bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: May 12, 2023
Abstract
Understanding
the
variability
of
environment
is
essential
to
function
in
everyday
life.
The
brain
must
hence
take
uncertainty
into
account
when
updating
its
internal
model
world.
basis
for
are
prediction
errors
that
arise
from
a
difference
between
current
and
new
sensory
experiences.
Although
error
neurons
have
been
identified
layer
2/3
diverse
areas,
how
modulates
these
learning
is,
however,
unclear.
Here,
we
use
normative
approach
derive
should
modulate
postulate
represent
uncertainty-modulated
(UPE).
We
further
hypothesise
circuit
calculates
UPE
through
subtractive
divisive
inhibition
by
different
inhibitory
cell
types.
By
implementing
calculation
UPEs
microcircuit
model,
show
types
can
compute
means
variances
stimulus
distribution.
With
local
activity-dependent
plasticity
rules,
computations
be
learned
context-dependently,
allow
upcoming
stimuli
their
Finally,
mechanism
enables
an
organism
optimise
strategy
via
adaptive
rates.
Nature,
Journal Year:
2024,
Volume and Issue:
633(8029), P. 398 - 406
Published: Aug. 28, 2024
Abstract
The
brain
functions
as
a
prediction
machine,
utilizing
an
internal
model
of
the
world
to
anticipate
sensations
and
outcomes
our
actions.
Discrepancies
between
expected
actual
events,
referred
errors,
are
leveraged
update
guide
attention
towards
unexpected
events
1–10
.
Despite
importance
prediction-error
signals
for
various
neural
computations
across
brain,
surprisingly
little
is
known
about
circuit
mechanisms
responsible
their
implementation.
Here
we
describe
thalamocortical
disinhibitory
that
required
generating
sensory
in
mouse
primary
visual
cortex
(V1).
We
show
violating
animals’
predictions
by
stimulus
preferentially
boosts
responses
layer
2/3
V1
neurons
most
selective
stimulus.
Prediction
errors
specifically
amplify
input,
rather
than
representing
non-specific
surprise
or
difference
how
input
deviates
from
animal’s
predictions.
This
amplification
implemented
cooperative
mechanism
requiring
thalamic
pulvinar
cortical
vasoactive-intestinal-peptide-expressing
(VIP)
inhibitory
interneurons.
In
response
VIP
inhibit
specific
subpopulation
somatostatin-expressing
interneurons
gate
excitatory
V1,
resulting
pulvinar-driven
stimulus-selective
V1.
Therefore,
prioritizes
unpredicted
information
selectively
increasing
salience
features
through
synergistic
interaction
neocortical
circuits.
Nature,
Journal Year:
2025,
Volume and Issue:
640(8058), P. 459 - 469
Published: April 9, 2025
Abstract
Understanding
the
relationship
between
circuit
connectivity
and
function
is
crucial
for
uncovering
how
brain
computes.
In
mouse
primary
visual
cortex,
excitatory
neurons
with
similar
response
properties
are
more
likely
to
be
synaptically
connected
1–8
;
however,
broader
rules
remain
unknown.
Here
we
leverage
millimetre-scale
MICrONS
dataset
analyse
synaptic
functional
of
across
cortical
layers
areas.
Our
results
reveal
that
preferentially
within
areas—including
feedback
connections—supporting
universality
‘like-to-like’
hierarchy.
Using
a
validated
digital
twin
model,
separated
neuronal
tuning
into
feature
(what
respond
to)
spatial
(receptive
field
location)
components.
We
found
only
component
predicts
fine-scale
connections
beyond
what
could
explained
by
proximity
axons
dendrites.
also
discovered
higher-order
rule
whereby
postsynaptic
neuron
cohorts
downstream
presynaptic
cells
show
greater
similarity
than
predicted
pairwise
like-to-like
rule.
Recurrent
neural
networks
trained
on
simple
classification
task
develop
patterns
mirror
both
rules,
magnitudes
those
in
data.
