Aerobic composting with sauerkraut fermentation waste water: Increasing the stability and complexity of bacterial community and changing bacterial community assembly processes

Bioresource Technology, Journal Year: 2023, Volume and Issue: 376, P. 128883 - 128883

Published: March 14, 2023

Language: Английский

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More Robust Co-Occurrence Patterns and Stronger Dispersal Limitations of Bacterial Communities in Wet than Dry Seasons of Riparian Wetlands

mSystems, Journal Year: 2023, Volume and Issue: 8(2)

Published: March 23, 2023

Riparian wetlands can be used as "sentinels" of environmental changes and play pivotal roles in ecological biogeochemical processes. The bacterial community is an essential rapidly responding component riparian areas. However, the co-occurrence patterns phylogenetic group-based processes during wet-dry periods are still open questions. Here, we compared assembly mechanisms soil communities typical across wet dry seasons, which subjected to intensive agricultural activities. results showed that potential functions, composition, network structure, were distinct between seasons. stability complexity season significantly higher than those network. Moreover, null model analysis homogeneous selection (HoS), dispersal limitation (DL), drift (DR) most important for assemblages, with a proportion DL (36.7%) (25.5%) but lower contributions HoS (36.1% versus 41.3%) DR (20.8% 25.4%). dominated by Flavobacteriales, Burkholderiales, Sphingomonadales controlled more limitation, whereas they negatively correlated precipitation, dissolved organic carbon, total carbon season, respectively. These findings expand our understanding vulnerability fragile anthropologically affected wetland ecosystems. IMPORTANCE comprise microbial easily surrounding conditions, especially landscapes wide range ecosystem services. After comparing microbiota, found exhibited stronger limitations season; however, bacteria bacteria. mainly shaped divergence temperature precipitation Revealing variations co-occurrence, seasons critical maintenance diversity regard sceneries.

Language: Английский

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Distinct strategies of the habitat generalists and specialists in the Arctic sediments: Assembly processes, co-occurrence patterns, and environmental implications

Marine Pollution Bulletin, Journal Year: 2024, Volume and Issue: 205, P. 116603 - 116603

Published: June 16, 2024

Language: Английский

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Assembly mechanism and stability of zooplankton communities affected by China's south-to-north water diversion project

Journal of Environmental Management, Journal Year: 2024, Volume and Issue: 365, P. 121497 - 121497

Published: June 18, 2024

Language: Английский

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Bacterial abundant taxa exhibit stronger environmental adaption than rare taxa in the Arctic Ocean sediments

Marine Environmental Research, Journal Year: 2024, Volume and Issue: 199, P. 106624 - 106624

Published: June 26, 2024

Language: Английский

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Spatiotemporal variations, assembly processes, and co-occurrence patterns of particle-attached and free-living bacteria in a large drinking water reservoir in China

Frontiers in Microbiology, Journal Year: 2023, Volume and Issue: 13

Published: Jan. 19, 2023

Particle-attached (PA) and free-living (FL) bacterial communities are sensitive to pollutant concentrations play an essential role in biogeochemical processes water quality maintenance aquatic ecosystems. However, the spatiotemporal variations, assembly processes, co-occurrence patterns, environmental interactions of PA FL bacteria drinking reservoirs remain as yet unexplored. To bridge this gap, we collected samples from 10 sites across four seasons Lake Tianmu, a large reservoir China. Analysis 16S rRNA gene libraries demonstrated variations diversity identified differences community composition (BCC) between lifestyles. Capacity for nitrogen respiration, fixation, nitrate denitrification was enriched lifestyle, while photosynthesis, methylotrophy, methanol oxidation were lifestyle. Deterministic including interspecies filtration, dominated both communities. The influence filtration on stronger than that community, indicating lifestyle more variation. Co-occurrence patterns keystone taxa differed ecological functions associated with supply recycling nutrients, those degradation complex pollutants. stable face changing conditions. Nutrients (e.g., TDN NO3-) abiotic biotic factors WT Chl-a) exerted positive negative effects, respectively, networks These results improve our understanding within reservoir.

