bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: May 13, 2025
Abstract
Prochlorococcus
is
a
diverse
and
widespread
cyanobacterium
with
significant
contributions
to
the
marine
nitrogen
carbon
cycles.
Some
reduce
divert
up
20-30%
of
nitrate
that
they
take
external
pools
nitrite.
Given
nitrite
central
intermediate
cycle
highly
abundant
in
nitrogen-limited
waters,
our
goal
was
advance
understanding
cycling
context
limitation.
Here
we
observe
nitrate-limited
have
cell-specific
production
rates
are
approximately
magnitude
higher
than
nitrogen-replete
when
challenged
pulse
nitrate.
Nitrite
unchanged
or
depressed
during
light
cold
shocks,
suggesting
not
used
as
an
alternative
electron
acceptor
mitigate
impacts
excess
photochemically
generated
electrons.
These
results
suggest
regions
where
phytoplankton
growth
limited
by
nitrogen,
cells
could
be
primed
transform
substantial
quantities
into
extracellular
episodic
upwellings
nitrate-rich
water.
important
cycle,
these
ramifications
for
open
ocean
ecosystems.
Global Biogeochemical Cycles,
Journal Year:
2021,
Volume and Issue:
35(4)
Published: March 24, 2021
Abstract
Quantitative
knowledge
about
the
burial
of
sedimentary
components
at
seafloor
has
wide‐ranging
implications
in
ocean
science,
from
global
climate
to
continental
weathering.
The
use
230
Th‐normalized
fluxes
reduces
uncertainties
that
many
prior
studies
faced
by
accounting
for
effects
sediment
redistribution
bottom
currents
and
minimizing
impact
age
model
uncertainty.
Here
we
employ
a
recently
compiled
data
set
with
an
updated
database
surface
composition
derive
atlases
deep‐sea
flux
calcium
carbonate,
biogenic
opal,
total
organic
carbon
(TOC),
nonbiogenic
material,
iron,
mercury,
excess
barium
(Ba
xs
).
spatial
patterns
major
component
are
mainly
consistent
work,
but
new
quantitative
estimates
allow
evaluations
budgets.
Our
integrated
136
Tg
C/yr
CaCO
3
,
153
Si/yr
20Tg
TOC,
220
Mg
Hg/yr,
2.6
Ba
/yr.
This
opal
is
roughly
factor
2
increase
over
previous
estimates,
important
Si
cycle.
Sedimentary
Fe
reflect
mixture
sources
including
lithogenic
hydrothermal
inputs
authigenic
phases.
some
commonly
used
paleo‐productivity
proxies
(TOC,
)
not
well‐correlated
geographically
satellite‐based
productivity
estimates.
compilation
provides
detailed
regional
information,
which
will
help
refine
understanding
preservation.
Biogeosciences,
Journal Year:
2025,
Volume and Issue:
22(4), P. 863 - 957
Published: Feb. 18, 2025
Abstract.
A
growing
body
of
observations
has
revealed
rapid
changes
in
both
the
total
inventory
and
distribution
marine
oxygen
over
latter
half
20th
century,
leading
to
increased
interest
extending
oxygenation
records
into
past.
The
use
paleo-oxygen
proxies
potential
extend
spatial
temporal
range
current
records,
constrain
pre-anthropogenic
baselines,
provide
datasets
necessary
test
climate
models
under
different
boundary
conditions,
ultimately
understand
how
ocean
responds
beyond
decadal-scale
changes.
This
review
seeks
summarize
state
knowledge
about
for
reconstructing
Cenozoic
oxygen:
sedimentary
features,
redox-sensitive
trace
elements
isotopes,
biomarkers,
nitrogen
foraminiferal
elements,
assemblages,
morphometrics,
benthic
carbon
isotope
gradients.
Taking
stock
each
proxy
reveals
some
common
limitations
as
majority
functions
best
at
low-oxygen
concentrations,
many
reflect
multiple
environmental
drivers.
We
also
highlight
recent
breakthroughs
geochemistry
approaches
constraining
pelagic
(in
addition
benthic)
that
are
rapidly
advancing
field.
In
light
emergence
new
persistent
driver
problem,
need
multi-proxy
data
storage
sharing
adhere
principles
findability,
accessibility,
interoperability,
reusability
(FAIR)
is
emphasized.
Continued
refinements
proxy–proxy
proxy–model
comparisons
likely
support
needs
oceanographers
paleoceanographers
interested
paleo-oxygenation
records.
Annual Review of Marine Science,
Journal Year:
2022,
Volume and Issue:
15(1), P. 383 - 406
Published: Sept. 13, 2022
The
micronutrient
iron
plays
a
major
role
in
setting
the
magnitude
and
distribution
of
primary
production
across
global
ocean.
As
such,
an
understanding
sources,
sinks,
internal
cycling
processes
that
drive
oceanic
is
key
to
unlocking
iron's
carbon
cycle
climate,
both
today
geologic
past.
