In Silico Analysis and Development of the Secretory Expression of D-Psicose-3-Epimerase in Escherichia coli DOI Creative Commons
Nisit Watthanasakphuban, Boontiwa Ninchan, Phitsanu Pinmanee

et al.

Microorganisms, Journal Year: 2024, Volume and Issue: 12(8), P. 1574 - 1574

Published: Aug. 1, 2024

D-psicose-3-epimerase (DPEase), a key enzyme for D-psicose production, has been successfully expressed in

Language: Английский

Relieving metabolic burden to improve robustness and bioproduction by industrial microorganisms DOI Creative Commons
Jiwei Mao, Hongyu Zhang, Yu Chen

et al.

Biotechnology Advances, Journal Year: 2024, Volume and Issue: 74, P. 108401 - 108401

Published: June 27, 2024

Metabolic burden is defined by the influence of genetic manipulation and environmental perturbations on distribution cellular resources. The rewiring microbial metabolism for bio-based chemical production often leads to a metabolic burden, followed adverse physiological effects, such as impaired cell growth low product yields. Alleviating imposed undesirable changes has become an increasingly attractive approach constructing robust factories. In this review, we provide brief overview engineering, focusing specifically recent developments strategies diminishing while improving robustness yield. A variety examples are presented showcase promise engineering in facilitating design construction Finally, challenges limitations encountered discussed.

Language: Английский

Citations

24

Modified U-Net with attention gate for enhanced automated brain tumor segmentation DOI
Shoffan Saifullah, Rafał Dreżewski, Anton Yudhana

et al.

Neural Computing and Applications, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 2, 2025

Language: Английский

Citations

1

The Development and Opportunities of Predictive Biotechnology DOI Creative Commons
Bettina M. Nestl, Bernd A. Nebel, Verena Resch

et al.

ChemBioChem, Journal Year: 2024, Volume and Issue: 25(13)

Published: May 7, 2024

Recent advances in bioeconomy allow a holistic view of existing and new process chains enable novel production routines continuously advanced by academia industry. All this progress benefits from growing number prediction tools that have found their way into the field. For example, automated genome annotations, for building model structures proteins, structural protein methods such as AlphaFold2

Language: Английский

Citations

6

Top 20 influential AI-based technologies in chemistry DOI Creative Commons
Valentine P. Ananikov

Artificial Intelligence Chemistry, Journal Year: 2024, Volume and Issue: 2(2), P. 100075 - 100075

Published: July 27, 2024

The beginning and ripening of digital chemistry is analyzed focusing on the role artificial intelligence (AI) in an expected leap chemical sciences to bring this area next evolutionary level. analytic description selects highlights top 20 AI-based technologies 7 broader themes that are reshaping field. It underscores integration tools such as machine learning, big data, twins, Internet Things (IoT), robotic platforms, smart control processes, virtual reality blockchain, among many others, enhancing research methods, educational approaches, industrial practices chemistry. significance study lies its focused overview how these innovations foster a more efficient, sustainable, innovative future sciences. This article not only illustrates transformative impact but also draws new pathways chemistry, offering broad appeal researchers, educators, industry professionals embrace advancements for addressing contemporary challenges

Language: Английский

Citations

6

Machine learning-assisted synthetic biology of cyanobacteria and microalgae DOI

Weijia Jin,

Fangzhong Wang,

Lei Chen

et al.

Algal Research, Journal Year: 2025, Volume and Issue: unknown, P. 103911 - 103911

Published: Jan. 1, 2025

Language: Английский

Citations

0

A Paradigm of Computer Vision and Deep Learning Empowers the Strain Screening and Bioprocess Detection DOI Open Access
Feng Xu, Su Li, Yuan Wang

et al.

Biotechnology and Bioengineering, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 16, 2025

ABSTRACT High‐performance strain and corresponding fermentation process are essential for achieving efficient biomanufacturing. However, conventional offline detection methods products cumbersome less stable, hindering the “Test” module in operation of “Design‐Build‐Test‐Learn” cycle screening optimization. This study proposed validated an innovative research paradigm combining computer vision with deep learning to facilitate selection effective A practical framework was developed gentamicin C1a titer as a proof‐of‐concept, using extract different color space components across various cultivation systems. Subsequently, by integrating data preprocessing algorithm design, prediction model 1D‐CNN Z‐score preprocessing, correlation coefficient ( R 2 ) 0.9862 C1a. Furthermore, this successfully applied high‐yield real‐time monitoring extended rapid fluorescent protein expression promoter library construction. The visual sensing provides theoretical support standardization digital color‐changing bioprocesses.

Language: Английский

Citations

0

Machine Learning Approaches in Metabolic Pathway Predictions and Drug-Target Interactions: Advancing Drug Discovery DOI
Mohamed E. Hasan, Ramanjaneyulu Allam, Alaa A. Hemeida

et al.

Published: Jan. 1, 2025

Language: Английский

Citations

0

Challenges and limitations of computer-aided drug design DOI
Souvik Sur,

Hemlata Nimesh

Advances in pharmacology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

0

Large language model for knowledge synthesis and AI-enhanced biomanufacturing DOI Creative Commons
Wenyu Li, Zhitao Mao, Zhengyang Xiao

et al.

Trends in biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: March 1, 2025

Large language models (LLMs) are transforming synthetic biology (SynBio) education and research. In this review we cover the advancements potential impacts of LLMs in biomanufacturing. First, summarize recent developments compare capabilities US Chinese addressing fundamental SynBio questions. Second, discuss application extracting information from unstructured data, constructing knowledge graphs, enabling retrieval-augmented generation. Third, anticipate that will not only revolutionize design-build-test-learn (DBTL) cycle metabolic modeling engineering but also enable self-driving laboratories future Finally, emphasize need for establishing benchmarks LLMs, fostering trustworthy synthesis, developing biosecurity frameworks to prevent misuse, encouraging collaboration among artificial intelligence (AI) scientists, researchers, bioprocess engineers.

Language: Английский

Citations

0

Genetic circuits in synthetic biology: broadening the toolbox of regulatory devices DOI Creative Commons
Marik M. Müller, Katja M. Arndt, Stefan A. Hoffmann

et al.

Frontiers in Synthetic Biology, Journal Year: 2025, Volume and Issue: 3

Published: March 7, 2025

Devices sensing inputs and generating outputs are fundamental regulatory units, as such the basis of more complex networks. We provide an overview devices used building blocks in synthetic biology, how genetic circuitry is being constructed from them. first comprehensively explore operating at different levels gene regulation, with action modes on DNA sequence, to transcriptional, translational post-translational control. then discuss design principles constructing circuits basic addressing challenges orthogonality, context-dependence, noise, complexity. present examples circuitry, including bistable switches, logic gates, signal amplification, memory for biocomputation. How artificial can be useful real-life applications illustrated bioproduction, living therapeutics, biosafety. Our aim a comprehensive toolbox profound understanding their potential diverse applications.

Language: Английский

Citations

0