Budding yeast as an ideal model for elucidating the role of N6‐methyladenosine in regulating gene expression DOI Creative Commons
Waleed S. Albihlal, Wei Yee Chan, Folkert J. van Werven

et al.

Yeast, Journal Year: 2024, Volume and Issue: 41(4), P. 148 - 157

Published: Jan. 18, 2024

Abstract N 6 ‐methyladenosine (m6A) is a highly abundant and evolutionarily conserved messenger RNA (mRNA) modification. This modification installed on RRACH motifs mRNAs by hetero‐multimeric holoenzyme known as m6A methyltransferase complex (MTC). The mark then recognised group of proteins the YTH domain family which guide mRNA for subsequent downstream processes that determine its fate. In yeast, thousands during early meiosis MTC m6A‐modified are read domain‐containing protein Mrb1/Pho92. this review, we aim to delve into recent advances in our understanding regulation roles yeast meiosis. We will discuss potential functions translation decay, unravelling their significance regulating gene expression. propose serves an exceptional model organism study fundamental molecular mechanisms related function mRNAs. insights gained from research not only expand knowledge modifications but also offer valuable broader landscape eukaryotic posttranscriptional

Language: Английский

Detection, distribution, and functions of RNA N6-methyladenosine (m6A) in plant development and environmental signal responses DOI Creative Commons

Yang Xiang,

Dian Zhang, Lei Li

et al.

Frontiers in Plant Science, Journal Year: 2024, Volume and Issue: 15

Published: July 16, 2024

The epitranscriptomic mark N 6-methyladenosine (m6A) is the most common type of messenger RNA (mRNA) post-transcriptional modification in eukaryotes. With discovery demethylase FTO (FAT MASS AND OBESITY-ASSOCIATED PROTEIN) Homo Sapiens, this has been proven to be dynamically reversible. technological advances, research on m6A plants also rapidly developed. widely distributed plants, which usually enriched near stop codons and 3'-UTRs, conserved sequences. related proteins mainly consist three components: methyltransferases (writers), demethylases (erasers), reading (readers). regulates growth development by modulating metabolic processes playing an important role their responses environmental signals. In review, we briefly outline detection techniques; comparatively analyze distribution characteristics plants; summarize methyltransferases, demethylases, binding m6A; elaborate how functions plant growth, development, response signals; provide a summary outlook plants.

Language: Английский

Citations

3

Characteristics of N6-methyladenosine modifications during the maturation of free-living conchocelis of Pyropia haitanensis DOI

Yusen Nie,

Yan Xu,

Yinghui Lin

et al.

Aquaculture, Journal Year: 2025, Volume and Issue: unknown, P. 742198 - 742198

Published: Jan. 1, 2025

Language: Английский

Citations

0

Writers, readers, and erasers of N6-Methyladenosine (m6A) methylomes in oilseed rape: identification, molecular evolution, and expression profiling DOI Creative Commons

Chaofan Shan,

Kui Dong,

Dongyu Wen

et al.

BMC Plant Biology, Journal Year: 2025, Volume and Issue: 25(1)

Published: Feb. 4, 2025

m6A RNA modifications are the most prevalent internal in eukaryotic mRNAs and crucial for plant growth development, as well responses to biotic or abiotic stresses. The modification is catalyzed by writers, removed erasers, decoded various m6A-binding proteins, which readers. Brassica napus a major oilseed crop. dynamic regulation of readers offers potential targets improving quality this In study, we identified 92 m6A-regulatory genes B. napus, including 13 29 50 A phylogenetic analysis revealed that they could be further divided into four, three, two clades, respectively. distribution protein motifs gene structures among members same clade exhibited notable similarity. During course evolution, whole genome duplication (WGD) segmental were primary drivers expansion m6A-related families. subjected rigorous purification selection. Additionally, several sites under positive selection proteins. RNA-seq quantitative real-time PCR (qRT-PCR) expression analyses Bnam6As exhibit tissue-specific patterns, their patterns response 2000 bp sequence upstream contained number cis-acting elements regulate environmental response. Furthermore, interaction network interactions with proteins significant functional importance. identification modifiers rape molecular evolution profiling have functions mechanisms m6A, thus establishing foundation validation breeding.

Language: Английский

Citations

0

Modular in vivo assembly of Arabidopsis FCA oligomers into condensates competent for RNA 3’ processing DOI Creative Commons
Geng‐Jen Jang, Alex L. Payne-Dwyer, Robert Maple

et al.

The EMBO Journal, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 24, 2025

Language: Английский

Citations

0

The genetic basis for synchronized time perception in plant populations DOI Creative Commons
Sarah C. L. Lock, Kayla McCarthy, James Ronald

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 25, 2025

Abstract Synchronised developmental timing is important for ensuring crop uniformity and high yields. However, climate change leading to crops being grown at different latitudes, varying their exposures photoperiods over seasons impacting timings. We investigated whether the response of circadian rhythms in seedlings changes photoperiod would enable us predict synchronization flowering. Indeed, we show that same Quantitative Trait Loci (QTLs) are associated traits during bolting, using first recombinant inbred lines (RILs) between African European Arabidopsis lineages, spanning diverse latitudes. Two QTLs contain K-Homology Domain RNA binding proteins (KH17, KH29) with splicing variants known flowering genes, MADS AFFECTING FLOWERING2 3 (MAF2, MAF3), including generating chimeric transcripts, a potential mechanism accelerated proteome evolution. Natural KH17, its prion-like domain, de-coupling mean time, enabling greater adaptation population-level heterogeneity Our results suggest could be used screen agriculturally relevant mature plants, efficient breeding climate-resilient crops.

Language: Английский

Citations

0

The transcriptional regulation of Arabidopsis ECT8 by ABA-Responsive Element binding transcription factors in response to ABA and abiotic stresses DOI

Jiexuan Zheng,

D X Wen,

Chuang Tang

et al.

Physiology and Molecular Biology of Plants, Journal Year: 2025, Volume and Issue: 31(3), P. 343 - 355

Published: March 1, 2025

Language: Английский

Citations

0

RNA m6A modification meets plant hormones DOI
Lisha Shen, Hao Yu

Nature Plants, Journal Year: 2025, Volume and Issue: unknown

Published: March 28, 2025

Language: Английский

Citations

0

A comprehensive review of m6A modification in plant development and potential quality improvement DOI

Chaofan Shan,

Kui Dong,

Dongyu Wen

et al.

International Journal of Biological Macromolecules, Journal Year: 2025, Volume and Issue: unknown, P. 142597 - 142597

Published: March 1, 2025

Language: Английский

Citations

0

RNA modification: A contemporary review of pseudouridine (Ψ) and its role in functional plant biology DOI

Ahsan U. Khan,

Gatera Anicet,

Hafiz Umair Asdullah

et al.

Plant Science, Journal Year: 2025, Volume and Issue: 356, P. 112522 - 112522

Published: April 25, 2025

Language: Английский

Citations

0

The regulation and impact of mRNA m6A methylation during the expansion and ripening of tomato fruits under various abiotic stresses DOI Creative Commons

Rongpeng Han,

Thi Kim Hang Nguyen,

Hunseung Kang

et al.

Horticultural Plant Journal, Journal Year: 2025, Volume and Issue: unknown

Published: May 1, 2025

Language: Английский

Citations

0