bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 27, 2023
ABSTRACT
We
report
the
controlled
release
of
an
antimicrobial
peptide
using
enzyme-activatable
prodrugs
to
treat
and
detect
Candida
albicans
Porphyromonas
gingivalis
.
Our
motivation
lies
in
prevalence
these
microorganisms
subgingival
area
where
frequency
fungal
colonization
increases
with
periodontal
disease.
This
work
is
based
on
that
both
therapeutic
induces
a
color
change
nanoparticle
reporter.
was
then
built
into
zwitterionic
prodrug
quenches
its
activity
until
activation
by
protease
inherent
pathogens
interest:
SAP9
or
RgpB
for
C.
P.
,
respectively.
first
confirmed
intact
has
negligible
toxicity
fungal,
bacterial,
mammalian
cells
absent
trigger.
Next,
impact
assessed
via
disk
diffusion
viability
assays
showed
minimum
inhibitory
concentration
3.1
–
16
µg/mL,
which
comparable
alone
(absent
integration
prodrug).
Finally,
design
exploited
colorimetric
detection
proteases.
When
were
cleaved,
plasmonic
nanoparticles
aggregated
causing
limit
10
nM
gold
3
silver
nanoparticles.
approach
value
as
convenient
selective
sensing
protease-induced
treatment
mechanism
bioinspired
peptides.
Abstract
Figure
ACS Applied Nano Materials,
Journal Year:
2024,
Volume and Issue:
7(8), P. 9136 - 9146
Published: April 15, 2024
We
report
a
silver
nanoparticle
(AgNP)
sensor
array
to
detect
SARS-CoV-2
viral
particles
utilizing
five
peptide
receptors
produce
colorimetric
response.
show
that
the
interaction
of
virus
with
peptides
interferes
shift
in
plasmonic
absorbance
and
hinders
formation
snowflake-like
fractal
assemblies
between
AgNPs
bridging
peptides.
The
limit
detection
water
was
500,000
copies/mL.
demonstrate
capabilities
distinguish
(Beta,
Delta,
Omicron
variants)
from
influenza
at
99%
confidence
level
through
linear
discriminant
analysis.
also
able
discriminate
three
out
negative
exhaled
breath
condensate
samples
positive
EBC
samples.
Theranostics,
Journal Year:
2024,
Volume and Issue:
14(4), P. 1781 - 1793
Published: Jan. 1, 2024
Candida
albicans
and
Porphyromonas
gingivalis
are
prevalent
in
the
subgingival
area
where
frequency
of
fungal
colonization
increases
with
periodontal
disease.Candida's
transition
to
a
pathogenic
state
its
interaction
P.
exacerbate
disease
severity.However,
current
treatments
for
these
infections
differ,
combined
therapy
remains
unexplored.This
work
is
based
on
an
antimicrobial
peptide
that
therapeutic
induces
color
change
nanoparticle
reporter.Methods:
We
built
characterized
two
enzyme-activatable
prodrugs
treat
detect
C.
via
controlled
release
peptide.The
zwitterionic
prodrug
quenches
peptide's
activity
until
activation
by
protease
inherent
pathogens
(SAP9
RgpB
gingivalis).The
toxicity
intact
was
evaluated
against
fungal,
bacterial,
mammalian
cells.Therapeutic
efficacy
assessed
through
microscopy,
disk
diffusion,
viability
assays,
comparing
alone.Finally,
we
developed
colorimetric
detection
system
aggregation
plasmonic
nanoparticles.Results:
The
showed
negligible
cells
absent
trigger.The
impact
comparable
alone,
minimum
inhibitory
concentration
3.1
-16
µg/mL.The
enzymatic
returned
limit
10
nM
gold
nanoparticles
3
silver
nanoparticles.Conclusion:
This
approach
offers
convenient
selective
sensing
protease-induced
treatment
mechanism
bioinspired
peptides.
Analytical Chemistry,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 27, 2025
Colorectal
cancer
(CRC)
ranks
as
the
third
most
prevalent
globally,
both
in
terms
of
diagnoses
and
cancer-related
mortality.
Increasing
evidence
suggests
that
an
imbalance
intestinal
flora
can
contribute
to
progression
CRC,
fecal
microbiota
may
serve
potential
biomarkers
for
its
screening
diagnosis.
