Roles of RNA Modifications in Diverse Cellular Functions DOI Creative Commons
Emma Wilkinson, Yan‐Hong Cui, Yu‐Ying He

et al.

Frontiers in Cell and Developmental Biology, Journal Year: 2022, Volume and Issue: 10

Published: March 8, 2022

Chemical modifications of RNA molecules regulate both metabolism and fate. The deposition function these are mediated by the actions writer, reader, eraser proteins. At cellular level, several processes including cell death, proliferation, senescence, differentiation, migration, metabolism, autophagy, DNA damage response, liquid-liquid phase separation. Emerging evidence demonstrates that play active roles in physiology etiology multiple diseases due to their pervasive functions. Here, we will summarize recent advances regulatory functional role functions, emphasizing context-specific mammalian systems. As m

Language: Английский

RNA m6A methylation across the transcriptome DOI Creative Commons
Erdem Sendinc, Yang Shi

Molecular Cell, Journal Year: 2023, Volume and Issue: 83(3), P. 428 - 441

Published: Feb. 1, 2023

Language: Английский

Citations

227

Biological roles of adenine methylation in RNA DOI
Konstantinos Boulias, Eric Lieberman Greer

Nature Reviews Genetics, Journal Year: 2022, Volume and Issue: 24(3), P. 143 - 160

Published: Oct. 19, 2022

Language: Английский

Citations

213

RNA modifications: importance in immune cell biology and related diseases DOI Creative Commons
Lian Cui, Rui Ma,

Jiangluyi Cai

et al.

Signal Transduction and Targeted Therapy, Journal Year: 2022, Volume and Issue: 7(1)

Published: Sept. 22, 2022

RNA modifications have become hot topics recently. By influencing processes, including generation, transportation, function, and metabolization, they act as critical regulators of cell biology. The immune abnormality in human diseases is also a research focus progressing rapidly these years. Studies demonstrated that participate the multiple biological processes cells, development, differentiation, activation, migration, polarization, thereby modulating responses are involved some related diseases. In this review, we present existing knowledge functions underlying mechanisms modifications, N6-methyladenosine (m6A), 5-methylcytosine (m5C), N1-methyladenosine (m1A), N7-methylguanosine (m7G), N4-acetylcytosine (ac4C), pseudouridine (Ψ), uridylation, adenosine-to-inosine (A-to-I) editing, summarize their roles Via regulating can pathogenesis diseases, such cancers, infection, inflammatory autoimmune We further highlight challenges future directions based on knowledge. All all, review will provide helpful well novel ideas for researchers area.

Language: Английский

Citations

205

Hidden codes in mRNA: Control of gene expression by m6A DOI Creative Commons

Shino Murakami,

Samie Jaffrey

Molecular Cell, Journal Year: 2022, Volume and Issue: 82(12), P. 2236 - 2251

Published: June 1, 2022

Language: Английский

Citations

193

Dynamic control of chromatin-associated m6A methylation regulates nascent RNA synthesis DOI Creative Commons
Wenqi Xu, Chenxi He, Emily G. Kaye

et al.

Molecular Cell, Journal Year: 2022, Volume and Issue: 82(6), P. 1156 - 1168.e7

Published: Feb. 25, 2022

Language: Английский

Citations

106

RNA m6A regulates transcription via DNA demethylation and chromatin accessibility DOI
Shuang Deng, Jialiang Zhang, Jiachun Su

et al.

Nature Genetics, Journal Year: 2022, Volume and Issue: 54(9), P. 1427 - 1437

Published: Sept. 1, 2022

Language: Английский

Citations

104

Transcription regulation by long non-coding RNAs: mechanisms and disease relevance DOI
Jorge Ferrer, Nadya Dimitrova

Nature Reviews Molecular Cell Biology, Journal Year: 2024, Volume and Issue: 25(5), P. 396 - 415

Published: Jan. 19, 2024

Language: Английский

Citations

91

mRNA Regulation by RNA Modifications DOI Creative Commons

Wendy V. Gilbert,

Sigrid Nachtergaele

Annual Review of Biochemistry, Journal Year: 2023, Volume and Issue: 92(1), P. 175 - 198

Published: April 5, 2023

Chemical modifications on mRNA represent a critical layer of gene expression regulation. Research in this area has continued to accelerate over the last decade, as more are being characterized with increasing depth and breadth. have been demonstrated influence nearly every step from early phases transcript synthesis nucleus through their decay cytoplasm, but many cases, molecular mechanisms involved these processes remain mysterious. Here, we highlight recent work that elucidated roles throughout life cycle, describe gaps our understanding remaining open questions, offer some forward-looking perspective future directions field.

Language: Английский

Citations

80

The IGF2BP family of RNA binding proteins links epitranscriptomics to cancer DOI Creative Commons
Deepthi Ramesh, Sònia Guil

Seminars in Cancer Biology, Journal Year: 2022, Volume and Issue: 86, P. 18 - 31

Published: May 25, 2022

RNA binding proteins that act at the post-transcriptional level display a richness of mechanisms to modulate transcriptional output and respond changing cellular conditions. The family IGF2BP recognize mRNAs modified by methylation lengthen their lifecycle in context stable ribonucleoprotein particles promote cancer progression. They are emerging as key 'reader' epitranscriptomic field, driving fate bound substrates under physiological disease Recent developments field include recognition noncoding play crucial roles mediating pro-growth features family, not only regulated targets, but also modulators function themselves. In this review, we summarize regulatory link molecular role m6A modification readers phenotype, thus providing comprehensive insight into function.

Language: Английский

Citations

73

RNA polymerase II dynamics shape enhancer–promoter interactions DOI
Gilad Barshad, James J. Lewis, Alexandra G. Chivu

et al.

Nature Genetics, Journal Year: 2023, Volume and Issue: 55(8), P. 1370 - 1380

Published: July 10, 2023

Language: Английский

Citations

73