Iron
isotopic
analyses
seawater
have
emerged
as
transformative
tool
for
diagnosing
sources
ocean
tracing
biogeochemical
processes.
In
this
review,
we
summarize
end-member
isotope
signatures
different
source
fluxes
highlight
novel
insights
into
provenance
gained
using
tracer.
We
also
review
ways
which
fractionation
might
be
used
understand
iron,
including
speciation
changes,
biological
uptake,
particle
scavenging.
conclude
with
overview
future
research
needed
expand
utilization
cutting-edge
Frontiers in Earth Science,
Journal Year:
2022,
Volume and Issue:
10
Published: Nov. 23, 2022
Sedimentary
rocks
contain
a
unique
record
of
the
evolution
Earth
system.
Deciphering
this
requires
robust
understanding
identity,
origin,
composition,
and
post-depositional
history
individual
constituents.
Petrographic
analysis
informed
by
Scanning
Electron
Microscope
-
Energy
Dispersive
Spectroscopy
(SEM-EDS)
mineral
mapping
can
reveal
morphology
petrological
context
each
imaged
grain,
making
it
valuable
tool
in
Scientist’s
analytical
arsenal.
Recent
technological
developments,
including
quantitative
deconvolution
mixed-phase
spectra
(producing
“mixels”),
now
allow
rapid
SEM-EDS-based
broad
range
sedimentary
rocks,
previously
troublesome
fine-grained
lithologies
that
comprise
most
record.
Here,
we
test
reliability
preferred
work
flow
modern
Field-Emission
scanning
electron
microscope
equipped
with
Thermofisher
Scientific
Maps
Mineralogy
system,
focusing
on
mud/siltstones
calcareous
shales.
We
demonstrate
SEM-EDS
implements
1)
strict
error
minimization
spectral
matching
approach
2)
to
produce
‘mixels’
for
X-ray
volumes
robustly
identify
grains
mineralogical
data
sets
comparable
conventional
diffraction
(XRD)
(
R
2
>
0.95).
The
correlation
between
XRD-derived
mineralogy
is
influenced
abundance,
processing
modes
mapped
area
characteristics.
Minerals
higher
abundance
(>10
wt%)
show
better
correlation,
likely
result
increased
uncertainty
XRD
quantification
low-abundance
phases.
Automated
greatly
reduces
proportion
unclassified
pixels,
especially
fraction,
ultimately
improving
identification
quantification.
Mapping
larger
areas
benefits
bulk
analysis,
while
customized
size
shape
allows
high-resolution
situ
analysis.
Finally,
review
applications
Sciences,
via
case
studies
illustrating
approaches
differentiation
various
components
detrital
(allogenic),
syndepositional
(authigenic)
burial
diagenetic
phases,
origin
significance
lamination,
3)
effectiveness
appropriateness
sequential
leaching
geochemical
studies,
4)
utility
maps
target
within
specific
contexts
or
geochronological
Earth-Science Reviews,
Journal Year:
2021,
Volume and Issue:
218, P. 103683 - 103683
Published: May 19, 2021
Understanding
the
origin
and
evolution
of
life
on
Earth
potentially
other
planets
in
our
solar
system
is
fundamental
interest
for
humanity.
For
longest
time
Earth's
history,
evolved
microbial
communities.
It
is,
however,
still
incompletely
understood
how,
when
where
such
habitable
environments
formed
how
communities
adopted
to
drastic
changes
atmosphere-hydrosphere-lithosphere
systems
through
deep
time.
Stromatolites,
i.e.,
lithified
mats
that
occur
sedimentary
successions
from
at
least
3.4
billion
years
ago
until
today,
hold
geochemical
key
understanding
may
also
provide
a
blueprint
planetary
studies.
This
review
targets
potential
pitfalls
emerging
established
isotope
applications
stromatolites
based
improved
newly
developed
analytical
technical
capabilities
last
decades.
We
comprehensive
overview
present
data
interpretation
radiogenic
(UPb,
RbSr,
SmNd)
stable
(O,
C-N-S,
Fe,
Mo,
Cr,
U,
Cd)
stromatolites.
Although
behaviour
fractionation
processes
different
are
understood,
proxies
used
better
understand
reconstruct
habitats
stromatolite-forming
Primarily,
isotopes
directly
date
determine
source
elements
ancient
stromatolite
environments,
while
redox
conditions,
metal
availability,
(biogenic)
cycling
habitats.
insights
into
each
application
show
their
unique
future
perspectives
bridge
gap
between
geochemistry
microbiology
beyond.
Global Biogeochemical Cycles,
Journal Year:
2022,
Volume and Issue:
36(6)
Published: May 23, 2022
Abstract
Processes
controlling
dissolved
barium
(dBa)
were
investigated
along
the
GEOTRACES
GA03
North
Atlantic
and
GP16
Eastern
Tropical
Pacific
transects,
which
traversed
similar
physical
biogeochemical
provinces.