Language: Английский

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Research progress on the content and distribution of rare earth elements in rivers and lakes in China

Marine Pollution Bulletin, Journal Year: 2023, Volume and Issue: 191, P. 114916 - 114916

Published: April 13, 2023

Language: Английский

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Rare resistome rather than core resistome exhibited higher diversity and risk along the Yangtze River

Water Research, Journal Year: 2023, Volume and Issue: 249, P. 120911 - 120911

Published: Nov. 23, 2023

Language: Английский

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Hydrological disturbances enhance stochastic assembly processes and decrease network stability of algae communities in a highland floodplain system

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 903, P. 166207 - 166207

Published: Aug. 9, 2023

Language: Английский

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Differentiation strategies for planktonic bacteria and eukaryotes in response to aggravated algal blooms in urban lakes

iMeta, Journal Year: 2023, Volume and Issue: 2(1)

Published: Jan. 31, 2023

Aggravated algal blooms potentially decreased environmental heterogeneity. Different strategies of planktonic bacteria and eukaryotes in response to aggravated blooms. Environmental constraints plankton showed different patterns over time. Protecting ecological health waterbodies for drinking, agricultural, industrial utilization caters one the current global sustainable development goals (SDG, https://sdgs.un.org/goals) [1]. Many measures (e.g., dredging) have been taken promise good waterbody quality by depleting nutrients phosphorus nitrogen) availability [2–4]. However, blooms, especially harmful cyanobacterial caused mainly eutrophication, occur seasonally periodically inland coastal aquatic ecosystems despite strict control external nutrient loading [5, 6]. Previous studies reported that example, Microcystis threaten diversity releasing secondary metabolites toxins) consuming oxygen 7]. Therefore, it is great importance disentangle how respond factors controlling water trophic state. Typically, key parameters chlorophyll-α [Chl-α] plus total phosphorus, nitrogen, and/or chemical demand) are used reflect predict level [8]. Nutritional nitrogen phosphorus) nonnutritional temperature turbidity) influence Chl-α content [9, 10]. For reducing can mitigate density a hyper-eutrophic lake [9]. Microorganisms mediate transformation waters sediments, particular absence [11, 12]. Bacteria cyanobacteria actinobacteria) phytoplankton, zooplankton, protozoa) important components food webs [13], interaction affects biomass Chl-α-containing [14, 15]. actinomycete display algicidal effect on Alexandrium tamarense [14], flagellates degrade toxic sp. producing functional compounds peroxiredoxin phosphatase) [15]. deciphering state essential investigate relying organisms prokaryotic eukaryotic algae) Planktonic drives multinutrient cycles [16]. whether could affect poorly understood during Most prefer community composition environments [17–19]. remains largely unknown about mechanisms underlying maintenance attempts made simultaneously estimate prokaryotes assessing species presence–absence abundance, assembly processes, coexistence [20–23]. In community, abundance be interpreted replacement difference [20]. Ecological processes include determinism sorting) stochasticity, with former imposed abiotic biotic later induced random events birth, death, drift) [24, 25]. Both heterogeneity adjust balance between stochasticity [25, 26]. instance, salinity major determinant shaping assemblies bacterioplankton Yellow River Estuary [26] microeukaryotes urban reservoirs [21]. determines (i.e., homogeneous selection heterogeneous selection) thus governs turnover Paraná [25]. Coexistence patterns, reflected co-occurrence network, infer interactions [27, 28]. According networks, identified as mutualistic or antagonistic based positive negative interactions, well hub balancing stability many rivers, lakes, reservoirs) [17, 21, 25, 26, 29], but insufficiently studied lakes suffering from massive this study, we chose 12 representative located Wuhan City (Supporting Information Table S1 Figure S1) collected samples April, May, June follow bloom development. criterion defining threshold 40 μg/L [30], these were > May April [83.29 ± 67.11 μg/L]; Supporting Information: S2). Here, aim (i) explore distribution differences, (ii) elucidate affecting Considering physicochemical properties change 22, 31], hypothesized both differ among sampling months. Because living styles [13, 16], would opposite constraint We measured conducted Illumina MiSeq sequencing bacterial communities address our research objectives verify hypothesis. found responses Water varied month S2), showing significant differences nitrate