International Journal of Molecular Sciences,
Journal Year:
2023,
Volume and Issue:
24(16), P. 12954 - 12954
Published: Aug. 19, 2023
In
this
study,
the
chloroplast
genomes
and
transcriptomes
of
five
Deutzia
genus
species
were
sequenced,
characterized,
combined,
analyzed.
A
phylogenetic
tree
was
constructed,
including
32
other
genome
sequences
Hydrangeoideae
species.
The
results
showed
that
typical
circular
156,860-157,025
bp
in
length,
with
37.58-37.6%
GC
content.
Repeat
analysis
had
41-45
scattered
repeats
199-201
simple
sequence
repeats.
Comparative
genomic
pi
analyses
indicated
are
conservative
gene
structures
stable.
According
to
tree,
appear
be
closely
related
Kirengeshoma
palmata
Philadelphus.
By
combining
transcriptomic
analyses,
29-31
RNA
editing
events
163-194
orthologous
genes
identified.
ndh,
rpo,
rps,
atp
most
sites,
all
C-to-U
type.
Most
annotated
chloroplast,
mitochondria,
nucleus,
functions
energy
production
conversion,
translation,
protein
transport.
Genes
biosynthesis
monoterpenoids
flavonoids
also
identified
from
transcriptome
spp.
Our
will
contribute
further
studies
information
potential
uses
Research Square (Research Square),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Feb. 16, 2024
Abstract
Pakistan's
economy
greatly
benefits
from
citrus
production
since
these
fruits
are
sold
and
consumed
all
over
the
world.
Nevertheless,
there
difficulties
associated
with
cultivating
fruits,
such
as
illnesses
brought
on
by
bacteria,
viruses,
fungus.
The
quantity
quality
of
fruit
that
is
produced
might
be
negatively
impacted
challenges
well
obtaining
proper
nutrients.
One
tough
problem
canker,
which
caused
a
harmful
germ
called
Xanthomonas
axonopodis.
This
affects
many
types
study
looked
closely
at
how
canker
leaves
in
places
like
Sargodha,
Bhalwal,
Kotmomin,
Silanwali,
big
areas
for
growing
Sargodha
district.
What
we
found
was
plants
without
disease
had
more
chlorophyll
their
compared
to
sick
plants.
Also,
healthy
better
amounts
important
minerals
calcium,
magnesium,
potassium,
phosphorus
fruits.
But
too
much
sodium,
iron
levels
were
bit
different.
also
didn't
have
something
protects
them
antioxidants,
made
likely
get
sick.
helps
us
understand
fruit,
so
can
think
ways
deal
it.
Research Square (Research Square),
Journal Year:
2024,
Volume and Issue:
unknown
Published: March 1, 2024
Abstract
Australian
wild
limes
occur
in
highly
diverse
range
of
environments
and
are
a
unique
genetic
resource
within
the
genus
Citrus.
Here
we
compare
haplotype-resolved
genome
assemblies
six
native
limes,
including
four
new
generated
using
PacBio
HiFi
Hi-C
sequencing
data.
The
size
genomes
was
between
315
391
Mb
with
contig
N50s
from
29.5
to
35
Mb.
Gene
completeness
estimated
be
98.4–99.3%
annotations
97.7–98.9%
based
upon
BUSCO,
confirming
high
contiguity
assembled
genomes.
High
collinearity
observed
among
two
haplotype
for
each
species.
duplication
evolutionary
analysis
demonstrated
that
citrus
have
undergone
only
one
ancient
whole-genome
triplication
event
during
evolution.
highest
number
species-specific
expanded
gene
families
were
found
C.
glauca
they
primarily
enriched
purine,
thiamine
metabolism,
amino
acids
aromatic
metabolism
which
might
help
mitigate
drought,
salinity,
pathogen
attacks
drier
this
species
is
found.
Unique
genes
related
terpene
biosynthesis,
glutathione
toll-like
receptors
australasica,
starch
sucrose
both
australis
australasica
important
candidate
HLB
tolerance
these
Expanded
not
lineage
specific,
however,
greater
plant-pathogen
interactions,
predominantly
disease
resistant
protein,
australis.
