Cancer Discovery,
Journal Year:
2022,
Volume and Issue:
12(10), P. 2350 - 2371
Published: July 19, 2022
Intrahepatic
cholangiocarcinoma
(iCCA)
exhibits
extensive
intratumoral
heterogeneity
and
an
extremely
high
mortality
rate.
Here,
we
performed
whole-exome
sequencing,
RNA
T-cell
receptor
(TCR)
multiplexed
immunofluorescence
on
207
tumor
regions
from
45
patients
with
iCCA.
Over
half
of
iCCA
displayed
immune
infiltration,
were
classified
into
sparsely,
heterogeneously,
highly
infiltrated
subgroups
distinct
immunogenomic
characteristics.
Sparsely
tumors
active
copy-number
loss
clonal
neoantigens,
heterogeneous
infiltration
played
important
role
in
the
subclonal
evolution
across
subregions.
Highly
characterized
by
activation
a
similar
TCR
repertoire
subregions,
but
counteracted
exhaustion
pervasive
antigen
presentation
defects.
Notably,
FGFR2
mutations
fusions
correlated
low
mutation
burden
reduced
infiltration.
Our
work
delineated
dynamic
tumor-immune
interactions
developed
robust
classification
system
to
divide
evasion
groups
different
prognoses.
This
study
elucidates
impact
spatial
upon
reveals
mechanisms
microenvironments,
which
can
be
exploited
for
development
personalized
immunotherapy
strategies.
article
is
highlighted
In
Issue
feature,
p.
2221.
Annual Review of Immunology,
Journal Year:
2022,
Volume and Issue:
40(1), P. 45 - 74
Published: April 26, 2022
The
transformative
success
of
antibodies
targeting
the
PD-1
(programmed
death
1)/B7-H1
(B7
homolog
1)
pathway
(anti-PD
therapy)
has
revolutionized
cancer
treatment.
However,
only
a
fraction
patients
with
solid
tumors
and
some
hematopoietic
malignancies
respond
to
anti-PD
therapy,
reason
for
failure
in
other
is
less
known.
By
dissecting
mechanisms
underlying
this
resistance,
current
studies
reveal
that
tumor
microenvironment
major
location
resistance
occur.
Furthermore,
appear
be
highly
heterogeneous.
Here,
we
discuss
recent
human
data
identifying
therapy.
We
review
evidence
immune-based
such
as
loss
neoantigens,
defects
antigen
presentation
interferon
signaling,
immune
inhibitory
molecules,
exclusion
T
cells.
also
clinical
emerging
alterations
metabolism,
microbiota,
epigenetics.
Finally,
strategies
overcome
therapy
emphasize
need
develop
additional
immunotherapies
based
on
concept
normalization
immunotherapy.
Proceedings of the National Academy of Sciences,
Journal Year:
2021,
Volume and Issue:
118(24)
Published: June 7, 2021
Significance
Renal
cell
carcinomas
(RCCs)
are
heterogeneous
malignancies
thought
to
arise
from
kidney
tubular
epithelial
cells,
and
clear
RCC
is
the
most
common
entity.
This
study
demonstrates
that
atlases
generated
benign
two
RCCs
using
single-cell
RNA
sequencing
can
predict
putative
cells
of
origin
for
more
than
10
subtypes.
A
focused
analysis
distinct
cell-type
compartments
reveals
potential
role
tumor
epithelia
in
promoting
immune
infiltration
other
molecular
attributes
microenvironment.
Finally,
an
observed
association
between
lack
immunotherapy
response
endothelial
fraction
has
important
clinical
implications.
The
current
study,
therefore,
significantly
contributes
toward
understanding
disease
ontogenies
dynamics
Clinical Cancer Research,
Journal Year:
2021,
Volume and Issue:
27(9), P. 2636 - 2647
Published: Feb. 23, 2021
Cancer-associated
fibroblasts
(CAFs)
are
an
important
component
of
the
tumor
microenvironment,
but
a
systematic
investigation
their
molecular
characteristics
and
clinical
relevance
lacking.
Here,
we
sought
to
compare
CAFs
across
multiple
cancer
types
identify
critical
pathways
activated
in
CAF
subtypes,
which
may
contribute
outcome,
disease
progression,
immunotherapy
resistance.We
performed
integrated
analysis
from
melanoma,
head
neck
squamous
cell
carcinoma,
lung
cancer,
identified
that
distinctly
active
each
subtype.
