Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral‐associated microbes DOI Creative Commons
Megan J. Huggett, Amy Apprill

Environmental Microbiology Reports, Journal Year: 2018, Volume and Issue: 11(3), P. 372 - 385

Published: Aug. 10, 2018

Coral-associated microorganisms are thought to play a fundamental role in the health and ecology of corals, but understanding specific coral-microbial interactions lacking. In order create framework examine specificity, we integrated phylogenetically compared 21,100 SSU rRNA gene Sanger-produced sequences from bacteria archaea associated with corals previous studies, accompanying host, location publication metadata, produce Coral Microbiome Database. From this database, identified 39 described candidate phyla Bacteria two Archaea demonstrating that one most diverse animal microbiomes. Secondly, new phylogenetic resource shows certain indeed including evolutionary distinct hosts. Specifically, 2-37 putative monophyletic, coral-specific sequence clusters within bacterial genera greatest number coral species (Vibrio, Endozoicomonas Ruegeria) as well functionally relevant microbial taxa ("Candidatus Amoebophilus", "Candidatus Nitrosopumilus" under recognized cyanobacteria). This provides for more targeted studies their associates, which is timely given escalated need understand microbiome its adaptability changing ocean reef conditions.

Language: Английский

Metagenomic Approaches for Understanding New Concepts in Microbial Science DOI Creative Commons
Luana de Fátima Alves, Cauã Antunes Westmann, Gabriel Lencioni Lovate

et al.

International Journal of Genomics, Journal Year: 2018, Volume and Issue: 2018, P. 1 - 15

Published: Aug. 23, 2018

Over the past thirty years, since dawn of metagenomic studies, a completely new (micro) universe was revealed, with potential to have profound impacts on many aspects society. Remarkably, study human microbiome provided perspective myriad traits previously regarded as solely (epi-) genetically encoded, such disease susceptibility, immunological response, and social nutritional behaviors. In this context, metagenomics has established powerful framework for understanding intricate connections between societies microbial communities, ultimately allowing optimization both health productivity. Thus, we shifted from old concept microbes harmful organisms broader panorama, in which signal relationship humans is flexible directly dependent our own decisions practices. parallel, also been playing major role prospection “hidden” genetic features development biotechnological applications, through discovery novel genes, enzymes, pathways, bioactive molecules or improved biochemical functions. Therefore, review highlights milestones over last three decades metagenomics, providing insights into its potentialities current challenges.

Language: Английский

Citations

143
Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems DOI
Bettina Glasl, Nicole S. Webster, David G. Bourne

et al.

Marine Biology, Journal Year: 2017, Volume and Issue: 164(4)

Published: March 23, 2017

Language: Английский

Citations

141
Effect of ultra-processed diet on gut microbiota and thus its role in neurodegenerative diseases DOI
Edwin E. Martínez Leo, Maira Rubí Segura Campos

Nutrition, Journal Year: 2019, Volume and Issue: 71, P. 110609 - 110609

Published: Oct. 11, 2019

Language: Английский

Citations

140
Characterization of a sponge microbiome using an integrative genome-centric approach DOI Open Access
J Pamela Engelberts, Steven J. Robbins, Jasper M. de Goeij

et al.

The ISME Journal, Journal Year: 2020, Volume and Issue: 14(5), P. 1100 - 1110

Published: Jan. 28, 2020

Language: Английский

Citations

137
Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral‐associated microbes DOI Creative Commons
Megan J. Huggett, Amy Apprill

Environmental Microbiology Reports, Journal Year: 2018, Volume and Issue: 11(3), P. 372 - 385

Published: Aug. 10, 2018

Coral-associated microorganisms are thought to play a fundamental role in the health and ecology of corals, but understanding specific coral-microbial interactions lacking. In order create framework examine specificity, we integrated phylogenetically compared 21,100 SSU rRNA gene Sanger-produced sequences from bacteria archaea associated with corals previous studies, accompanying host, location publication metadata, produce Coral Microbiome Database. From this database, identified 39 described candidate phyla Bacteria two Archaea demonstrating that one most diverse animal microbiomes. Secondly, new phylogenetic resource shows certain indeed including evolutionary distinct hosts. Specifically, 2-37 putative monophyletic, coral-specific sequence clusters within bacterial genera greatest number coral species (Vibrio, Endozoicomonas Ruegeria) as well functionally relevant microbial taxa ("Candidatus Amoebophilus", "Candidatus Nitrosopumilus" under recognized cyanobacteria). This provides for more targeted studies their associates, which is timely given escalated need understand microbiome its adaptability changing ocean reef conditions.

Language: Английский

Citations

124