Ablation
studies
these
recurrent
disrupting
impairs
performance
random
connections.
These
findings
suggest
principles
may
have
role
sensory
processing
learning,
highlighting
shared
biological
artificial
systems.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: March 14, 2023
Understanding
the
relationship
between
circuit
connectivity
and
function
is
crucial
for
uncovering
how
brain
implements
computation.
In
mouse
primary
visual
cortex
(V1),
excitatory
neurons
with
similar
response
properties
are
more
likely
to
be
synaptically
connected,
but
previous
studies
have
been
limited
within
V1,
leaving
much
unknown
about
broader
rules.
this
study,
we
leverage
millimeter-scale
MICrONS
dataset
analyze
synaptic
functional
of
individual
across
cortical
layers
areas.
Our
results
reveal
that
responses
preferentially
connected
both
areas
—
including
feedback
connections
suggesting
universality
‘like-to-like’
hierarchy.
Using
a
validated
digital
twin
model,
separated
neuronal
tuning
into
feature
(what
respond
to)
spatial
(receptive
field
location)
components.
We
found
only
component
predicts
fine-scale
connections,
beyond
what
could
explained
by
physical
proximity
axons
dendrites.
also
higher-order
rule
where
postsynaptic
neuron
cohorts
downstream
presynaptic
cells
show
greater
similarity
than
predicted
pairwise
like-to-like
rule.
Notably,
recurrent
neural
networks
(RNNs)
trained
on
simple
classification
task
develop
patterns
mirroring
rules,
magnitude
those
in
data.
Lesion
these
RNNs
disrupting
has
significantly
impact
performance
compared
lesions
random
connections.
These
findings
suggest
principles
may
play
role
sensory
processing
learning,
highlighting
shared
biological
artificial
systems.
Proceedings of the National Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
121(25)
Published: June 13, 2024
Cortical
networks
exhibit
complex
stimulus–response
patterns
that
are
based
on
specific
recurrent
interactions
between
neurons.
For
example,
the
balance
excitatory
and
inhibitory
currents
has
been
identified
as
a
central
component
of
cortical
computations.
However,
it
remains
unclear
how
required
synaptic
connectivity
can
emerge
in
developing
circuits
where
synapses
neurons
simultaneously
plastic.
Using
theory
modeling,
we
propose
wide
range
response
properties
arise
from
single
plasticity
paradigm
acts
at
all
connections—Hebbian
learning
is
stabilized
by
synapse-type-specific
competition
for
limited
supply
resources.
In
plastic
circuits,
this
enables
formation
decorrelation
inhibition-balanced
receptive
fields.
Networks
develop
an
assembly
structure
with
stronger
connections
similarly
tuned
normalization
orientation-specific
center-surround
suppression,
reflecting
stimulus
statistics
during
training.
These
results
demonstrate
self-organize
into
functional
suggest
essential
role
competitive
development
circuits.
Cerebral Cortex,
Journal Year:
2024,
Volume and Issue:
34(10)
Published: Oct. 1, 2024
Abstract
Although
the
structure
of
cortical
networks
provides
necessary
substrate
for
their
neuronal
activity,
alone
does
not
suffice
to
understand
activity.
Leveraging
increasing
availability
human
data,
we
developed
a
multi-scale,
spiking
network
model
cortex
investigate
relationship
between
and
dynamics.
In
this
model,
each
area
in
one
hemisphere
Desikan–Killiany
parcellation
is
represented
by
$1\,\mathrm{mm^{2}}$
column
with
layered
structure.
The
aggregates
data
across
multiple
modalities,
including
electron
microscopy,
electrophysiology,
morphological
reconstructions,
diffusion
tensor
imaging,
into
coherent
framework.
It
predicts
activity
on
all
scales
from
single-neuron
area-level
functional
connectivity.
We
compared
electrophysiological
resting-state
magnetic
resonance
imaging
(fMRI)
data.
This
comparison
reveals
that
can
reproduce
aspects
both
statistics
fMRI
correlations
if
inter-areal
connections
are
sufficiently
strong.
