PLoS ONE,
Journal Year:
2019,
Volume and Issue:
14(7), P. e0219207 - e0219207
Published: July 24, 2019
The
distribution
and
diversity
of
RNA
viruses
in
fungi
is
incompletely
understood
due
to
the
often
cryptic
nature
mycoviral
infections
focused
study
primarily
pathogenic
and/or
economically
important
fungi.
As
most
that
are
known
infect
possess
either
single-stranded
or
double-stranded
genomes,
transcriptomic
data
provides
opportunity
query
for
diverse
fungal
samples
without
any
a
priori
knowledge
virus
infection.
Here
we
describe
systematic
survey
all
datasets
from
belonging
subphylum
Pezizomycotina.
Using
simple
but
effective
computational
pipeline
uses
reads
discarded
during
normal
RNA-seq
analyses,
followed
by
identification
viral
RNA-dependent
polymerase
(RdRP)
motif
de
novo
assembled
contigs,
59
44
different
were
identified.
Among
identified,
88%
determined
be
new
species
68%
are,
our
knowledge,
first
described
species.
Comprehensive
analyses
both
nucleotide
inferred
protein
sequences
characterize
phylogenetic
relationships
between
these
set
support
classification
up
four
families
two
genera.
Thus
results
provide
deeper
understanding
scope
while
also
increasing
hosts.
Further,
this
demonstrates
suitability
analyzing
facilitate
rapid
discovery
viruses.
Plants,
Journal Year:
2023,
Volume and Issue:
12(17), P. 3102 - 3102
Published: Aug. 29, 2023
Arbuscular
mycorrhizal
fungi
(AMF)
form
symbiotic
relationships
with
the
roots
of
nearly
all
land-dwelling
plants,
increasing
growth
and
productivity,
especially
during
abiotic
stress.
AMF
improves
plant
development
by
improving
nutrient
acquisition,
such
as
phosphorus,
water,
mineral
uptake.
tolerance
resilience
to
stressors
drought,
salt,
heavy
metal
toxicity.
These
benefits
come
from
arbuscular
interface,
which
lets
fungal
partners
exchange
nutrients,
signalling
molecules,
protective
chemical
compounds.
Plants'
antioxidant
defence
systems,
osmotic
adjustment,
hormone
regulation
are
also
affected
infestation.
responses
promote
performance,
photosynthetic
efficiency,
biomass
production
in
stress
conditions.
As
a
result
its
positive
effects
on
soil
structure,
cycling,
carbon
sequestration,
contributes
maintenance
resilient
ecosystems.
The
AMFs
ecological
stability
species-
environment-specific.
AMF's
growth-regulating,
productivity-enhancing
role
alleviation
under
is
reviewed.
More
research
needed
understand
molecular
mechanisms
that
drive
AMF-plant
interactions
their
stresses.
triggers
plants'
morphological,
physiological,
Water
development,
improved
symbiosis.
In
colonization
modulates
defense
mechanisms,
hormonal
regulation.
circumstances.
AMF-mediated
enhanced
essential
oils
(EOs),
superoxide
dismutase
(SOD),
peroxidase
(POD),
ascorbate
(APX),
hydrogen
peroxide
(H2O2),
malondialdehyde
(MDA),
phosphorus
(P).
Understanding
how
increases
adaptation
reduces
will
help
sustain
agriculture,
ecosystem
management,
climate
change
mitigation.
have
gained
prominence
agriculture
due
multifaceted
roles
promoting
health
productivity.
This
review
delves
into
influences
absorption,
challenging
environmental
We
further
explore
extent
bolsters
Scientific Reports,
Journal Year:
2018,
Volume and Issue:
8(1)
Published: April 16, 2018
Dark
septate
endophytes
(DSE)
are
a
form-group
of
root
endophytic
fungi
with
elusive
functions.
Here,
the
genomes
two
common
DSE
semiarid
areas,
Cadophora
sp.
and
Periconia
macrospinosa
were
sequenced
analyzed
another
32
ascomycetes
different
lifestyles.
(Helotiales)
P.