demand, calcium, magnesium, iron, electrical conductivity, pH, temperature, dissolved (p < 0.05). No turbidity, soluble reactive ammonia 3 months The (2.21–564.27 μg/L) notably increased June, more than 60% displayed three 66.7%; 70.4%; 77.8%). There increases index (TLI) (37.11–81.55; mesotrophic-hypereutrophic) (40.35–100.16; 0.05; Only turbidity was significantly correlated TLI all 0.05 p 0.01 0.001; higher June) S3). These results indicate there Absolute abundances S4), differently (r = 0.518, 0.01), 0.506, 0.567, 0.01). compositions exhibited distinct S5). A 10,511 amplicon sequence variants (ASVs) 4487 ASVs months, they shared 2080 783 ASVs, respectively. Bacterial dominated Proteobacteria (37.22%–59.82%), Actinobacteria (18.78%–33.85%), Bacteroidetes (5.65%–12.86%), Firmicutes (1.51%–5.45%), Deinococcus-Thermus (0.32%–3.86%), Cyanobacteria (3.08%–14.70%), Verrucomicrobia (0.56%–1.25%) relative positively S4). contrast, Chlorophyta (7.69%–20.42%), Rotifera (11.43%–13.30%), Arthropoda (8.59%–14.02%), Chytridiomycota (0.44%–5.16%), Dinophyceae (2.50%–6.02%), Chrysophyceae (0.71%–5.63%), Bacillariophyta (1.48%–7.64%), Streptophyta (0.32%–1.21%). Relative June. rather other Nonmetric multidimensional scaling (NMDS) plots (pairwise analyses similarity [ANOSIM], R 0.563, 0.001) (ANOSIM, 0.160, Significant distance-decay relationships (DDRs) 0.001), most fitness values relatively low at taxonomic phylogenetic levels (R2 0.1) S6), indicating weak decay geographical distance. β-diversities revealed S6). Except explained compositional variation redundancy analysis (RDA) S7). Based permutational multivariate variance (PERMANOVA) results, effects S8). shifts time, roles eukaryotes. By disassembling β-diversity (Figure 1), comparable dissimilarity richness difference. ratio (Repl/D) (mean Repl/D: 0.9724; 0.9684; 0.9666) 0.9318; 0.9379; 0.9771) S9). trend Unexpectedly, α-diversity represented Shannon–Wiener lower This result suggests increase along Mantel correlograms consistently noticeable correlations across short distances gradients S10). also intermediate distance covers signal 10% 40% maximum within each tree. signals Subsequently, evaluated time 2). Dispersal limitation (31.34%–66.95%), variable (10.26%–58.12%), "undominated" (3.42%–40.74%) large whereas (0.57%–3.99%) homogenizing dispersal (0.28%–1.71%) limited influences 2A). Deterministic (58.67% May; 60.40% stochastic (41.31% 39.60% balanced assembly. Stochastic (69.52%) (77.21%–87.75%). Generally, differentiating (54.70%–93.17%) (1.71%–4.56%) deterministic affected assemblies, solely determined sorting an 2B). habitat niche breadth 2C). migration rates (m value) derived Sloan neutral model pattern 2D). environmentally constrained is, behaved constructed networks decipher S11 More nodes May. Ratios edges which (Table decreasing increasing potential eukaryotes, When treated whole, number (June April) S12 had S5), suggesting degree interactions. top five core (those highest betweenness centralities) conetworks affiliated Acinetobacter, Candidatus_Aquirestis, Cryptomonas, Deinococcus, Limnobacter, Limnohabitans, Mycobacterium, Rhodoferax S12). ASV_42847 Acinetobacter <1% some even <0.1% (rare taxa) related variables ASV_227008 noticeably 0.05), support Structural equation modeling reveal linkages TLI, diversities, 3). Turbidity (except turn May) 3A). path coefficients under conditions 0.001). models fits data (sample N 27, d.f. denoted nonsignificant χ2 tests SEM (April, 3.094, 0.125; 0.110, 0.740; 0.383, 0.536) 1.357, 0.244; 2.578, 0.108; 1.518, 0.218) direct indirect only 3B). Consequently, larger Physicochemical properties, content, changed temporally [22, 32], individual salinity, light) 33]. comprehensive understanding linkage rarely reported. variations [25], earlier report subtropical flooding 34]. resulted heterogeneity, has not before. demonstrate adjusting microbial terrestrial 35]. determine structure, couple ecosystem functions 36]. diversities specific Future need finding diverse allow better generalization. similar findings 37, 38]. Taxonomic similarities decayed distance, consistent prior [39, 40]. DDRs probably attributable differentiating-dominated homogenizing-dominated communities. It leads [41]. structure might due notable properties. oxygen, salinity) 42, 43]. [42, 44]. coupled function functioning [38], therefore critical throughout space. lakes. assembly, accordance previous notion Tingjiang [29] pools Baltic Sea coast [46]. Yet, differs revealing various Chinese [47] wells North Richland America [48]. Whether dominate seems geospatial 39]. selected however, tend difference, may lead observed assemblies. Furthermore, nutrient-poor determinism-dominated nutrient-rich stochasticity-dominated [49]. clearly seen Additionally, seem versus their lifestyle cell size [50–52]. typically regarded unicellular, multicellular. hyphomycetes characterized filamentous fungi, extreme