bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: July 24, 2023
Neuroimaging
is
commonly
used
to
infer
human
brain
connectivity,
but
those
measurements
are
far-removed
from
the
molecular
underpinnings
at
synapses.
To
uncover
basis
of
we
analyzed
a
unique
cohort
98
individuals
who
provided
neuroimaging
and
genetic
data
contemporaneous
with
dendritic
spine
morphometric,
proteomic,
gene
expression
superior
frontal
inferior
temporal
gyri.
Through
cellular
contextualization
morphology,
identified
hundreds
proteins
related
synapses,
energy
metabolism,
RNA
processing
that
explain
between-individual
differences
in
functional
connectivity
structural
covariation.
By
integrating
genetic,
molecular,
subcellular,
tissue
levels,
bridged
divergent
fields
biology
identify
connectivity.
Journal of Alzheimer s Disease,
Journal Year:
2021,
Volume and Issue:
82(4), P. 1417 - 1450
Published: July 16, 2021
Porphyromonas
gingivalis
(Pg)
is
a
primary
oral
pathogen
in
the
widespread
biofilm-induced
"chronic"
multi-systems
inflammatory
disease(s)
including
Alzheimer's
disease
(AD).
It
possibly
only
second
identified
unique
example
of
biological
extremophile
human
body.
Having
better
understanding
key
microbiological
and
genetic
mechanisms
its
pathogenesis
induction
are
central
to
future
diagnosis,
treatment,
possible
prevention.
The
published
literature
around
role
Pg
AD
highlights
bacteria's
direct
within
brain
cause
disease.
available
evidence,
although
somewhat
adopted,
does
not
fully
support
this
as
major
process.
There
alternative
pathogenic/virulence
features
associated
with
that
have
been
overlooked
may
explain
pathogenic
processes
found
"infection
hypothesis"
AD.
A
explanation
offered
here
for
discrepancy
relatively
low
amounts
"Pg
bacteria"
residing
compared
rather
florid
broad
distribution
one
or
more
bacterial
protein
toxins.
Related
this,
"Gingipains
Hypothesis",
AD-related
iron
dyshomeostasis,
early
reduced
salivary
lactoferrin,
along
resurrection
Cholinergic
Hypothesis
now
be
integrated
into
working
model.
current
paper
suggests
highly
evolved
developed
Type
IX
secretory
cargo
system
producing
outer
membrane
vesicles
observed
diseases.
Thus
it
hoped
can
provide
unifying
model
sporadic
form
guide
direction
research,
Life,
Journal Year:
2022,
Volume and Issue:
13(1), P. 24 - 24
Published: Dec. 22, 2022
Brain
tumors
are
a
widespread
and
serious
neurological
phenomenon
that
can
be
life-
threatening.
The
computing
field
has
allowed
for
the
development
of
artificial
intelligence
(AI),
which
mimic
neural
network
human
brain.
One
use
this
technology
been
to
help
researchers
capture
hidden,
high-dimensional
images
brain
tumors.
These
provide
new
insights
into
nature
improve
treatment
options.
AI
precision
medicine
(PM)
converging
revolutionize
healthcare.
potential
cancer
imaging
interpretation
in
several
ways,
including
more
accurate
tumor
genotyping,
precise
delineation
volume,
better
prediction
clinical
outcomes.
AI-assisted
surgery
an
effective
safe
option
treating
This
review
discusses
various
PM
techniques
used
treatment.
tumors,
i.e.,
genomic
profiling,
microRNA
panels,
quantitative
imaging,
radiomics,
hold
great
promise
future.
However,
there
challenges
must
overcome
these
technologies
reach
their
full
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: June 18, 2024
Abstract
Approximately
40%
of
dementia
cases
could
be
prevented
or
delayed
by
modifiable
risk
factors
related
to
lifestyle
and
environment.
These
factors,
such
as
depression
vascular
disease,
do
not
affect
all
individuals
in
the
same
way,
likely
due
inter-individual
differences
genetics.