Gene
signatures
for
individual
subtypes
were
used
study
association
subtype
abundance
with
outcome
six
(pan-CAF)
shared
uncovered
genetic
distinguishing
them.
Interestingly,
these
express
distinct
immunosuppressive
factors,
such
as
CXCL12
CXLC14,
stem
cell-promoting
factor
IL6.
In
addition,
novel
transcriptional
drivers
(MEF2C,
TWIST1,
NR1H3,
RELB,
FOXM1)
key
heterogeneity.
Furthermore,
showed
associated
different
outcomes
could
activate
or
suppress
progression
involved
resistance
anti-PD1
anti-PD-L1
immunotherapy.Our
identifies
several
types,
implicates
benefit
targeted
therapies,
specific
resistance.
Cancer Immunology Research,
Journal Year:
2019,
Volume and Issue:
8(1), P. 146 - 154
Published: Nov. 12, 2019
Abstract
T-cell
receptor
(TCR)–based
biomarkers
might
predict
patient
response
to
immune
checkpoint
blockade
(ICB)
but
need
further
exploration
and
validation
for
that
use.
We
sequenced
complementarity-determining
region
3
of
TCRβ
chains
isolated
from
PD-1+
CD8+
T
cells
investigate
its
value
predicting
the
anti–programmed
cell
death
1
(PD-1)/PD-ligand
(PD-L1)
therapy
in
patients
with
non–small
lung
cancer
(NSCLC).
Two
independent
cohorts
(cohort
A,
n
=
25;
cohort
B,
15)
were
used
as
discovery
sets,
respectively.
Pre-
post-ICB
peripheral
blood
samples
collected.
In
high
TCR
diversity
before
ICB
treatment
showed
better
progression-free
survival
(PFS)
compared
low
[6.4
months
vs.
2.5
months,
HR,
0.39;
95%
confidence
interval
(CI),
0.17–0.94;
P
0.021].
The
results
validated
B.
Pre-ICB
achieved
an
optimal
Youden's
index
0.81
(sensitivity
0.87
specificity
0.94)
differentiating
merged
dataset
A
plus
B).
Patients
increased
clonality
after
had
longer
PFS
(7.3
2.6
0.26;
CI,
0.08–0.86;
0.002)
than
those
decreased
clonality.
Thus,
may
serve
noninvasive
predictors
outcomes
NSCLC.
JAMA Network Open,
Journal Year:
2019,
Volume and Issue:
2(7), P. e196879 - e196879
Published: July 10, 2019
Importance
The
beneficial
role
of
immunotherapy
and
the
clinical
relevance
current
biomarkers
in
non–small
cell
lung
cancer
(NSCLC)
remain
inconclusive;
thus,
appropriate
strategies
reliable
predictors
need
further
definition.
Objectives
To
evaluate
association
outcomes
with
immune
checkpoint
inhibitors,
tumor
vaccines,
cellular
patients
advanced
NSCLC
to
explore
strategies,
candidates,
predictors.
Data
Sources
PubMed,
EMBASE,
Cochrane
Central
Register
Controlled
Trials
databases
were
searched
from
inception
June
2018,
using
relevant
search
keywords
Medical
Subject
Headings
(MeSH)
terms,
includingtumor
vaccine,cellular
immunotherapy,immune
inhibitor,cytotoxic
T-lymphocyte-associated
protein
4,programmed
death-ligand
1,programmed
death
receptor
1,
andnon-small
carcinoma.
Systematic
reviews,
meta-analyses,
references,
conference
proceedings
manually
searched.
Study
Selection
English-language
randomized
trials
available
data
that
measured
overall
survival
(OS),
progression-free
(PFS),
or
objective
response
rate
comparing
conventional
therapy
for
metastatic
included.
Thirty-one
included,
multicohort
included
next-generation
sequencing
NCSLC.
Extraction
Synthesis
Hazard
ratios
95%
CIs
pooled
estimate
increases
OS
PFS.
Dichotomous
data,
such
as
object
analyzed
risk
ratio.
Mantel-Haenszel
random-effects
model
was
used.I2was
used
assess
heterogeneity
between
trials;
anI2value
exceeding
50%
indicated
existence
substantial
heterogeneity.
Analyses
took
place
February
1,
August
31,
2018.
