bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Aug. 2, 2023
Abstract
Aim
Species
distribution
models
(SDMs)
are
an
important
tool
for
predicting
species
occurrences
in
geographic
space
and
understanding
the
drivers
of
these
occurrences.
An
effect
environmental
variable
selection
on
SDM
outcomes
has
been
noted,
but
how
treatment
variables
influences
models,
including
model
performance
predicted
range
area,
remains
largely
unclear.
For
example,
although
landcover
included
SDMs
form
proportions,
or
relative
cover,
recent
findings
suggest
that
associated
with
uncommon
habitats
simple
presence
absence
a
feature
is
most
informative.
Here
we
investigate
generality
this
hypothesis
determine
which
representation
features
produces
best-performing
affects
area
estimates.
Finally,
document
modulated
by
spatial
grain
size,
known
to
influence
estimated
area.
Location
North
America
Methods
We
fit
(via
Random
Forest)
57
water
bird
using
proportional
binary
estimates
cover
grid
cell
occurrence
data
from
eBird
citizen
science
initiative.
evaluated
four
different
thresholds
prevalence
(land
representations)
within
(1%,
10%,
20%
50%)
across
both
breeding
non-breeding
seasons
multiple
sizes
(1,
5,
10,
50
km
lengths).
Results
Model
was
not
significantly
affected
type
land
representation.
However,
when
were
fitted
variables,
model-assessed
importance
bodies
decreased,
especially
at
coarse
sizes.
In
variable-case,
relied
more
other
over-or
under-predicted
5-30%.
some
cases,
differences
up
70%
ranges
observed.
Main
conclusions
summarizing
often
afterthought
modelling.
Inaccurate
areas
resulting
as
could
lead
prioritization
conservation
efforts
where
do
occur
cause
crucial
be
missed.
Importantly,
our
results
finer
sizes,
might
useful
accurately
measuring
distributions.
studies
relatively
recommend
fitting
variables.
Diversity and Distributions,
Journal Year:
2025,
Volume and Issue:
31(1)
Published: Jan. 1, 2025
ABSTRACT
Aim
Anthropogenic
threats
often
lead
to
range
contraction
towards
the
margins
of
a
species
historic
niche,
resulting
in
increased
extinction
risk.
Here,
we
investigate
niche
characteristics
current
and
populations
evaluate
changes
‘Area
Niche’
(AON)
following
loss
from
different
levels
anthropogenic
three
congeneric
Asian
gazelle
are
facing:
Przewalski's
(
Procapra
przewalskii
),
Tibetan
P.
picticaudata
)
Mongolian
gazelles
gutturosa
).
Location
Tibet,
Qinghai
Mongolia.
Methods
We
collated
maps
for
contemporary
distributions
Przewalski's,
created
3‐dimensional
hypervolume
convex
hull
models
using
environmental
variables
Worldclim
dataset
(v2)
together
with
topographic
information
SRTM
elevation
data
Area
Habitat
evaluated
over
time.
calculated
Niche
by
projecting
scaled
Mahalanobis
distance
centroid
each
grid
cell
onto
species'
range.
Finally,
how
protected
area
network
overlaps
characteristics.
Results
The
endangered
has
lost
almost
all
its
remaining
at
peripheries.
In
contrast,
near‐threatened
least‐concern
have
less
contracted
their
centre.
Protected
areas
were
biased
ecological
ranges,
which
can
result
sub‐optimal
conservation
strategies.
Main
Conclusions
This
study
uses
modelling
occupied
that
undergone
contraction.
highlight
most
affected
vulnerable
shift
These
also
mismatch
between
space.
advocate
strategies
should
include
dynamics
as
an
indicator
Ecology Letters,
Journal Year:
2025,
Volume and Issue:
28(2)
Published: Feb. 1, 2025
ABSTRACT
Ecological
and
evolutionary
questions
addressing
diversity‐environment
relationships
have
been
evaluated
almost
entirely
in
geographic
space,
yet
most
hypotheses
are
formulated
terms
of
environmental
conditions.
Recent
examples
evaluating
macroecological
patterns
directly
space
suggest
that
such
refocusing
provides
different
perspectives
on
the
mechanisms
driving
broad‐scale
diversity.
Yet,
we
lack
both
conceptual
frameworks
targeted
studies
to
fully
evaluate
potential
contribution
a
refocus.
Here,
focus
concept
by
briefly
reviewing
its
use
ecology
evolution
suggesting
avenues
for
further
development.