However,
precise
nature
how
genetic
profiles
interact
with
brain
health
is
poorly
understood.
Here
we
combine
multiple
data
resources,
including
genotyping
postmortem
gene
expression,
map
landscape
structure
identify
367
loci
associated
cortical
thickness
13
white
matter
hyperintensities
(P
<
5×10
−8
),
several
also
showing
a
significant
association
cognitive
function.
We
show
that
among
220
unique
our
genome-wide
studies
(GWAS),
95
showed
evidence
interaction
cardiovascular
conditions.
Polygenic
scores
based
on
GWAS
inferior
frontal
interacted
hypertension
predicting
executive
function
Canadian
Longitudinal
Study
Aging.
findings
advance
understanding
underpinning
for
part
moderated
treatable
mid-life
factors.
Frontiers in Molecular Neuroscience,
Journal Year:
2022,
Volume and Issue:
15
Published: June 10, 2022
Cortical
neuron
loss
is
a
pathological
hallmark
of
late-onset
Alzheimer’s
disease
(AD).
However,
it
remains
unclear
which
neuronal
subtypes
beyond
broad
excitatory
and
inhibitory
classes
are
most
vulnerable.
Here,
we
analyzed
cell
subtype
proportion
differences
in
AD
compared
to
non-AD
controls
using
1037
post-mortem
brain
samples
from
six
neocortical
regions.
We
identified
the
strongest
associations
with
fewer
somatostatin
(SST)
neurons
(β
=
−0.48,
p
bonf
8.98
×
10
–9
)
intra-telencephalic
(IT)
-0.45,
4.32
–7
).
Replication
three
case-control
single-nucleus
RNAseq
datasets
strongly
supported
bulk
tissue
association
SST
AD.
In
depth
analyses
type
proportions
specific
AD-related
neuropathological
cognitive
phenotypes
revealed
greater
brain-wide
tau
beta
amyloid,
as
well
faster
rate
antemortem
decline.
contrast,
IT
were
associated
slower
decline
residual
cognition–a
measure
resilience–but
not
canonical
neuropathology.
Our
findings
implicate
subclasses
pathogenesis
resilience
pathology,
respectively.
Nature Neuroscience,
Journal Year:
2024,
Volume and Issue:
27(11), P. 2240 - 2252
Published: Oct. 31, 2024
Brain
connectivity
arises
from
interactions
across
biophysical
scales,
ranging
molecular
to
cellular
anatomical
network
level.
To
date,
there
has
been
little
progress
toward
integrated
analysis
these
scales.
bridge
this
gap,
a
unique
cohort
of
98
individuals,
we
collected
antemortem
neuroimaging
and
genetic
data,
as
well
postmortem
dendritic
spine
morphometric,
proteomic
gene
expression
data
the
superior
frontal
inferior
temporal
gyri.
Through
integration
morphology
identified
hundreds
proteins
that
explain
interindividual
differences
in
functional
structural
covariation.
These
are
enriched
for
synaptic
structures
functions,
energy
metabolism
RNA
processing.
By
integrating
at
genetic,
molecular,
subcellular
tissue
levels,
link
specific
biochemical
changes
synapses
between
brain
regions.
results
demonstrate
feasibility
vastly
different
scales
provide
more
comprehensive
understanding
connectivity.
Integration
morphological
measurements
enables
detection
microscale
molecules
associated
with
person-to-person
variability
macroscale
estimated
neuroimaging.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 27, 2025
Abstract
Microproteins,
short
functional
peptides
encoded
by
small
genes,
are
emerging
as
critical
regulators
of
cellular
processes,
yet
their
roles
in
mitochondrial
function
and
neurodegeneration
remain
underexplored.
In
this
study,
we
identify
NCBP2-AS2
an
evolutionarily
conserved
microprotein
with
significant
energy
metabolism
neurogenesis.
Using
a
combination
molecular
approaches,
including
CRISPR/Cas9
knockout
models,
stoichiometric
co-
immunoprecipitation,
advanced
imaging
techniques,
demonstrate
that
localizes
to
the
inner
space
interacts
translocase
membrane
(TIM)
chaperones.