Theranostics,
Journal Year:
2020,
Volume and Issue:
11(5), P. 2201 - 2217
Published: Dec. 16, 2020
Recent
studies
have
highlighted
the
biological
significance
of
RNA
N6-methyladenosine
(m6A)
modification
in
tumorigenicity
and
progression.
However,
it
remains
unclear
whether
m6A
modifications
also
potential
roles
immune
regulation
tumor
microenvironment
(TME)
formation.
Methods:
In
this
study,
we
curated
23
regulators
performed
consensus
molecular
subtyping
with
NMF
algorithm
to
determine
patterns
m6A-related
gene
signature
colon
cancer
(CC).
The
ssGSEA
CIBERSORT
algorithms
were
employed
quantify
relative
infiltration
levels
various
cell
subsets.
An
PCA
based
m6Sig
scoring
scheme
was
used
evaluate
individual
tumors
an
response.
Results:
Three
distinct
identified
among
1307
CC
samples,
which
associated
different
clinical
outcomes
pathways.
TME
characterization
revealed
that
highly
consistent
three
known
profiles:
immune-inflamed,
immune-excluded,
immune-desert,
respectively.
Based
on
score,
extracted
from
genes,
patients
can
be
divided
into
high
low
score
subgroups.
Patients
lower
characterized
by
prolonged
survival
time
enhanced
infiltration.
Further
analysis
indicated
correlated
greater
mutation
loads,
PD-L1
expression,
higher
rates
SMGs
(e.g.,
PIK3CA
SMAD4).
addition,
scores
showed
a
better
responses
durable
benefits
independent
immunotherapy
cohorts.
Conclusions:
This
study
highlights
is
significantly
diversity
complexity.
Quantitatively
evaluating
will
strengthen
our
understanding
characteristics
promote
more
effective
strategies.
Advanced Science,
Journal Year:
2022,
Volume and Issue:
9(9)
Published: Jan. 17, 2022
Tumor-associated
macrophages
(TAMs)
are
one
of
the
most
abundant
cell
types
in
colorectal
cancer
(CRC)
tumor
microenvironment
(TME).
Recent
studies
observed
complicated
"cross-talks"
between
cells
and
TME.
However,
underlying
mechanisms
still
poorly
elucidated.
Here,
PD-L1
levels
very
low
CRC
but
highly
TAMs,
a
specific
PD-L1+
CD206+
macrophage
subpopulation
identified,
which
is
induced
by
associated
with
poor
prognosis.
Mechanistic
investigations
reveal
that
can
secrete
small
extracellular
vesicles
(sEVs)
taken
up
induce
M2
like
polarization
expression,
resulting
increased
abundance
decreased
T
activity
sEV-derived
miR-21-5p
miR-200a
identified
as
key
signaling
molecules
mediating
regulatory
effects
on
macrophages.
Further
CRC-derived
synergistically
induces
expression
regulating
PTEN/AKT
SCOS1/STAT1
pathways,
CD8+
growth.
This
study
suggests
inhibiting
secretion
sEV-miRNAs
from
targeting
TAMs
may
serve
novel
methods
for
treatment
well
sensitization
method
anti-PD-L1
therapy
CRC.
Experimental Hematology and Oncology,
Journal Year:
2022,
Volume and Issue:
11(1)
Published: April 23, 2022
During
the
course
of
tumorigenesis
and
subsequent
metastasis,
malignant
cells
gradually
diversify
become
more
heterogeneous.
Consequently,
tumor
mass
might
be
infiltrated
by
diverse
immune-related
components,
including
cytokine/chemokine
environment,
cytotoxic
activity,
or
immunosuppressive
elements.
This
immunological
heterogeneity
is
universally
presented
spatially
varies
temporally
along
with
evolution
therapeutic
intervention
across
almost
all
solid
tumors.
The
anti-tumor
immunity
shows
a
profound
association
progression
disease
responsiveness
to
treatment,
particularly
in
realm
immunotherapy.
Therefore,
an
accurate
understanding
essential
for
development
effective
therapies.
Facilitated
multi-regional
-omics
sequencing,
single
cell
longitudinal
liquid
biopsy
approaches,
recent
studies
have
demonstrated
potential
investigate
complexity
tumors
its
clinical
relevance
Here,
we
aimed
review
mechanism
underlying
immune
microenvironment.
We
also
explored
how
assessments
facilitate
personalized