FT-GNN Tool for Bridging HRMS Features and Bioactivity: Uncovering Unidentified Estrogen Receptor Agonists in Sewage DOI

Fan Fan,

Fu Liu,

Qingmiao Yu

et al.

Environmental Science & Technology, Journal Year: 2025, Volume and Issue: unknown

Published: April 9, 2025

Identifying primary estrogen receptor (ER) agonists in municipal sewage is essential for ensuring the health of aquatic environments. Given complex and variable chemical composition sewage, predominant ER remain unclear. High-resolution mass spectrometry (HRMS)-based models have been developed to predict compound bioactivity matrices, but further optimization needed effectively bridge HRMS features with agonists. To address this challenge, an FT-GNN (fragmentation tree-based graph neural network) model was proposed. limited data class imbalance, augmentation performed using predictions within applicability domain (AD) oversampling technique (OTE). Model development results demonstrated that integrating improved balanced accuracy (bACC) value by 6%-31%. The model, a high bACC identify more true agonists, efficiently classified tens thousands unidentified reducing postprocessing workload nontargeted screening. Analysis agonist transformation during treatment revealed anaerobic stage as key both their removal formation. Estrogenic effect balance analysis suggests α-E2 9,11-didehydroestriol may be two previously overlooked Collectively, application are crucial advancements toward credible tracking efficient control estrogenic risks water.

Language: Английский

Recent advances and challenges in the analysis of natural toxins DOI
Ids B Lemmink,

Leonie V Straub,

Toine F. H. Bovee

et al.

Advances in food and nutrition research, Journal Year: 2024, Volume and Issue: unknown, P. 67 - 144

Published: Jan. 1, 2024

Language: Английский

Citations

3

Prioritization Strategies in Non-Target Screening of Environmental Samples by Chromatography – High-Resolution Mass Spectrometry: A Tutorial DOI
Jonathan Zweigle, Selina Tisler, Giorgio Tomasi

et al.

Published: Jan. 1, 2025

Language: Английский

Citations

0

Advancing non-target analysis of emerging environmental contaminants with machine learning: Current status and future implications DOI Creative Commons
Alexa Canchola, Lang Tran, Wonsik Woo

et al.

Environment International, Journal Year: 2025, Volume and Issue: unknown, P. 109404 - 109404

Published: March 1, 2025

Emerging environmental contaminants (EECs) such as pharmaceuticals, pesticides, and industrial chemicals pose significant challenges for detection identification due to their structural diversity lack of analytical standards. Traditional targeted screening methods often fail detect these compounds, making non-target analysis (NTA) using high-resolution mass spectrometry (HRMS) essential identifying unknown or suspected contaminants. However, interpreting the vast datasets generated by HRMS is complex requires advanced data processing techniques. Recent advancements in machine learning (ML) models offer great potential enhancing NTA applications. As such, we reviewed key developments, including optimizing workflows computational tools, improved chemical structure identification, quantification methods, enhanced toxicity prediction capabilities. It also discusses future perspectives field, refining ML tools mixtures, improving inter-laboratory validation, further integrating into risk assessment frameworks. By addressing challenges, ML-assisted can significantly enhance detection, quantification, evaluation EECs, ultimately contributing more effective monitoring public health protection.

Language: Английский

Citations

0

Prioritization Strategies for Non-Target Screening in Environmental Samples by Chromatography – High-Resolution Mass Spectrometry: A Tutorial DOI
Jonathan Zweigle, Selina Tisler, Marta Bevilacqua

et al.

Journal of Chromatography A, Journal Year: 2025, Volume and Issue: unknown, P. 465944 - 465944

Published: April 1, 2025

Language: Английский

Citations

0

FT-GNN Tool for Bridging HRMS Features and Bioactivity: Uncovering Unidentified Estrogen Receptor Agonists in Sewage DOI

Fan Fan,

Fu Liu,

Qingmiao Yu

et al.

Environmental Science & Technology, Journal Year: 2025, Volume and Issue: unknown

Published: April 9, 2025

Identifying primary estrogen receptor (ER) agonists in municipal sewage is essential for ensuring the health of aquatic environments. Given complex and variable chemical composition sewage, predominant ER remain unclear. High-resolution mass spectrometry (HRMS)-based models have been developed to predict compound bioactivity matrices, but further optimization needed effectively bridge HRMS features with agonists. To address this challenge, an FT-GNN (fragmentation tree-based graph neural network) model was proposed. limited data class imbalance, augmentation performed using predictions within applicability domain (AD) oversampling technique (OTE). Model development results demonstrated that integrating improved balanced accuracy (bACC) value by 6%-31%. The model, a high bACC identify more true agonists, efficiently classified tens thousands unidentified reducing postprocessing workload nontargeted screening. Analysis agonist transformation during treatment revealed anaerobic stage as key both their removal formation. Estrogenic effect balance analysis suggests α-E2 9,11-didehydroestriol may be two previously overlooked Collectively, application are crucial advancements toward credible tracking efficient control estrogenic risks water.

Language: Английский

Citations

0