branching mycelia [53]. Several fungi constitute much sizes bacteria, disperse vegetative animal, insect, actively move using feet, tail, flagella [54], enables easy access abundant flee unfavorable high-temperature, high predation). study contributions directly rely body [52]. complex structures pseudopods) occupy webs. live biofilms [55]. metabolic activity potentials changes explain strong temporally, seasons Lake Taihu [18] Nanhu [22]. Over occurred parallel opposing phenomenon imply close Some therefore, intensive mass developments severely intensify competition Nutrients carbon, sources) exchange sediment via activities [19], offset deficiency bacterioplankton. participants carbon [56, 57]. From protection perspective, should controlled changing presence weaken cycling. primarily penetrability light water, photosynthesis primary producers green [58, 59]. addition, [60], consume available [61], possibly composition, [19, 42]. Though released sediments into 19], supplement meet demand populations scales. multiple copies 16S rRNA gene 18S gene, quantitative polyerase chain reaction (qPCR) will precisely relationship accurately quantifying novel techniques flight spectrometer). Understanding formulate efficient policies. viewpoint practical management, dredging lanthanum-modified bentonite) jointly stage inhibit damage. Collectively, datasets statistical first differentiation embodiments replacement, constraint, shows Our extend plankton's mechanisms. enable guide formulation policies efficiently tropical long scale. 2021, 27 surface (0–0.3 m) sites shallow Wuhan, China S1). 81 Wanzun Sampler, stored sterile polypropylene bags immediately kept approximately 4°C portable refrigerator. visible objects leaves small animals) removed filtering through 5 mm gauzes. Approximately 100 ml filtered remaining part then 0.22-μm polycarbonate membranes (Millipore Corporation) molecular analyses. conductivity situ YSI Pro1020 Quality Tester (Visal). concentrations according standard approaches protocols. Detailed descriptions determination summarized supporting information Method 1). Chl-α, evaluation calculate detailed algorithms previously [8] supplementary materials calculated factor Genomic DNA extracted PowerWater Isolation Kit (MOBIO) manufacturer's instructions. purity concentration NanoDrop 2000 Spectrophotometer (Thermo Fisher Scientific). All placed −80°C. Universal primers 338F (5′-ACT CCT ACG GGA GGC AGC A-3′) 806R (5′-GGA CTA CHV GGG TWT AT-3′) partially amplify 16 S targeting V3-V4 region [62]. Eu565F (5′-CCA GCA SCY GCG GTA ATT CC-3′) Eu981R TTC GTT CTT GAT YRA TGA-3′) V4 [63]. Quantitative PCR absolute ABI VIIA 7 Cycle Real-time System (Applied Biosystems). platform Personal Biotechnology Co., Ltd. raw sequences run QIIME2 pipeline DADA2 obtain denoised, chimera-free, nonsingleton [64]. subsequent analyses, effort done minimum sample eliminated contained 20 reads. trees built FastTree tool [65]. One-way data. Venn diagram, NMDS plot, ANOSIM applied general plankton. Bray–Curtis beta mean nearest taxon (βMNTD) (Bray–Curtis similarity) (1-βMNTD) RDA composition. assessed pure (without factor's influence) tested parameter PERMAVONA [37]. To disassembled "agricolae" "adespatial" packages, visualized "ggtern" "vcd" packages test "mantel.correlog" "vegan" package Null model, employed [29, 66, 67]. divergences (BrayCurtis-based Raup-Crick [RCbray]) (β-nearest [βNTI]) null compute proportions applying "picante" package. distinguished RCbray βNTI, including (βNTI −2), 2), (| βNTI | 2 0.95), −0.95), (homogenizing selection), (variable limitation). [66, 68]. computed Levins' "B" community-level B value (Bcom) breath "spaa" R, whereby Bcom flexibility [69]. contribution evaluating rate "m" [70]. 50% (>14 samples) build Co-occurrence software Gephi v. 0.9.2 (https://gephi.org/) significance Spearman's correlation (r) 0.6 (SEM) "plspm" "sem" R. Wenjie Wan: Conceptualization, methodology, writing–original draft, validation, investigation, funding acquisition. Hans-Peter Grossart: Writing–review editing. Donglan He: validation. Wenzhi Liu: Conceptualization methodology. Shuai Wang: methodology software. Yuyi Yang: writing–review editing, work supported National Natural Science Foundation (42107147 32071614). HPG funded German (DFG) project "PycnoTrap" (GR 1540/37-1). authors declare no conflict interest. sets deposited database Center Short Read Archive accession numbers PRJNA818785 (bacteria) PRJNA818786 (eukaryotes). Important codes (published statisticians) Information. Supplementary (figures, tables, scripts, graphical abstract, slides, videos, translated version, updated materials) online DOI iMeta https://www.imeta.science/. Please note: publisher responsible functionality any supplied authors. Any queries (other missing content) directed corresponding author article.

Language: Английский

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