Notably,
Porphyromonas
gingivalis
has
been
identified
malignant
tissues
feces
CRC
patients,
establishing
it
a
significant
biomarker
early
screening,
diagnosis,
prognostic
assessment
CRC.
Current
methods
detecting
P.
face
numerous
challenges,
including
high
costs,
complex
procedures,
lengthy
implementation
times.
Therefore,
developing
rapid,
highly
specific,
sensitive
detection
is
great
importance.
In
this
study,
we
utilized
whole-bacterium
systematic
evolution
ligands
by
exponential
enrichment
method
identify
specific
high-affinity
aptamers
targeting
through
15
selection
cycles.
Subsequently,
developed
aptasensor
driven
MoS2
nanoflowers,
which
integrates
strand
displacement
amplification
CRISPR/Cas12a
double
gingivalis,
achieving
limit
10
CFU/mL.
Using
aptasensor,
evaluated
abundance
clinical
samples
observed
significantly
higher
levels
patients
compared
healthy
individuals,
corroborating
results
obtained
from
quantitative
polymerase
chain
reaction.
summary,
first
time,
representing
promising
new
approach
identification
with
ACS Nano,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 21, 2025
We
present
a
strategy
for
constructing
activatable
photoacoustic
imaging
(PAI)
probes
in
vivo
enzyme
activity
measurements,
based
on
dissociation
previously
applied
to
vitro
sensing.
Unlike
conventional
nanoparticle
aggregation
strategies,
minimizes
false
positives
and
functions
effectively
complex
biological
environments.
Overcoming
the
challenge
of
dissociating
nanostructure
aggregates,
which
arises
from
strong
van
der
Waals
forces
at
short
distances,
we
demonstrate
controlled
assembly
citrate-capped
gold
nanorods
(AuNRs-citrate)
using
diarginine
peptide
additive
thiolated
polyethylene
glycol
(HS-PEG-OMe),
respectively.
This
mechanism
enables
precise
control
optical
(PA)
properties
AuNRs
both
settings.
Building
these
findings,
engineered
an
enzyme-sensitive
PAI
probe
(AuNRs@RgpB)
composed
AuNR
assemblies
PEG-peptide
conjugate
with
protease-specific
cleavage
sequence.
The
detects
Arg-specific
gingipain
(RgpB),
protease
expressed
by
Porphyromonas
gingivalis
associated
periodontal
disease
Alzheimer's
disease.
Proteolytic
sequence
triggers
dissociation,
resulting
enhanced
PA
signal
output.
was
designed
be
injected
intrathecally
preclinical
trials
image
gingipains
investigate
value
inhibitors
developed
probe's
performance
characterized
UV-vis
spectroscopy
PAI,
achieving
detection
limits
5
20
nM,
In
studies
involved
intracranial
injection
AuNRs@RgpB
into
RgpB-containing
murine
models,
monitoring
over
time.
RgpB
produced
four-fold
increase
within
2
h,
while
P.
gingivalis-infected
mice
showed
similar
enhancement.
Specificity
confirmed
negligible
responses
Fusobacterium
nucleatum,
non-RgpB-producing
bacterium.
Additionally,
system
demonstrated
utility
drug
development
successfully
inhibition
(leupeptin
KYT-1)
models.
Beyond
its
immediate
application
detection,
this
modular
approach
plasmonic-based
sensing
holds
significant
potential
detecting
other
proteases,
advancing
nanotechnology
protease-targeted
diagnostics.
Frontiers in Bioengineering and Biotechnology,
Journal Year:
2024,
Volume and Issue:
12
Published: March 13, 2024
Hydrolytic
enzymes
play
crucial
roles
in
cellular
processes,
and
dysregulation
of
their
activities
is
implicated
various
physiological
pathological
conditions.
These
cleave
substrates
such
as
peptide
bonds,
phosphodiester
glycosidic
other
esters.
Detecting
aberrant
hydrolase
activity
vital
for
understanding
disease
mechanisms
developing
targeted
therapeutic
interventions.
This
study
introduces
a
novel
approach
to
measuring
using
giant
magnetoresistive
(GMR)
spin
valve
sensors.
sensors
change
resistance
response
magnetic
fields,
here,
they
are
functionalized
with
specific
hydrolases
conjugated
nanoparticles
(MNPs).