Dissolved
Ba
concentrations
are
lowest
in
surface
waters
(∼35–50
nmol
kg
−1
)
increase
to
70–80
140–150
deep
of
respectively.
Using
water
mass
mixing
models,
we
estimate
conservative
that
accounts
for
most
dBa
variability
both
transects.
To
examine
nonconservative
processes,
particulate
excess
(pBa
xs
formation
dissolution
rates
tracked
by
normalizing
230
Th
activities.
Th‐normalized
pBa
fluxes,
with
barite
as
likely
phase,
have
subsurface
maxima
top
1,000
m
(∼100–200
μmol
−2
year
average)
basins.
Barite
precipitation
depletes
within
oxygen
minimum
zones
from
predicted
mixing,
whereas
inputs
continental
margins,
particle
column,
benthic
diffusive
flux
raise
above
predications.
Average
burial
efficiencies
∼37%
17%–100%,
respectively,
do
not
seem
be
predicated
on
saturation
indices
overlying
column.
published
values,
reevaluate
global
freshwater
river
input
6.6
±
3.9
Gmol
.
Estuarine
processes
may
add
another
3–13
broad
shallow
previously
unaccounted
marine
summaries,
substantial
(∼17
),
exceeding
terrestrial
inputs.
Revising
shelf
help
bring
isotope
budget
more
into
balance.
Chemical Geology,
Journal Year:
2024,
Volume and Issue:
654, P. 122058 - 122058
Published: March 25, 2024
Cadmium
(Cd)
isotope
signatures
(δ114Cd)
deduced
from
modern
and
ancient
marine
deposits
are
often
used
as
a
proxy
for
bioproductivity
micronutrient
cycling,
whereas
chromium
(Cr)
(δ53Cr)
potential
oxygenation.
The
Cretaceous—Paleogene
(K/Pg)
boundary
records
one
of
Earth's
five
big
mass
extinctions,
which
contains
geochemical
fingerprints
the
Chixculub
asteroid
impact
is
coeval
with
Deccan
Trap
volcanism.
Here
we
present
first
time
combined
record
Cd
Cr
isotopes
Danish
Basin
to
interrogate
effects
on
across
K/Pg
boundary.
δ114Cd
values
range
between
−0.28‰
0.27‰
defining
an
average
0.05‰
±
0.24
(2σ,
n
=
87).
Authigenic
δ53Cr
0.06‰
1.06‰
define
0.59‰
0.51
81).
An
abrupt
jump,
layer,
consistently
positively
fractionated
recorded
in
Late
Maastrichtian
white
chalks
towards
less
heterogeneous
Early
Danian
carbonates,
likely
indicates
decrease
surface
water
bioproductivity.
This
accompanied
by
redox
fluctuations
column
consequence
environmental
changes
either
related
event
and/or
volcanic
eruptions
this
Assuming
efficient
removal
through
consumption
adsorption
primary
producers,
or
incorporation
into
skeleton/shells
calcifiers,
using
fractionation
factor
reconstruct
conditions
during
Masstrichtian—Early
that
compatible
those
oceans,
varying
0.17
0.72‰.
Overall,
Cr-Cd
over
consistent
scenario
characterized
climate-induced
nutrient
availability
concomitant
responses
production
levels,
ultimately
proceeding
activities
influenced
ocean's
chemistry.
We
anticipate
our
results
point
further
studies
other
stratigraphic
sections
worldwide
reveal
extensive
Cd-Cr
its
corresponding
collapse
decreasing
ocean
Global Biogeochemical Cycles,
Journal Year:
2021,
Volume and Issue:
35(7)
Published: May 22, 2021
Abstract
Biological
productivity
in
the
ocean
directly
influences
partitioning
of
carbon
between
atmosphere
and
interior.
Through
this
cycle
feedback,
changing
has
long
been
hypothesized
as
a
key
pathway
for
modulating
past
atmospheric
dioxide
levels
hence
global
climate.
Because
phytoplankton
preferentially
assimilate
light
isotopes
major
nutrients
nitrate
silicic
acid,
stable
(C),
nitrogen
(N),
silicon
(Si)
seawater
marine
sediments
can
inform
on
nutrient
cycling,
by
extension
relationship
with
biological
Here,
we
compile
water
column
C,
N,
Si
from
GEOTRACES‐era
data
four
regions
to
review
geochemical
proxies
oceanic
cycling
based
isotopic
composition
sediments.
External
sources
sinks
well
internal
(including
assimilation,
particulate
matter
export,
regeneration)
are
discussed
likely
drivers
observed
isotope
distributions
ocean.
The
potential
measurements
sedimentary
archives
record
aspects
C
is
evaluated,
along
uncertainties
limitations
associated
each
proxy.
Constraints
during
late
Quaternary
glacial‐interglacial
cycles
over
Cenozoic
examined.
This
highlights
opportunities
future
research
using
multielement
proxy
applications
emphasizes
importance
such
reconstructing
changes
oceans
climate
system.