We
encourage
re‐evaluation
dominated
ecological
theory
since
foundations
with
very
simple
shift
lens,
is,
from
geographical
space.
Focusing
also
crucial
lens
climate
change
research,
enabling
comprehensive
evaluation
biodiversity
dynamics
offering
holistic
view
interplay
between
species
their
evolving
environments.
This
enhances
our
ability
predict
adapt
future
changes,
enriching
understanding
beyond
more
commonly
done
analyses.
Landscape Ecology,
Journal Year:
2024,
Volume and Issue:
39(3)
Published: March 4, 2024
Abstract
Context
Species
distribution
models
are
widely
used
in
ecology.
The
selection
of
environmental
variables
is
a
critical
step
SDMs,
nowadays
compounded
by
the
increasing
availability
data.
Objectives
To
evaluate
interaction
between
grain
size
and
binary
(presence
or
absence
water)
proportional
(proportion
water
within
cell)
representation
cover
variable
when
modeling
bird
species
distribution.
Methods
eBird
occurrence
data
with
an
average
number
records
880,270
per
across
North
American
continent
were
for
analysis.
Models
(via
Random
Forest)
fitted
57
species,
two
seasons
(breeding
vs.
non-breeding),
at
four
grains
(1
km
2
to
2500
)
using
as
variable.
Results
models’
performances
not
affected
type
adopted
(proportional
binary)
but
significant
decrease
was
observed
importance
form.
This
especially
pronounced
coarser
during
breeding
season.
Binary
useful
finer
sizes
(i.e.,
1
).
Conclusions
At
more
detailed
),
simple
presence
certain
land-cover
can
be
realistic
descriptor
occurrence.
particularly
advantageous
collecting
habitat
field
simply
recording
significantly
less
time-consuming
than
its
total
area.
For
grains,
we
recommend
variables.
Forest Ecology and Management,
Journal Year:
2024,
Volume and Issue:
563, P. 122008 - 122008
Published: May 25, 2024
The
characteristic
spatial
scale
at
which
species
respond
strongest
to
forest
structure
is
unclear
and
species-specific
depends
on
the
degree
of
landscape
heterogeneity.
Research
often
analyzes
a
pre-defined
when
constructing
distribution
models
relating
variables
with
occupancy
patterns.
This
limitation,
as
characteristics
shape
use
habitat
multiple
scales.
To
explore
drivers
this
relationship,
we
conducted
an
in-depth
investigation
into
how
scaling
biologically
relevant
scales
affects
grouse
in
boreal
forest.
We
used
4,790
observations
(broods
adults)
collected
over
39,303
stands
for
15
years
four
(capercaillie,
black
grouse,
hazel
willow
grouse)
obtained
from
comprehensive
Finnish
wildlife
triangle
census
data
Airborne
Laser
Scanning
satellite
originally
sampled
16
m
resolution.
fitted
Generalized
Additive
Mixed
Models
linking
presence/absence
stand
composition.
estimated
effects
predictor
aggregated
three
reflecting
landscape:
local
level
scale,
home
range
1
km
radius,
regional
5
radius.
Multi-grain
considering
forest-species
relationships
were
evaluate
whether
there
specific
best
predict
occupancy.
found
that
affected
predictive
capacity
selection
was
same
(i.e.,
scale)
among
species.
Different
exhibited
varying
optimal
prediction.
Forest
more
important
than
compositional
diversity
predicting
irrespective
scale.
A
limited
number
predictors
related
availability
multi-layered
vegetation
suitable
thickets
explained
patterns
all
different
In
conclusion,
modeling
using
can
inform
managers
about
perceive
landscape.
evidence
calls
integrated
multiscale
approach
modelling
Ecography,
Journal Year:
2024,
Volume and Issue:
2024(5)
Published: March 22, 2024
Species
distribution
models
(SDMs)
are
extensively
used
to
estimate
species–environment
relationships
(SERs)
and
predict
species
across
space
time.
For
this
purpose,
it
is
key
choose
relevant
spatial
grains
for
predictor
response
variables
at
the
onset
of
modelling
process.
However,
environmental
often
derived
from
large‐scale
climate
a
grain
that
can
be
coarser
than
one
variable.
Such
area‐to‐point
misalignment
bias
estimates
SER
jeopardise
robustness
predictions.