When
cleaves
its
substrate,
the
tethered
nanoparticle
detaches,
causing
measurable
shift
sensor's
resistance.
design
translates
into
real-time,
activity-dependent
signal.
The
assay
simple,
rapid,
requires
no
washing
steps,
making
it
ideal
point-of-care
settings.
Unlike
fluorescent
methods,
avoids
issues
like
autofluorescence
photobleaching,
broadening
applicability
diverse
biofluids.
Furthermore,
sensor
array
contains
80
individually
addressable
sensors,
allowing
simultaneous
measurement
multiple
single
reaction.
versatility
this
method
demonstrated
nucleases,
Bcu
I
DNase
I,
peptidase,
human
neutrophil
elastase.
To
demonstrate
clinical
application,
we
show
that
elastase
sputum
from
cystic
fibrosis
patients
hydrolyze
peptide-GMR
cleavage
rate
strongly
correlates
traditional
fluorogenic
substrate.
innovative
addresses
challenges
associated
enzyme
techniques,
providing
promising
tool
real-time
quantification
biological
contexts.
Aggregate,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 10, 2024
Abstract
Hierarchical
plasmonic
biomaterials
constructed
from
small
nanoparticles
(NPs)
that
combine
into
larger
micron‐sized
structures
exhibit
unique
properties
can
be
harnessed
for
various
applications.
Using
diffusion‐limited
aggregation
(DLA)
and
defined
peptide
sequences,
we
developed
fractal
silver
with
a
Brownian
tree
structure.
This
method
avoids
complex
redox
chemistry
allows
precise
control
of
interparticle
distance
material
morphology
through
design
concentration.
Our
systematic
investigation
revealed
how
charge,
length,
sequence
impact
biomaterial
morphology,
confirming
peptides
act
as
bridging
motifs
between
particles
induce
coalescence.
Characterization
spectroscopy
microscopy
demonstrated
arginine‐based
are
optimal
assembly
based
on
both
quantitative
qualitative
measurements.
Additionally,
our
study
diffusion
behavior
confirmed
the
effect
particle
size,
temperature,
medium
viscosity
nanoparticle
mobility.
work
also
provides
insights
facet
distribution
in
NPs
their
mechanisms,
offering
potential
advancements
materials
medical,
environmental,
electronic
Analytical Chemistry,
Journal Year:
2024,
Volume and Issue:
96(49), P. 19304 - 19311
Published: Nov. 22, 2024
Peptide-engineered
nanoparticles
have
great
potential
for
biomedical
research
and
application.
In
this
work,
we
designed
fabricated
an
electrochemical
biosensor
based
on
peptide-guided
assembly
of
silver
(AgNPs),
in
which
a
peptide
is
endowed
with
dual
functions
to
recognize
target
guide
AgNPs.
As
proof
concept,
the
performance
validated
by
quantifying
human
epidermal
growth
factor
receptor
2
(HER2)
protein.
detail,
end
HER2-specific
binding
grafted
positively
charged
peptide,
can
orderly
AgNPs,
while
signals
be
obtained
through
phosphine-silver
coordination.
Using
biosensor,
HER2
protein
quantified
high
sensitivity
specificity,
limit
detection
as
low
0.05
pg/mL.
Moreover,
antifouling
electrode
surface
prepared
modification
layer
zwitterionic
allows
used
serum
from
breast
cancer
patients,
provides
clear
evidence
distinction
HER2+
patients
HER2-
patients.
Plasmonic
nanoparticle-based
biosensors
often
report
a
colorimetric
signal
through
the
aggregation
or
clustering
of
nanoparticles
(NPs),
but
these
mechanisms
typically
struggle
to
function
in
complex
biofluids.
Here,
we
matrix-insensitive
sensor
array
approach
detect
bacteria,
fungi,
and
viruses
whose
is
based
on
dissociation
peptide-aggregated
NPs
by
thiolated
polyethylene
glycol
(HS-PEG)
polymers.
We
show
that
HS-PEGs
differing
sizes
have
varying
capabilities
dissociate
citrate-capped
gold
nanoparticle
(AuNP)
silver
(AgNP)
assemblies.
The
dissociative
abilities
were
used
this
discriminate
at
90%
confidence
level
microorganisms