These
interactions
suggest
role
ATPase
subunit
transport,
supported
observed
reductions
levels
impaired
glucose
NCBP2-AS2-deficient
cells.
zebrafish,
led
increased
astroglial
proliferation,
microglial
abundance,
enhanced
neurogenesis,
particularly
under
amyloid
pathology.
Notably,
show
expression
is
consistently
downregulated
human
Alzheimer’s
disease
brains
zebrafish
amyloidosis
suggesting
neurodegenerative
findings
reveal
novel
link
between
protein
metabolism,
neural
regeneration,
positioning
potential
therapeutic
target
for
mitigating
dysfunction
promoting
neurogenesis
diseases
such
disease.
Nature Communications,
Journal Year:
2025,
Volume and Issue:
16(1)
Published: Feb. 25, 2025
Abstract
The
clinical
course
and
treatment
of
neurodegenerative
disease
are
complicated
by
immune-system
interference
chronic
inflammatory
processes,
which
remain
incompletely
understood.
Mapping
immune
signatures
in
larger
human
cohorts
through
single-cell
gene
expression
profiling
supports
our
understanding
observed
peripheral
changes
neurodegeneration.
Here,
we
employ
over
909k
blood
mononuclear
cells
(PBMCs)
from
121
healthy
individuals,
48
patients
with
mild
cognitive
impairment
(MCI),
46
Parkinson’s
(PD),
27
Alzheimer’s
(AD),
15
both
PD
MCI.
dataset
is
interactively
accessible
a
freely
available
website
(
https://www.ccb.uni-saarland.de/adrcsc
).
In
this
work,
identify
disease-associated
cell
type
composition
the
sex-specific
manner,
offering
insights
into
solid
tissue
AD
PD.
Alzheimer s & Dementia,
Journal Year:
2025,
Volume and Issue:
21(3)
Published: March 1, 2025
We
systematically
reviewed
and
meta-analyzed
bulk
RNA
sequencing
(RNAseq)
studies
comparing
Alzheimer's
disease
(AD)
patients
to
controls
in
human
brain
tissue.
searched
PubMed,
Web
of
Science,
Scopus
for
RNAseq
studies,
excluding
re-analyses
limited
small
RNAs
or
gene
panels.
developed
10
criteria
quality
assessment
performed
a
meta-analysis
on
three
high-quality
datasets.
Of
3266
records,
24
qualified
the
systematic
review,
one
study
with
datasets
meta-analysis.
The
identified
571
differentially
expressed
genes
(DEGs)
temporal
lobe
189
frontal
lobe,
including
CLU
GFAP.
Pathway
analysis
suggested
reactivation
developmental
processes
adult
AD
brain.
Limited
data
availability
constrained
These
findings
underscore
need
rigorous
methods
transcriptomic
research
better
identify
changes
advance
biomarker
therapeutic
development.
This
review
is
registered
PROSPERO
(CRD42023466522).
Comprehensive
review:
Conducted
first
non-demented
using
primary
Identified
AD,
revealing
potential
targets.
discovery:
Highlighted
key
overlapping
pathways
such
as
"tube
morphogenesis"
"neuroactive
ligand-receptor
interaction"
that
may
play
critical
roles
AD.
Emphasized
importance
methodological
rigor
tools
guide
future
Acknowledged
access
complete
tables
lack
diversity
existing
datasets,
which
some
analysis.
Annals of Neurology,
Journal Year:
2021,
Volume and Issue:
90(3), P. 366 - 376
Published: May 26, 2021
Polygenic
risk
scores
(PRSs)
assess
the
individual
genetic
propensity
to
a
condition
by
combining
sparse
information
scattered
across
loci,
often
displaying
small
effect
sizes.
Most
PRSs
are
constructed
in
European-ancestry
populations,
limiting
their
use
other
ethnicities.
Here
we
and
validated
PRS
for
late-onset
Alzheimer's
Disease
(LOAD)
Caribbean
Hispanics
(CH).