We
virtual
approach,
running
simulations
different
levels
seek
statistical
solutions
problem.
specifically
compared
accuracy
predictive
performances,
assessed
degrees
heterogeneity
in
conditions,
three
SDMs:
GLM,
GLM
Berkson
error
model
(BEM)
accounts
fine‐grain
within
coarse‐grain
cells.
Only
BEM
accurately
relatively
data
(up
50
times
grain),
while
two
GLMs
provide
flattened
SER.
all
perform
poorly
when
predicting
data,
particularly
environments
more
heterogeneous
training
conditions.
Conversely,
decreasing
relative
dataset
reduces
biases.
Because
predictions
made
covariate‐grain
displays
lower
performance
GLMs.
Thus,
standard
selection
methods
would
fail
select
best
SERs
(here,
BEM),
which
could
lead
false
interpretations
about
drivers
distributions.
Overall,
we
conclude
BEM,
because
robustly
grain,
holds
great
promise
overcome
misalignment.
Global Ecology and Biogeography,
Journal Year:
2025,
Volume and Issue:
34(2)
Published: Jan. 30, 2025
ABSTRACT
Aim
The
build‐up
of
local
species
diversity
requires
completing
the
transition
from
allopatry
to
sympatry
coexistence
(syntopy).
However,
understanding
processes
than
enable
arising
in
become
syntopic
remains
an
unsolved
challenge.
Potential
explanations
include
niche
conservatism,
divergence,
and
energy
availability.
To
gauge
their
importance,
we
modelled
effects
split
age,
divergence
beta
alpha
niches,
specialisation,
resource
availability
reveal
factors
driving
evolution
upon
speciation.
Location
Global.
Time
Period
Miocene
present.
Major
Taxa
Studied
Passerine
birds.
Methods
We
collated
a
dataset
206
passerine
sister
pairs,
each
with
age
divergence;
range
sympatry;
degree
syntopy
(derived
7,257,312
complete
eBird
checklists
falling
within
area
overlap);
(habitats
environmental
characteristics);
(morphology,
diet,
foraging
stratum);
ecological
specialisation
(diet
availability;
body
mass.
used
phylogeny‐informed
models
infer
which
these
best
explained
Results
There
was
major
effect
conservatism
as
more
similar
niches
(canopy
height,
vegetation
greenness,
moisture
availability,
habitat
affinities)
exhibited
higher
syntopy.
Small
similarly
sized
beaks
high
on
diet
were
also
likely
coexist
locally.
In
contrast,
or
overlap
stratum)
did
not
predict
Confirming
previous
studies,
strongly
increased
increasing
sympatry,
while
only
weakly
older
pairs.
Main
Conclusions
secondary
is
driven
by
mass‐related
requirements.
Consequently,
accumulation
richness
facilitated
both
differentiation
along
various
dimensions.
Ecology and Evolution,
Journal Year:
2025,
Volume and Issue:
15(2)
Published: Feb. 1, 2025
ABSTRACT
The
destruction
and
degradation
of
natural
ecosystems
is
a
major
driver
biodiversity
loss.
steppe
ecosystem
under
threat
from
human
activities
habitat
degradation.
Fine‐scale
breeding
selection
critical
for
the
survival
birds,
but
understanding
factors
that
drive
this
remains
challenging.
This
study
uses
field
point‐count
surveys
to
examine
influencing
quantify
niche
overlap
between
two
closely
related
bird
species:
Jankowski's
Bunting
(
Emberiza
jankowskii
)
Meadow
E.
cioides
in
Inner
Mongolia,
China.
These
species
share
similar
ecological
traits
overlapping
habitats,
making
them
ideal
exploring
how
fine‐scale
resource
differentiation
enable
coexistence
despite
similarity.
We
use
generalized
linear
models
(GLMs)
modeling
algorithms
analyze
data.
results
reveal
distinct
preferences
at
both
local
landscape
scales.
favors
areas
with
higher
vegetation
cover
height,
while
prefers
sites
greater
edge
density.
GLM
show
non‐linear
responses
variables,
thresholds
optimal
occurrence.
Niche
analysis
indicates
considerable
(Schoener's
D
=
0.57),
significant
differences
centroids
suggest
species.
Our
findings
emphasize
importance
considering
characteristics
–habitat
relationships
conservation
planning
birds.
Understanding
these
respond
changes
resulting
anthropogenic
activities—such
as
land‐use
conversion
agricultural
intensification—can
help
tailor
efforts
mitigate
negative
impacts
promote
sensitive
habitats.