The diversity pattern of soil bacteria in the rhizosphere of different plants in mountain ecosystems DOI Creative Commons

Maryamgul Yasen,

Mingyuan Li, Jilian Wang

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 19, 2024

Abstract Research on the composition and diversity of rhizosphere microbial communities different plant species can help to identify important functional groups or potentials, which is great significance for vegetation restoration ecological reconstruction. To provide scientific basis management mountain ecosystem, pattern bacterial community was investigated using 16S rRNA high-throughput sequencing method among host plants (Cirsium japonicum, Artemisia annua, Descurainia sophia, Lepidium apetalum, Phlomis umbrosa, Carum carvi) in Tomur Peak National Nature Reserve, China. The results showed that richness bacteria were highest lowest apetalum. Proteobacteria, Acidobacteriota, Actinobacteria common dominant phyla, Sphingomonas predominant genera. Furthermore, there some specific genera plants. relative abundance non-dominant varied species. Canonical correspondence analysis indicated available (AK), total phosphorus (TP), potassium (TK), soil organic matter (SOM) main drivers structure. Based PICRUSt prediction, all samples encompass six primary metabolic pathways 47 secondary pathways. major (with a gene sequences > 3%) include 15 categories. Co-occurrence network revealed differences interactions modules, with microorganisms exhibiting distinct advantages. This study elucidates distribution patterns ecosystems, provides theoretical guidance protection based microbiome.

Language: Английский

Bacterial Community Composition and Presence of Plasmids in the Endosphere- and Rhizosphere-Associated Microbiota of Sea Fig (Carpobrotus aequilaterus) DOI Creative Commons
Ángela M. Sánchez-Salazar, Jacquelinne J. Acuña, Michael J. Sadowsky

et al.

Diversity, Journal Year: 2023, Volume and Issue: 15(11), P. 1156 - 1156

Published: Nov. 20, 2023

The plant microbiome is one of the most important environments for ecological interactions between bacteria that impact and ecosystem. However, studies on diversity mobile genetic elements (such as plasmids) associated with are very scarce. Here, we determined bacterial community composition occurrence plasmids in microbiota sea fig, Carpobrotus aequilaterus (N.E. Br.), a succulent species widely used an ornamental Chile. abundance endophytic rhizospheric communities were by quantitative PCR (qPCR) DNA metabarcoding analysis. Plasmid was plasmid extraction screened endpoint backbone genes four different incompatibility groups (Inc). results showed about 106 copies 16S rRNA gene endosphere rhizosphere, showing significant differences according to index. Proteobacteria (Pseudomonadota; 43.4%), Actinobacteria (Actinomycetota; 25.7%), Bacteroidetes (Bacteroidota; 17.4%) dominant taxa both compartments, chemoheterotrophy (30%) main predicted function assigned microbiota. analysis presence transferable rhizosphere C. aequilaterus, particularly among environmental belonging IncP IncN groups.

Language: Английский

Citations

2
The rhizosphere and root selections intensify fungi-bacteria interaction in abiotic stress-resistant plants DOI Creative Commons
Feng Huang,

Mengying Lei,

Wen Li

et al.

PeerJ, Journal Year: 2024, Volume and Issue: 12, P. e17225 - e17225

Published: April 15, 2024

The microbial communities, inhabiting around and in plant roots, are largely influenced by the compartment effect, turn, promote growth stress resistance of plant. However, how soil microbes selected to rhizosphere, further into roots is still not well understood. Here, we profiled fungal, bacterial communities their interactions bulk soils, rhizosphere soils eleven stress-resistant species after six months growth. results showed that root selection (from roots) was stronger than soils) in: (1) filtering stricter on fungal (28.5% 40.1%) (48.9% 68.1%) amplicon sequence variants (ASVs), (2) depleting more shared (290 56) (691 2) ASVs measured relative abundance, (3) increasing significant fungi-bacteria crosskingdom correlations (142 110). In addition, selection, but significantly increased fungi bacteria ratios (f:b) observed shannon diversity index, indicating unbalanced effects exerted selection. Based network analysis, were associated with numbers negative interaction (140 99) (123 92), suggesting intensifies roots. Our findings provide insights complexity improve understanding microbiome assembly

Language: Английский

Citations

0
Host plant traits play a crucial role in shaping the composition of epiphytic microbiota in the arid desert, Northwest China DOI
Jun Zhang, Yuanming Zhang, Qi Zhang

et al.

