Advancements in the Application of scRNA-Seq in Breast Research: A Review DOI Open Access
Zhenyu Zhang,

Xiao‐Ming Ma,

Yongfu La

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(24), P. 13706 - 13706

Published: Dec. 22, 2024

Single-cell sequencing technology provides apparent advantages in cell population heterogeneity, allowing individuals to better comprehend tissues and organs. Sequencing is currently moving beyond the standard transcriptome single-cell level, which likely bring new insights into function of breast cells. In this study, we examine primary types involved development, as well achievements study scRNA-seq microenvironment, stressing finding novel subsets using approaches analyzing problems solutions scRNA-seq. Furthermore, are excited about field’s promising future.

Language: Английский

Navigating the immunosuppressive brain tumor microenvironment using spatial biology DOI Creative Commons
Samuel S. Widodo, Marija Dinevska, Stanley S. Stylli

et al.

ImmunoInformatics, Journal Year: 2024, Volume and Issue: 15, P. 100041 - 100041

Published: Aug. 14, 2024

Language: Английский

Citations

0

Optimising a Spatial Gene Expression Protocol to Track Progenitor to Theca Cell Differentiation In Situ. DOI Creative Commons

Michaela Young

Published: Aug. 26, 2024

<p><strong>The theca, a highly specialised stromal cell layer that surrounds ovarian follicles, first appears at the secondary stage of follicle development. While role theca in folliculogenesis is well understood, spatiotemporal dynamics governing differentiation are yet to be fully elucidated. Spatial transcriptomics offers unique insight into molecular processes occur during by capturing mRNA expression patterns within tissues, maintaining their spatial context. The overall objective this thesis was optimise protocol perform mouse tissue. This contributes wider project which aims track progenitor differentiated transition situ using model. I refined protocols for collecting ovaries, and various histological techniques (including freezing, embedding cryosectioning) prioritised integrity morphology tissue imaging, while still allowing recovery high-quality RNA from same sample. As result, able validate preparing optimised sample preparation protocol, tissue-specific permeabilization optimisation STOmics Stereo-seq Transcriptomics kit, contribute final transcriptomic experiment. prepared fresh-frozen block containing four ovaries mice (n=4), sufficient quality (RNA Integrity Number (RIN) 7.4 ± 0.1) proceed with consistently passed all DNA concentration fragment size control checks throughout experiment, indicating successful generating high (both terms quality) used prepare RNA-seq library. serves as valuable resource future studies investigate cellular ovary.</strong></p>

Language: Английский

Citations

0

Advancements in artificial intelligence-driven spatial transcriptomics: Decoding cellular complexity DOI
Nagmi Bano,

Iqra Sajid,

Debmalya Barh

et al.

Elsevier eBooks, Journal Year: 2024, Volume and Issue: unknown, P. 87 - 106

Published: Nov. 29, 2024

Language: Английский

Citations

0

Glabridin exhibits potent inhibitory effects against Toxoplasma gondii in vitro and in vivo DOI Creative Commons
Lu Wang, Bintao Zhai, Chen Wang

et al.

Parasites & Vectors, Journal Year: 2024, Volume and Issue: 17(1)

Published: Dec. 18, 2024

Abstract Background Toxoplasma gondii is an obligate protozoan parasite capable of infecting a wide range warm-blooded animals and humans. Current treatment options, primarily pyrimethamine sulfadiazine, have limitations, such as high recurrence rates, long durations, limited effectiveness against T. . There unmet need for novel, safe, low-toxicity, highly effective treatments. This study aimed to evaluate the anti- effects glabridin, natural compound derived from roots widely used medicinal plant Methods The cytotoxicity glabridin in Vero cells was assessed using CCK-8 cell viability assay. Quantitative polymerase chain reaction (qPCR) targeting Tg-529 gene developed quantify assess inhibitory on proliferation. Ultrastructural changes after were examined electron microscopy. levels reactive oxygen species (ROS) mitochondrial membrane potential (ΔΨm) ROS ΔΨm tachyzoites. Additionally, metabolomics transcriptomics analyses conducted investigate mechanisms underlying glabridin’s effects. Results Glabridin exhibited low toxicity host effectively inhibited invasion proliferation vitro time-dependent manner. Glabridin-treated tachyzoites significant structural alterations, along with increased production reduction ΔΨm. Metabolomic analysis indicated that significantly affected amino acid metabolism pathways In vivo, improved survival rates -infected BALB/c mice at dosage 100 mg/kg. Conclusions demonstrates has potent likely through disruption parasite. These findings highlight promising therapeutic agent toxoplasmosis. Graphical abstract

Language: Английский

Citations

0

Advancements in the Application of scRNA-Seq in Breast Research: A Review DOI Open Access
Zhenyu Zhang,

Xiao‐Ming Ma,

Yongfu La

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(24), P. 13706 - 13706

Published: Dec. 22, 2024

Single-cell sequencing technology provides apparent advantages in cell population heterogeneity, allowing individuals to better comprehend tissues and organs. Sequencing is currently moving beyond the standard transcriptome single-cell level, which likely bring new insights into function of breast cells. In this study, we examine primary types involved development, as well achievements study scRNA-seq microenvironment, stressing finding novel subsets using approaches analyzing problems solutions scRNA-seq. Furthermore, are excited about field’s promising future.

Language: Английский

Citations

0