Strategies for Robust, Accurate, and Generalisable Benchmarking of Drug Discovery Platforms DOI Creative Commons
Melissa Van Norden, William Mangione, Zackary Falls

et al.

Published: Dec. 24, 2024

Benchmarking is an important step in the improvement, assessment, and comparison of performance drug discovery platforms technologies. We revised existing benchmarking protocols our Computational Analysis Novel Drug Opportunities (CANDO) multiscale therapeutic platform to improve utility performance. optimized multiple parameters used candidate prediction assessment with these updated protocols. CANDO ranked 7.4% known drugs top 10 compounds for their respective diseases/indications based on drug-indication associations/mappings obtained from Comparative Toxicogenomics Database (CTD) using parameters. This increased 12.1% when mappings were Therapeutic Targets Database. Performance indication was weakly correlated (Spearman correlation coefficient _>_0.3) size (number associated indication) moderately (correlation _>_0.5) compound chemical similarity. There also moderate between new original assessing per each protocol. results dependent source mapping used: a higher proportion indication-associated recalled 100 (TTD), which only includes FDA-approved associations (in contrast CTD, drawn literature). created compbench, publicly available head-to-head protocol that allows consistent different platforms. Using this protocol, we compared two pipelines repurposing within CANDO; primary pipeline outperformed another similarity-based still development clusters signatures Gene Ontology terms. Our study sets precedent complete, comprehensive, comparable platforms, resulting more accurate predictions.

Language: Английский

Artificial Intelligence (AI) Applications in Drug Discovery and Drug Delivery: Revolutionizing Personalized Medicine DOI Creative Commons
Dolores R. Serrano,

Francis C. Luciano,

Brayan J. Anaya

et al.

Pharmaceutics, Journal Year: 2024, Volume and Issue: 16(10), P. 1328 - 1328

Published: Oct. 14, 2024

Artificial intelligence (AI) encompasses a broad spectrum of techniques that have been utilized by pharmaceutical companies for decades, including machine learning, deep and other advanced computational methods. These innovations unlocked unprecedented opportunities the acceleration drug discovery delivery, optimization treatment regimens, improvement patient outcomes. AI is swiftly transforming industry, revolutionizing everything from development to personalized medicine, target identification validation, selection excipients, prediction synthetic route, supply chain optimization, monitoring during continuous manufacturing processes, or predictive maintenance, among others. While integration promises enhance efficiency, reduce costs, improve both medicines health, it also raises important questions regulatory point view. In this review article, we will present comprehensive overview AI's applications in covering areas such as discovery, safety, more. By analyzing current research trends case studies, aim shed light on transformative impact industry its broader implications healthcare.

Language: Английский

Citations

48

Benchmarking AI-powered docking methods from the perspective of virtual screening DOI
Shukai Gu, Chao Shen, Xujun Zhang

et al.

Nature Machine Intelligence, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 13, 2025

Language: Английский

Citations

2

An in-depth review of AI-powered advancements in cancer drug discovery DOI
Le Huu Nhat Minh,

Phat Ky Nguyen,

Nguyen Thi Trang

et al.

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Journal Year: 2025, Volume and Issue: unknown, P. 167680 - 167680

Published: Jan. 1, 2025

Language: Английский

Citations

1

Harnessing Insect Chemosensory and Mechanosensory Receptors Involved in Feeding for Precision Pest Management DOI Creative Commons
Ting‐Wei Mi,

Cheng‐Wang Sheng,

C. Lee

et al.

Life, Journal Year: 2025, Volume and Issue: 15(1), P. 110 - 110

Published: Jan. 16, 2025

Chemosensation and mechanosensation are vital to insects’ survival behavior, shaping critical physiological processes such as feeding, metabolism, mating, reproduction. During insects rely on diverse chemosensory mechanosensory receptors distinguish between nutritious harmful substances, enabling them select suitable food sources while avoiding toxins. These distributed across various body parts, allowing detect environmental cues about quality adjust their behaviors accordingly. A deeper understanding of insect sensory physiology, especially during not only enhances our knowledge biology but also offers significant opportunities for practical applications. This review highlights recent advancements in research feeding-related receptors, covering a wide range species, from the model organism Drosophila melanogaster agricultural human pests. Additionally, this examines potential targeting precision pest control. Disrupting feeding reproduction emerges promising strategy management. By interfering with these essential behaviors, we can effectively control populations minimizing impacts promoting ecological balance.

Language: Английский

Citations

0

Multiobjective Optimization of Biological and Physical Properties in Drug Discovery DOI
M. Paul Gleeson,

Dino Montanari

Elsevier eBooks, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0

Ginsenoside Rd and chrysophanol: Modulating the serine-glycine-one-carbon pathway to enhance neuroprotection in intracerebral hemorrhage DOI
Xingping Zhao, Huifen Zhou,

Zhiyong Pan

et al.

Bioorganic Chemistry, Journal Year: 2025, Volume and Issue: 160, P. 108493 - 108493

Published: April 19, 2025

Language: Английский

Citations

0

Development and Evaluation of a Novel Chlorogenic Acid Analogue with Enhanced Antioxidant Activity in Vitro DOI
Lei Zhu, Zhonghua Shi,

Huichuan Luo

et al.

Journal of Molecular Structure, Journal Year: 2025, Volume and Issue: unknown, P. 142626 - 142626

Published: May 1, 2025

Language: Английский

Citations

0

Computational advancements to facilitate therapeutic application of phytochemicals: Where do we stand? DOI Creative Commons
Soumyadip Ghosh, Soumya Basu,

Titirsha Kayal

et al.

Deleted Journal, Journal Year: 2025, Volume and Issue: 7(5)

Published: May 14, 2025

Abstract The bioactivity of phytochemicals has been widely reported in the literature, however, abundance phytochemical resources and their potent activities require laborious screening methods for feasible applications. Owing to lack pharmacologically safe therapeutic options tackle emerging infections drug resistance, there is an increasing interest diverse potential bioactive phytochemicals. However, consolidated reports on same are very limited. present article provides overview exemplary studies from last decade application silico that have guided fast efficient domain pertains functional aspects phytochemicals, such as antibacterial, antiviral, antiparasitic, antifungal, antioxidant, anti-inflammatory, anticancer effects. Based reviewed computational approaches, a common popularly adopted pipeline was illustrated utility A list databases provided help researchers identify phytocompounds research. prospect generating high volume research data can facilitate machine learning artificial intelligence-based future predictions during healthcare emergencies disease outbreaks.

Language: Английский

Citations

0

Explainable biology for improved therapies in precision medicine: AI is not enough DOI
Igor Jurišica

Best Practice & Research Clinical Rheumatology, Journal Year: 2024, Volume and Issue: unknown, P. 102006 - 102006

Published: Sept. 1, 2024

Language: Английский

Citations

2

Artificial intelligence advances drug delivery system and its clinical transition DOI
Hui Wang, Xiaoyan You, Guoping Zhao

et al.

Science Bulletin, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 1, 2024

Language: Английский

Citations

2