Furthermore,
study
propagation
single-spike
perturbation
macroscopic
fluctuations
through
network.
open-source
serves
as
an
integrative
platform
further
refinements
future
silico
studies
structure,
dynamics,
function.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 30, 2024
Abstract
The
primate
brain
uses
billions
of
interacting
neurons
to
produce
macroscopic
dynamics
and
behavior,
but
current
methods
only
allow
neuroscientists
investigate
a
subset
the
neural
activity.
Computational
modeling
offers
an
alternative
testbed
for
scientific
hypotheses,
by
allowing
full
control
system.
Here,
we
test
hypothesis
that
local
cortical
circuits
are
organized
into
joint
clusters
excitatory
inhibitory
investigating
influence
this
organizational
principle
on
resting-state
spiking
activity,
inter-area
propagation,
variability
dynamics.
model
represents
all
vision-related
areas
in
one
hemisphere
macaque
cortex
with
biologically
realistic
neuron
densities
connectivities,
expanding
previous
unclustered
Each
area
is
represented
square
millimeter
microcircuit
including
density
synapses,
avoiding
downscaling
artifacts
testing
at
natural
scale.
We
find
excitatory-inhibitory
clustering
normalizes
activity
statistics
terms
firing
rate
distributions
inter-spike
interval
variability.
A
comparison
data
from
V1,
V4,
FEF,
7a,
DP
shows
enables
especially
higher
be
better
captured.
In
addition,
supports
signal
propagation
across
both
feedforward
feedback
directions
reasonable
latencies.
Finally,
also
show
localized
stimulation
clustered
quenches
agreement
experimental
observations.
conclude
likely
circuits,
supporting
statistics,
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 16, 2024
Abstract
Marmosets
and
macaques
are
common
non-human
primate
models
of
cognition,
but
evidence
suggests
that
marmosets
perform
more
poorly
appear
distractible
during
cognitive
tasks.
The
dorsolateral
prefrontal
cortex
(dlPFC)
plays
a
key
role
in
regulating
attention,
prior
research
dopaminergic
modulation
inhibitory
parvalbumin
(PV)
neurons
could
contribute
to
distractibility
performance.
Thus,
we
compared
the
two
species
using
visual
fixation
task
with
distractors,
performed
molecular
anatomical
analyses
dlPFC,
linked
functional
microcircuitry
performance
computational
modeling.
We
found
than
macaques,
marmoset
dlPFC
PV
contain
higher
levels
dopamine-1
receptor
(D1R)
transcripts,
similar
mice,
D1R
protein.
model
suggested
expression
may
increase
by
suppressing
microcircuits,
e.g.,
when
dopamine
is
released
salient
stimuli.
Proceedings of the National Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
121(28)
Published: July 3, 2024
Understanding
the
genesis
of
shared
trial-to-trial
variability
in
neuronal
population
activity
within
sensory
cortex
is
critical
to
uncovering
biological
basis
information
processing
brain.
Shared
often
a
reflection
structure
cortical
connectivity
since
it
likely
arises,
part,
from
local
circuit
inputs.
A
series
experiments
segregated
networks
(excitatory)
pyramidal
neurons
mouse
primary
visual
challenge
this
view.
Specifically,
across-network
correlations
were
found
be
larger
than
predicted
given
known
weak
cross-network
connectivity.
We
aim
uncover
mechanisms
responsible
for
these
enhanced
through
biologically
motivated
models.
Our
central
finding
that
coupling
each
excitatory
subpopulation
with
specific
inhibitory
provides
most
robust
network-intrinsic
solution
shaping
correlations.
This
result
argues
existence
excitatory–inhibitory
functional
assemblies
early
areas
which
mirror
not
just
response
properties
but
also
between
cells.
Furthermore,
our
findings
provide
theoretical
support
recent
experimental
observations
showing
inhibition
forms
structural
and
subnetworks
cells,
contrast
classical
view
nonspecific
blanket
suppression
excitation.