Journal of Arid Land, Journal Year: 2024, Volume and Issue: 16(5), P. 699 - 724

Published: May 1, 2024

Language: Английский

Citations

0
Potential Plant-to-Plant Transmission: Shared Endophytic Bacterial Community between Ziziphus lotus and its Parasite Cuscuta epithymum DOI Creative Commons
Nabil Radouane, Khaoula Errafii‬, Salma Mouhib

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: May 24, 2024

Abstract Microbiota associated with host–parasite relationships offer an opportunity to explore interactions among plants, parasites, and microbes, thereby contributing the overall complexity of community structures. The dynamics ecological between parasitic plants their hosts in arid environments remain largely understudied, especially Africa. This study aimed examine bacterial communities Cuscuta epithymum L. (clover dodder), epiphytic plant, its host, Ziziphus lotus L. (jujuba),in environment. Our goal was uncover complexities microbial within framework plant–plant interactions. We conducted a comprehensive analysis composition diversity populations C. parasite, infected- non-infected jujuba interface at shoots host. involved amplicon sequencing, targeting V5–V6 regions 16S rRNA gene. A total 5680 sequence variants (ASVs) were identified, Pseudomonadota, Bacillota, Actinobacteriota being prevalent phyla. Among communities, three genera dominant: Cutibacterium, Staphylococcus, Acinetobacter. Interestingly, analyses alpha- beta-diversities revealed no significant difference suggesting shared shoot endophytic bacteriome. finding advances our comprehension linked plant–parasite Further studies on functional elucidation mechanisms by which transfer host parasite are needed.

Language: Английский

Citations

0
Dysbiosis in Maize Leaf Endosphere Microbiome is Associated with Domestication DOI
İlksen Topçu, Julio S. Bernal,

Sanjay Antony-Babu

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 12, 2024

Abstract Background The effect of domestication and breeding on maize leaf endosphere microbiota is scarcely understood, a knowledge gap vital to be filled given their roles in plant health. We examined the microbial communities associated with three plant-groups; teosinte, landraces elite inbred maize, latter including both Mexican US lines. Particularly, we used 16S-V4 region amplicon sequencing microbiomes infer how community may have been shaped by crop’s evolution, whether they were affected by: (i) transition from perennial life history an annual wild; (ii) transformation into landrace via domestication; (iii) northward spread Mexico US; maizes produce inbreds. Additionally, investigated biomarker taxa, likely functional profiles using LEfSe analysis, network FAPROTAX. Results differed among plant-groups genotypes, was markedly domestication, as indicated decline bacterial diversity changes structure between wild (teosinte) domesticated (maize) Zea. While highly stringent regulated teosintes, post-domestication inbreds showed high variability, suggesting dysbiosis consistent predictions Anna Karenina principle. As such, this finding marks first evidence domestication. Co-occurrence analyses revealed complexity increased Furthermore, FAPROTAX suggested that teosintes possessed higher cellulolytic, chitinolytic, nitrate respiration functions, while fermentation reduction functions. Conclusions Our results structures are alterations dysbiosis. Altogether, our findings enhanced understanding effects anthropogenic processes such crop spread, cultivars, guide development evolutionarily- ecologically sustainable biofertilizers biocontrol agents.

Language: Английский

Citations

0
Potential Plant-To-Plant Transmission: Shared Endophytic Bacterial Community Between Ziziphus lotus and Its Parasite Cuscuta epithymum DOI Creative Commons
Nabil Radouane, Khaoula Errafii‬, Salma Mouhib

et al.

Microbial Ecology, Journal Year: 2024, Volume and Issue: 87(1)

Published: Sept. 28, 2024

Language: Английский

Citations

0
Microbial Community of Wilted Fritillaria ussuriensis and Biocontrol Effects of Bacillus tequilensis and Trichoderma koningiopsis DOI Creative Commons
Hao Wu, Jingjing Lu, Simeng Zhao

et al.

Biology, Journal Year: 2024, Volume and Issue: 13(11), P. 940 - 940

Published: Nov. 17, 2024

The cultivation of

Language: Английский

Citations

0
The effect of soil microbial functional groups, abiotic and biotic factors on plant functional groups: insights from a tropical rainforest in Southwest China DOI

Yanxuan Chen,

Xiaobo Huang, Rong Tang

et al.

Plant and Soil, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 27, 2024

Language: Английский

Citations

0
The diversity pattern of soil bacteria in the rhizosphere of different plants in mountain ecosystems DOI Creative Commons

Maryamgul Yasen,

Mingyuan Li, Jilian Wang

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 19, 2024

Abstract Research on the composition and diversity of rhizosphere microbial communities different plant species can help to identify important functional groups or potentials, which is great significance for vegetation restoration ecological reconstruction. To provide scientific basis management mountain ecosystem, pattern bacterial community was investigated using 16S rRNA high-throughput sequencing method among host plants (Cirsium japonicum, Artemisia annua, Descurainia sophia, Lepidium apetalum, Phlomis umbrosa, Carum carvi) in Tomur Peak National Nature Reserve, China. The results showed that richness bacteria were highest lowest apetalum. Proteobacteria, Acidobacteriota, Actinobacteria common dominant phyla, Sphingomonas predominant genera. Furthermore, there some specific genera plants. relative abundance non-dominant varied species. Canonical correspondence analysis indicated available (AK), total phosphorus (TP), potassium (TK), soil organic matter (SOM) main drivers structure. Based PICRUSt prediction, all samples encompass six primary metabolic pathways 47 secondary pathways. major (with a gene sequences > 3%) include 15 categories. Co-occurrence network revealed differences interactions modules, with microorganisms exhibiting distinct advantages. This study elucidates distribution patterns ecosystems, provides theoretical guidance protection based microbiome.

Language: Английский

Citations

0