GAS)
transgenic
mouse
model.
Deletion
BMDMs
showed
marked
inhibition
pylori-induced
M1
macrophage
polarization.
Furthermore,
upon
TNFα,
or
stimulation,
partially
blocked
TNFα/TNFR1
signaling
inhibitors.
TNFR1
impaired
This
study
revealed
inflammasome,
regulated
TNF/TNFR1
axis,
is
key
regulator
Journal of Translational Medicine,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: Feb. 4, 2025
Abstract
Purpose
To
identify
key
cellular
changes
and
molecular
events
in
atrophic
mucosa,
we
aimed
to
elucidate
the
mechanisms
driving
occurrence
of
chronic
gastritis
(CAG).
Methods
We
used
single-cell
RNA
sequencing
(scRNA-seq)
characterize
epithelial
state
tissue
microenvironment
associated
with
CAG.
The
were
identified
by
comparing
differentially
expressed
genes
(DEGs)
between
two
mucosa
states.
Gene
Ontology
(GO)
pathway
enrichment
analysis
was
explore
potential
functional
each
cell
subtype
mucosa.
set
score
conducted
compare
roles
different
fibroblast
subtypes
CAG
control
groups.
Metabolic
performed
metabolic
activity
C1Q
+
macrophages
under
conditions.
NichNet
analyze
regulatory
relationships
CCL11
APOE
fibroblasts
CD8
effector
T
cells.
Transcription
factor
(TF)
determine
transcription
status
T-cell
normal
Results
generated
a
transcriptomic
atlas
from
3
biopsy
samples
paired
adjacent
tissues.
Our
revealed
that
chief
cells
parietal
exhibited
loss
detoxification
ability
surface
mucous
displayed
reduced
antimicrobial
defense
lesions.
neck
lesions
showed
upregulation
related
cycle
transition,
which
may
lead
aberrant
DNA
replication.
Additionally,
exhaustion
phenotype
infiltrated
condition.
phagocytosis,
downregulated
expression
pattern
recognition
receptors
decreased
activity.
subpopulation
CXCL11
regulated
inflammatory
response
pathogenesis
gastritis.
APSN
found
be
gastric
cancer
(GC)
development.
Conclusions
main
goal
this
study
comprehensively
observed
an
immune
decline
mucosal
during
development
CAG,
including
macrophages,
cytotoxicity
cells,
increased
infiltration
exhausted
Specifically,
demonstrated
aberrantly
express
susceptibility
external
bacterial
infection
progression.
provides
new
insights
into
functions
alterations
Biology of Sex Differences,
Journal Year:
2025,
Volume and Issue:
16(1)
Published: Feb. 21, 2025
Abstract
Background
Accumulating
evidence
indicates
that
the
dysbiosis
of
gastrointestinal
microbiota
is
associated
with
development
gastric
carcinogenesis.
However,
sex-specific
traits
and
their
correlation
sexually
dimorphic
response
to
cancer
remain
poorly
understood.
Methods
Male
female
transgenic
FVB/N
insulin-gastrin
(INS-GAS)
mice
as
a
model
were
randomly
administered
Brucella
Broth
or
Helicobacter
pylori
(
H.
).
Stomachs
evaluated
by
histopathology.
The
inflammation
was
examined
immunohistochemical
immunofluorescence
staining.
Gastric
mucosal
fecal
samples
collected
for
analysis
using
16S
rRNA
gene
sequencing.
Results
Following
infection,
male
showed
heightened
inflammatory
infiltration
notably
greater
intestinal
metaplasia
compared
mice.
structure
different
between
mice,
relative
higher
diversity
in
females
than
males.
Notably,
we
found
gender
disparities
alterations
post
infection.
While
enrichment
Bifidobacterium
Lachnospiraceae
observed
Escherichia_Shigella
Akkermansia
more
abundant
Furthermore,
microbial
profile
distinct
estrogen-deficient
ovariectomized
(OVX)
including
overgrowth
loss
Butyricicoccus
.
Infected
OVX
developed
significantly
severe
lesions,
which
normalized
through
co-housing
intact
females.
Conclusions
We
have
identified
novel
microbiome-based
mechanism
provides
insight
into
sexual
dimorphism
-associated
cancer.
Cancer Medicine,
Journal Year:
2025,
Volume and Issue:
14(8)
Published: April 1, 2025
ABSTRACT
Introduction
Distant
metastasis
is
the
main
reason
for
poor
prognosis
of
gastric
cancer,
and
anoikis
refers
to
cell
death
caused
when
cells
detach
from
extracellular
matrix
or
adhere
in
incorrect
locations,
playing
an
important
role
distant
cancer.
Methods
Download
TCGA‐STAD
dataset
gene
set,
filter
out
differentially
expressed
genes.
Perform
consensus
clustering
cancer
samples,
conduct
Weighted
Gene
Correlation
Network
Analysis
(WGCNA),
enrichment
analysis,
immune
infiltration
analysis
expression
characteristics
each
subtype,
while
also
filtering
genes
with
differential
between
subtypes.
Additionally,
through
COX
survival
identify
related
establish
a
nomogram.
Finally,
validate
CYP1B1
vivo
vitro
clinical
culture,
establishment
model.
Results
Three
subtypes
were
identified,
exhibiting
different
characteristics,
biological
pathways,
infiltration.
The
abundance
activated
NK
cells,
memory
B
M2
macrophages
showed
significant
differences
among
three
We
screened
four
sets
five
(CYP1B1,
EQTN,
NRXN2,
TBC1D3E,
TCEAL5)
Through
we
identified
33
independent
prognostic
constructed
nomogram,
calibration
curves
indicating
good
consistency.
selected
experimental
validation,
experiments
demonstrated
that
highly
participates
resistance
promotes
invasion,
migration,
tumor
progression
cells.
Conclusion
patterns
based
on
vary,
providing
theoretical
support
future
personalized
treatment
Frontiers in Oncology,
Journal Year:
2025,
Volume and Issue:
15
Published: April 29, 2025
Gastric
cancer
is
the
fifth
most
common
worldwide,
and
its
lack
of
specific
symptoms
presents
a
significant
challenge
for
early
diagnosis.
Therefore,
identification
detection
precancerous
lesions
gastric
(PLGC)
are
essential
prevention.
We
performed
comprehensive
bibliometric
analysis
to
explore
research
trends
emerging
topics
in
this
field,
aiming
deepen
our
understanding
PLGC.
This
study
utilizes
approach
with
network
progress
PLGC
research.
The
findings
aim
provide
foundation
guidance
further
in-depth
investigations
into
used
VOSviewer
CiteSpace
software
collect
relevant
literature
on
from
Web
Science
Core
Collection,
covering
period
2005
2024.
Data
visualization
was
number
publications,
countries,
institutions,
journals,
authors,
keywords,
citation
counts
these
articles.
A
total
1,141
articles
were
included
analysis.
results
showed
year-on-year
increase
publications
country,
institution,
author,
journal
highest
publication
output
field
China,
Peking
University,
Wei-Cheng
You,
World
Journal
Gastroenterology,
respectively.
frequently
occurring
keywords
"Helicobacter
pylori,"
"intestinal
metaplasia,"
"risk,"
"infection,"
"atrophic
gastritis."
Additionally,
"chronic
atrophic
gastritis"
"inflammation"
have
emerged
as
hot
future
highlights
research,
valuable
studies.
Our
indicate
that
mechanistic
studies
clinical
diagnosis
will
be
key
areas
focus
upcoming