Super pangenome of Vitis empowers identification of downy mildew resistance genes for grapevine improvement DOI
Li Guo, Xiangfeng Wang, Dilay Hazal Ayhan

et al.

Nature Genetics, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 26, 2025

Language: Английский

Durian (Durio zibethinus L.): Nutritional Composition, Pharmacological Implications, Value-Added Products, and Omics-Based Investigations DOI Creative Commons
Gholamreza Khaksar, Sudarat Kasemcholathan, Supaart Sirikantaramas

et al.

Horticulturae, Journal Year: 2024, Volume and Issue: 10(4), P. 342 - 342

Published: March 29, 2024

Durian (Durio zibethinus L.), a tropical fruit celebrated in Southeast Asia for its distinct flavor, is the focus of this comprehensive review. The fruit’s pulp rich high-value bioactive compounds, including gamma-glutamylcysteine, precursor to essential antioxidant glutathione. With durian cultivation gaining prominence due economic potential through cultivar enhancement, an in-depth examination durian-related research becomes crucial. This review explores health benefits durian, analyzing nutritional compositions and compounds present pulp, peel, seed. It also underscores durian-based food products valorizing waste. encapsulates significant advancements made omics-based research, aimed at deciphering molecular complexities post-harvest ripening metabolic shifts impacting sensory attributes. first summarize studies across genome, transcriptome, metabolome levels. Future should prioritize development markers accelerate breeding elite cultivars with preferred traits. proposes exploration waste valorization, underexplored parts like flowers leaves their promote sustainable bioeconomy. Finally, it suggests innovative catering tastes health-conscious consumers.

Language: Английский

Citations

13

Population genomics highlights structural variations in local adaptation to saline coastal environments in woolly grape DOI Creative Commons
Tianhao Zhang,

Wenjing Peng,

Hua Xiao

et al.

Journal of Integrative Plant Biology, Journal Year: 2024, Volume and Issue: 66(7), P. 1408 - 1426

Published: April 5, 2024

ABSTRACT Structural variations (SVs) are a feature of plant genomes that has been largely unexplored despite their significant impact on phenotypic traits and local adaptation to abiotic biotic stress. In this study, we employed woolly grape ( Vitis retordii ), species native the tropical subtropical regions East Asia with both coastal inland habitats, as valuable model for examining SVs adaptation. We assembled haplotype‐resolved chromosomal reference genome grape, conducted population genetic analyses based whole‐genome sequencing (WGS) data from populations. The demographic revealed recent bottlenecks in all populations asymmetric gene flow population. total, 1,035 genes associated adaptive regulation salt stress, radiation, environmental were detected underlying selection by SNPs population, which 37.29% 65.26% SNPs, respectively. Candidate such FSD2 , RGA1 AAP8 tolerance found be highly differentiated selected during process habitats SV regions. Our study highlights importance adaptation; candidate related stress climatic environments important genomic resources future breeding programs grapevine its rootstocks.

Language: Английский

Citations

12

Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits DOI Creative Commons
Xuemei Lu,

Xiao-fen Yu,

Guoqiang Li

et al.

Plant Communications, Journal Year: 2024, Volume and Issue: unknown, P. 100856 - 100856

Published: March 1, 2024

Actinidia arguta, the most widely distributed and second cultivated species within genus, has distinguished difference from current kiwifruit in biological characters like small smooth fruit, rapid-softening excellent cold tolerance. Knowledge of adaptive evolution tetraploid genetic basis its important agronomic traits is still unclear. A chromosome-scale genome assembly an autotetraploid male A. arguta been generated. The was 2.77 Gb length with a contig N50 9.97Mb anchored into 116 pseudo-chromosomes. Resequencing clustering 101 geographically representative accessions showed they could be divided two geographical groups, Southern Northern Groups, which first diverged 12.9 Mya ago. underwent prominent expansions one demographic bottleneck mid-Pleistocene climate transition (MPT) to late-Pleistocene. Population genomics study using paleoclimate data allow us discern adaptation different historical environments. Three genes (AaCEL1, AaPME1 AaDOF1) have identified by multi-omics verified their accelerating softening flesh through transient assay. set localized sex chromosome (Chr3), or autosomal chromosomes are biasedly expressed during stamen carpel development, characteristically regulate sexual dimorphism. This at level detail uncover related paves way facilitate functional improvement arguta.

Language: Английский

Citations

9

Population sequencing of cherry accessions unravels the evolution of Cerasus species and the selection of genetic characteristics in edible cherries DOI Creative Commons

Yahui Lei,

Songtao Jiu, Yan Xu

et al.

Molecular Horticulture, Journal Year: 2025, Volume and Issue: 5(1)

Published: Jan. 8, 2025

Abstract Cerasus is a subgenus of Prunus in the family Rosaceae that popular owing to its ornamental, edible, and medicinal properties. Understanding evolution identifying selective trait loci edible cherries are crucial for improvement cherry cultivars meet producer consumer demands. In this study, we performed de novo assembly chromosome-scale genome sweet ( avium L . ) cultivar ‘Burlat’, covering 297.55 Mb consisting eight chromosomes with 33,756 protein-coding genes. The resequencing population structural analysis 384 representative accessions revealed they could be divided into four groups (Group 1, Group 2, 3, 4). We inferred 1 was oldest Groups 4 were clades derived from it. addition, found sweeps fruit flavor improved stress resistance different varieties P. , cerasus pseudocerasus Transcriptome significant differential expression genes associated key pathways, such as sucrose starch metabolism, fructose mannose pentose phosphate pathway, between leaves fruits This study enhances understanding evolutionary processes provides resources functional genomics research cherries.

Language: Английский

Citations

1

Super pangenome of Vitis empowers identification of downy mildew resistance genes for grapevine improvement DOI
Li Guo, Xiangfeng Wang, Dilay Hazal Ayhan

et al.

Nature Genetics, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 26, 2025

Language: Английский

Citations

1