(Pleosporales)
have
70.46
Mb
54.99
22,766
18,750
gene
models,
respectively.
The
majority
DSE-specific
protein
clusters
lack
functional
annotation
no
similarity
to
characterized
proteins,
implying
that
they
evolved
unique
genetic
innovations.
Both
possess
an
expanded
number
carbohydrate
active
enzymes
(CAZymes),
including
plant
cell
wall
degrading
(PCWDEs).
Those
similar
in
three
other
DSE,
contributed
signal
for
separation
principal
component
analyses
CAZymes,
indicating
shared
genomic
traits
fungi.
Number
secreted
proteases
lipases,
aquaporins,
genes
linked
melanin
synthesis
also
relatively
high
our
In
spite
certain
similarities
between
we
observed
low
levels
convergence
their
family
evolution.
This
suggests
that,
despite
originating
from
same
habitat,
these
along
evolutionary
trajectories
display
considerable
differences
within
lifestyle.
PLoS Biology,
Journal Year:
2019,
Volume and Issue:
17(11), P. e3000534 - e3000534
Published: Nov. 13, 2019
Phosphate
starvation
response
(PSR)
in
nonmycorrhizal
plants
comprises
transcriptional
reprogramming
resulting
severe
physiological
changes
to
the
roots
and
shoots
repression
of
plant
immunity.
Thus,
plant-colonizing
microorganisms-the
microbiota-are
exposed
direct
influence
by
soil's
phosphorus
(P)
content
itself
as
well
indirect
effects
soil
P
on
microbial
niches
shaped
plant.
The
individual
contribution
these
factors
microbiota
assembly
remains
unknown.
To
disentangle
effects,
we
planted
PSR-deficient
Arabidopsis
mutants
a
long-term
managed
gradient
compared
composition
their
shoot
root
wild-type
across
different
concentrations.
PSR-deficiency
had
larger
effect
both
bacterial
fungal
plant-associated
than
concentrations
shoots.
dissect
plant-microbe
interactions
under
variable
conditions,
conducted
reconstitution
experiment.
Using
185-member
synthetic
community
(SynCom)
wide
concentration
an
agar
matrix,
demonstrated
shift
bacteria
from
neutral
or
positive
interaction
negative
one,
measured
rosette
size.
This
phenotypic
was
accompanied
composition:
genus
Burkholderia
specifically
enriched
tissue
starvation.
Through
drop-out
experiment,
that
absence
SynCom,
accumulated
higher
ortophosphate
(Pi)
levels
colonized
with
full
SynCom
but
only
Pi
conditions.
Therefore,
Pi-stressed
are
susceptible
colonization
latent
opportunistic
competitors
found
within
microbiome,
thus
exacerbating
plant's
PLoS ONE,
Journal Year:
2019,
Volume and Issue:
14(7), P. e0219207 - e0219207
Published: July 24, 2019
The
distribution
and
diversity
of
RNA
viruses
in
fungi
is
incompletely
understood
due
to
the
often
cryptic
nature
mycoviral
infections
focused
study
primarily
pathogenic
and/or
economically
important
fungi.
As
most
that
are
known
infect
possess
either
single-stranded
or
double-stranded
genomes,
transcriptomic
data
provides
opportunity
query
for
diverse
fungal
samples
without
any
a
priori
knowledge
virus
infection.
Here
we
describe
systematic
survey
all
datasets
from
belonging
subphylum
Pezizomycotina.
Using
simple
but
effective
computational
pipeline
uses
reads
discarded
during
normal
RNA-seq
analyses,
followed
by
identification
viral
RNA-dependent
polymerase
(RdRP)
motif
de
novo
assembled
contigs,
59
44
different
were
identified.
Among
identified,
88%
determined
be
new
species
68%
are,
our
knowledge,
first
described
species.
Comprehensive
analyses
both
nucleotide
inferred
protein
sequences
characterize
phylogenetic
relationships
between
these
set
support
classification
up
four
families
two
genera.
Thus
results
provide
deeper
understanding
scope
while
also
increasing
hosts.
Further,
this
demonstrates
suitability
analyzing
facilitate
rapid
discovery
viruses.