The multiverse of data preprocessing and analysis in graph-based fMRI: A systematic literature review of analytical choices fed into a decision support tool for informed analysis
Neuroscience & Biobehavioral Reviews,
Journal Year:
2024,
Volume and Issue:
165, P. 105846 - 105846
Published: Aug. 6, 2024
The
large
number
of
different
analytical
choices
used
by
researchers
is
partly
responsible
for
the
challenge
replication
in
neuroimaging
studies.
For
an
exhaustive
robustness
analysis,
knowledge
full
space
options
essential.
We
conducted
a
systematic
literature
review
to
identify
decisions
functional
data
preprocessing
and
analysis
emerging
field
cognitive
network
neuroscience.
found
61
steps,
with
17
them
having
debatable
parameter
choices.
Scrubbing,
global
signal
regression,
spatial
smoothing
are
among
controversial
steps.
There
no
standardized
order
which
steps
applied,
settings
within
several
vary
widely
across
By
aggregating
pipelines
studies,
we
propose
three
taxonomic
levels
categorize
choices:
1)
inclusion
or
exclusion
specific
2)
tuning
3)
distinct
sequencing
have
developed
decision
support
application
high
educational
value
called
METEOR
facilitate
access
design
well-informed
(multiverse)
analysis.
Language: Английский
The multiverse of data preprocessing and analysis in graph-based fMRI: A systematic literature review of analytical choices fed into a decision support tool for informed analysis
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 15, 2024
Abstract
The
large
number
of
different
analytical
choices
researchers
use
may
be
partly
responsible
for
the
replication
challenge
in
neuroimaging
studies.
For
robustness
analysis,
knowledge
full
space
options
is
essential.
We
conducted
a
systematic
literature
review
to
identify
decisions
functional
data
preprocessing
and
analysis
emerging
field
cognitive
network
neuroscience.
found
61
steps,
with
17
them
having
debatable
options.
Scrubbing,
global
signal
regression,
spatial
smoothing
are
among
controversial
steps.
There
no
standardized
order
which
steps
applied,
within
several
vary
widely
across
By
aggregating
pipelines
studies,
we
propose
three
taxonomic
levels
categorize
choices:
1)
inclusion
or
exclusion
specific
2)
distinct
sequencing
3)
parameter
tuning
To
facilitate
access
data,
developed
decision
support
app
high
educational
value
called
METEOR,
allows
explore
as
reference
well-informed
(multiverse)
analysis.
Highlights
Data
variability
hinders
replicability.
Analysis
multiple
defensible
examines
results.
identified
102
performing
graph-fMRI
Interactive
visualization
these
available
Shiny
app.
Language: Английский
An Extended Active Learning Approach to Multiverse Analysis: Predictions of Latent Variables from Graph Theory Measures of the Human Connectome and Their Direct Replication
Brainiacs Journal of Brain Imaging And Computing Sciences,
Journal Year:
2023,
Volume and Issue:
4(2)
Published: Dec. 23, 2023
Multiverse
analysis
has
been
proposed
as
a
powerful
technique
to
disclose
the
large
number
of
degrees
freedom
in
data
preprocessing
and
that
strongly
contribute
current
replication
crisis
science.However,
field
imaging
neuroscience,
where
multidimensional,
complex
noisy
are
measured,
multiverse
may
be
computationally
infeasible.The
possible
forking
paths
given
by
different
methodological
decisions
analytical
choices
is
immense.Recently,
Dafflon
et
al.
(2022)
an
active
learning
approach
alternative
exhaustively
exploring
all
paths.Here,
we
aimed
extend
their
pipeline
integrating
latent
underlying
variables
which
not
directly
observable.The
extension
outcomes
particularly
valuable
for
computational
psychiatry
neurocognitive
psychology,
traits
conceptualized
common
cause
variety
observable
neural
behavioral
symptoms.To
illustrate
our
test
its
direct
replicability,
analyzed
individual
organization
topology
functional
brain
networks
two
relatively
samples
from
ABCD
study
dataset
(N
=
1491)
HCP
833).Graph-theoretical
parameters
take
into
account
both
brain-wide
region-specific
network
properties
were
used
predictors
variable
reflecting
general
cognition.Our
results
demonstrate
ability
extended
method
selectively
explore
when
predicting
variable.First,
low-dimensional
space
created
with
was
able
cluster
according
similarity.Second,
successfully
estimated
prediction
performance
pipelines
datasets.To
interactively
results,
developed
Shiny
app
visualize
predictive
accuracy
resulting
each
path
similarity
between
combinations
processing
choice.The
code
available
at
Github
repository
ExtendedAL.
Language: Английский
Unveiling the Core Functional Networks of Cognition: An Ontology-Guided Machine Learning Approach
NeuroImage,
Journal Year:
2024,
Volume and Issue:
298, P. 120804 - 120804
Published: Aug. 23, 2024
Deciphering
the
functional
architecture
that
underpins
diverse
cognitive
functions
is
fundamental
quest
in
neuroscience.
In
this
study,
we
employed
an
innovative
machine
learning
framework
integrated
ontology
with
connectivity
analysis
to
identify
brain
networks
essential
for
cognition.
We
identified
a
core
assembly
of
connectomes,
primarily
located
within
association
cortex,
which
showed
superior
predictive
performance
compared
two
conventional
methods
widely
previous
research
across
various
domains.
Our
approach
achieved
mean
prediction
accuracy
0.13
16
tasks,
including
working
memory,
reading
comprehension,
and
sustained
attention,
outperforming
traditional
methods'
0.08.
contrast,
our
method
limited
power
sensory,
motor,
emotional
functions,
0.03
9
relevant
slightly
lower
than
0.04.
These
connectomes
were
further
characterized
by
distinctive
patterns
resting-state
connectivity,
structural
via
white
matter
tracts,
gene
expression,
highlighting
their
neurogenetic
underpinnings.
findings
reveal
domain-general
network
fingerprint
pivotal
cognition,
offering
novel
computational
explore
neural
foundations
abilities.
Language: Английский
A Field Theory of Human Intelligence
Alan Griswold
No information about this author
Published: Oct. 22, 2023
The
standard
model
of
human
intelligence
is
a
brain-centric
and
brain-specific
depiction
intelligence,
it
enjoys
nearly
universal
acceptance
within
the
research
community.
Nonetheless,
does
face
some
serious
challenges,
including
lack
specificity
an
inability
to
account
for
Flynn
effect
(other
than
assume
that
must
be
temporary
aberration).
What
being
presented
here
alternative
one
locates
not
brain
but
instead
growing
amount
artificial
structure
contained
environment.
Although
this
field
theory
approach
runs
counter
widely
accepted
model,
offer
several
advantages.
One,
eschews
any
extraordinary
biological
or
evolutionary
assumptions
regarding
functioning
brain.
Two,
provides
specific
observable
description
material
intelligence.
And
three,
gives
straightforward
elegant
explanation
effect.
For
these
reasons,
merits
consideration.
Language: Английский