bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Dec. 15, 2022
Abstract
Work
in
humans
and
animals
shows
that
the
brain
can
be
decomposed
into
large-scale
functional
networks.
Whereas
most
studies,
especially
humans,
use
blood-oxygenation-level-dependent
(BOLD)
signal,
relationship
between
BOLD
neuronal
activity
is
complex
incompletely
understood.
This
limits
our
ability
to
interpret
apply
measures
derived
from
fMRI-BOLD.
Here,
we
employ
wide-field
Ca
2+
imaging
simultaneously
recorded
with
fMRI-BOLD
highly-sampled
mice
expressing
GCaMP6f
excitatory
neurons.
These
unique
data
enabled
us
characterize
similarities
differences
networks
discoverable
by
each
modality.
Importantly,
applied
a
network
partitioning
approach
uses
mixed-membership
algorithm,
which
allows
regions
participate
multiple
varying
strengths.
contrasts
assuming
belong
only
one
network.
Our
findings
demonstrate
(1)
are
detected
via
signals.
(2)
There
considerable
overlapping—as
opposed
disjoint—network
organization
evident
both
modalities.
(3)
Large-scale
determined
signals
at
low
temporal
frequencies
(0.01
–
0.5
Hz
)—as
higher
(0.5
5
)—are
more
similar
those
BOLD.
(4)
Despite
many
similarities,
emerge
across
modes
including
spatial
distribution
of
membership
diversity
(the
extent
affiliate
networks).
In
sum,
neurons
confirms
mouse
cortex
functionally
organized
overlapping
manner
reflects
many,
but
not
all,
properties
observable
simultaneous
fMRI-BOLD;
affirming
neural
origins
patterns
clinically
accessible
neuroimaging
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Dec. 16, 2023
Abstract
Amyloid
accumulation
in
Alzheimer’s
disease
(AD)
is
associated
with
synaptic
damage
and
altered
connectivity
brain
networks.
While
measures
of
amyloid
biochemical
changes
mouse
models
have
utility
for
translational
studies
certain
therapeutics,
preclinical
analysis
using
clinically
relevant
fMRI
has
not
been
well
developed
agents
intended
to
improve
neural
Here,
we
conduct
a
longitudinal
study
double
knock-in
model
AD
(
App
NL-G-F
/hMapt
),
monitoring
by
means
resting-state
fMRI.
the
4-month-old
mice
are
indistinguishable
from
wild-type
controls
(WT),
decreased
default-mode
network
significant
relative
WT
6
months
age
pronounced
9
age.
In
second
cohort
20-month-old
persistent
functional
deficits
WT,
assess
impact
two-months
oral
treatment
silent
allosteric
modulator
mGluR5
(BMS-984923)
known
rescue
density.
Functional
aged
reversed
mGluR5-directed
treatment.
The
application
enabled
us
define
time
trajectory
AD-related
connectivity,
demonstrate
translatable
metric
emergence,
progression,
response
synapse-rescuing
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 27, 2024
Repeated
mild
head
injuries
due
to
sports,
or
domestic
violence
and
military
service
are
increasingly
linked
debilitating
symptoms
in
the
long
term.
Although
may
take
decades
manifest,
potentially
treatable
neurobiological
alterations
must
begin
shortly
after
injury.
Better
means
diagnose
treat
traumatic
brain
injuries,
requires
an
improved
understanding
of
mechanisms
underlying
progression
through
which
they
can
be
measured.
Here,
we
employ
a
repetitive
closed-head
injury
(rmTBI)
chronic
variable
stress
(CVS)
mouse
model
investigate
emergent
structural
functional
abnormalities.
Brain
imaging
is
achieved
with
[
SAGE Open,
Journal Year:
2024,
Volume and Issue:
14(3)
Published: July 1, 2024
Open
science
movement
gains
attention
since
it
might
enable
a
second
scientific
revolution
that
fundamentally
changes
research
methods
and
standards
across
science.
However,
the
discussion
topics
towards
opens
both
from
academia
environments
outside
scholarly
communication
process
have
not
been
formally
identified.
This
paper
contributes
to
end
by
analyzing
145,716
open-science-related
tweets
3,200
papers
in
Scopus
2011
2022.
The
results
show
there
is
increasing
interest
about
open
on
Twitter
academia.
There
are
similar
foci
for
public
Scopus,
including
cloud
computing
COVID-19
pandemic.
When
focus
events
citizen
science,
more
concerned
detailed
aspects
novel
innovation
research.
findings
policy-maker
offering
evidence
facilitate
policies
practices.
Abstract
Probabilistic
graphical
models
have
become
an
important
unsupervised
learning
tool
for
detecting
network
structures
a
variety
of
problems,
including
the
estimation
functional
neuronal
connectivity
from
two‐photon
calcium
imaging
data.
However,
in
context
imaging,
technological
limitations
only
allow
partially
overlapping
layers
neurons
brain
region
interest
to
be
jointly
recorded.
In
this
case,
graph
full
data
requires
inference
edge
selection
when
many
pairs
no
simultaneous
observations.
This
leads
quilting
problem,
which
seeks
estimate
presence
block‐missingness
empirical
covariance
matrix.
Solutions
problem
previously
been
studied
Gaussian
models;
however,
neural
activity
are
often
non‐Gaussian,
thereby
requiring
more
flexible
modelling
approach.
Thus,
our
work,
we
study
two
approaches
nonparanormal
based
on
copula
model,
namely,
maximum
likelihood
procedure
and
low
rank‐based
framework.
We
provide
theoretical
guarantees
recovery
former
approach
under
similar
conditions
those
developed
setting,
investigate
performance
both
methods
using
simulations
as
well
real
Our
yield
scientifically
meaningful
estimates
compared
existing
set.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Dec. 15, 2022
Abstract
Work
in
humans
and
animals
shows
that
the
brain
can
be
decomposed
into
large-scale
functional
networks.
Whereas
most
studies,
especially
humans,
use
blood-oxygenation-level-dependent
(BOLD)
signal,
relationship
between
BOLD
neuronal
activity
is
complex
incompletely
understood.
This
limits
our
ability
to
interpret
apply
measures
derived
from
fMRI-BOLD.
Here,
we
employ
wide-field
Ca
2+
imaging
simultaneously
recorded
with
fMRI-BOLD
highly-sampled
mice
expressing
GCaMP6f
excitatory
neurons.
These
unique
data
enabled
us
characterize
similarities
differences
networks
discoverable
by
each
modality.
Importantly,
applied
a
network
partitioning
approach
uses
mixed-membership
algorithm,
which
allows
regions
participate
multiple
varying
strengths.
contrasts
assuming
belong
only
one
network.
Our
findings
demonstrate
(1)
are
detected
via
signals.
(2)
There
considerable
overlapping—as
opposed
disjoint—network
organization
evident
both
modalities.
(3)
Large-scale
determined
signals
at
low
temporal
frequencies
(0.01
–
0.5
Hz
)—as
higher
(0.5
5
)—are
more
similar
those
BOLD.
(4)
Despite
many
similarities,
emerge
across
modes
including
spatial
distribution
of
membership
diversity
(the
extent
affiliate
networks).
In
sum,
neurons
confirms
mouse
cortex
functionally
organized
overlapping
manner
reflects
many,
but
not
all,
properties
observable
simultaneous
fMRI-BOLD;
affirming
neural
origins
patterns
clinically
accessible
neuroimaging