Tissue optical clearing and expanding solution for improved nuclear segmentation DOI Creative Commons
Paweł Matryba, Artur Wolny,

Anna Chwastowicz

et al.

View, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 21, 2025

Abstract Over the recent years, fluorescence microscopy has seen substantial progress, transitioning from primarily qualitative analysis to a profoundly quantitative methodology, yet limitations in imaging depth and data quality persist due tissue opacity. Tissue optical clearing (TOC) methodologies were implemented overcome this hurdle, enabling of large samples such as entire murine organs. Further improvements, including expansion merge TOC benefits with improved resolution, converting cells tissues into tissue‒gel hybrids. Yet, its intricate protocols lead remarkable, ∼10‒20× volume expansion, making acquisition even thin sections exceedingly challenging terms time, labor, handling. Here, we present novel solution, Improved Segmentation by gEntle Expansion (ISEE), for both gentle (1.6‒1.7×) significantly precision fluorescent signal segmentation, while maintaining tolerable increase during everyday laboratory practice. When applied thick ∼40‒200 µm slices, ISEE renders them transparent ultimately expanded within minutes, simple, one‐step process compatible immunohistochemistry well all major

Language: Английский

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues DOI
Adam K. Glaser, Kevin W. Bishop, Lindsey A. Barner

et al.

Nature Methods, Journal Year: 2022, Volume and Issue: 19(5), P. 613 - 619

Published: May 1, 2022

Language: Английский

Citations

114

Recent Advances in the Modeling of Alzheimer’s Disease DOI Creative Commons
Hiroki Sasaguri, Shoko Hashimoto, Naoto Watamura

et al.

Frontiers in Neuroscience, Journal Year: 2022, Volume and Issue: 16

Published: March 31, 2022

Since 1995, more than 100 transgenic (Tg) mouse models of Alzheimer's disease (AD) have been generated in which mutant amyloid precursor protein (APP) or APP/presenilin 1 (PS1) cDNA is overexpressed (

Language: Английский

Citations

111

Tissue clearing DOI
Douglas S. Richardson, Webster Guan, Katsuhiko Matsumoto

et al.

Nature Reviews Methods Primers, Journal Year: 2021, Volume and Issue: 1(1)

Published: Dec. 16, 2021

Language: Английский

Citations

109

CODA: quantitative 3D reconstruction of large tissues at cellular resolution DOI
Ashley Kiemen, Alicia M. Braxton, Mia P. Grahn

et al.

Nature Methods, Journal Year: 2022, Volume and Issue: 19(11), P. 1490 - 1499

Published: Oct. 24, 2022

Language: Английский

Citations

100

Whole-body cellular mapping in mouse using standard IgG antibodies DOI Creative Commons
Hongcheng Mai, Jie Luo,

Luciano Hoeher

et al.

Nature Biotechnology, Journal Year: 2023, Volume and Issue: 42(4), P. 617 - 627

Published: July 10, 2023

Abstract Whole-body imaging techniques play a vital role in exploring the interplay of physiological systems maintaining health and driving disease. We introduce wildDISCO, new approach for whole-body immunolabeling, optical clearing mice, circumventing need transgenic reporter animals or nanobody labeling so overcoming existing technical limitations. identified heptakis(2,6-di- O -methyl)-β-cyclodextrin as potent enhancer cholesterol extraction membrane permeabilization, enabling deep, homogeneous penetration standard antibodies without aggregation. WildDISCO facilitates peripheral nervous systems, lymphatic vessels immune cells whole mice at cellular resolution by diverse endogenous proteins. Additionally, we examined rare proliferating effects biological perturbations, demonstrated germ-free mice. applied wildDISCO to map tertiary lymphoid structures context breast cancer, considering both primary tumor metastases throughout mouse body. An atlas high-resolution images showcasing nervous, vascular is accessible http://discotechnologies.org/wildDISCO/atlas/index.php .

Language: Английский

Citations

71

Alveolar fibroblast lineage orchestrates lung inflammation and fibrosis DOI
Tatsuya Tsukui, Paul J. Wolters, Dean Sheppard

et al.

Nature, Journal Year: 2024, Volume and Issue: 631(8021), P. 627 - 634

Published: July 10, 2024

Language: Английский

Citations

45

Human assembloids reveal the consequences of CACNA1G gene variants in the thalamocortical pathway DOI
Ji‐il Kim, Yuki Miura, Min-Yin Li

et al.

Neuron, Journal Year: 2024, Volume and Issue: unknown

Published: Oct. 1, 2024

Language: Английский

Citations

18

Bioorthogonal chemical labeling of endogenous neurotransmitter receptors in living mouse brains DOI Creative Commons
Hiroshi Nonaka, Seiji Sakamoto,

Kazuki Shiraiwa

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2024, Volume and Issue: 121(6)

Published: Jan. 31, 2024

Neurotransmitter receptors are essential components of synapses for communication between neurons in the brain. Because spatiotemporal expression profiles and dynamics neurotransmitter involved many functions delicately governed brain, vivo research tools with high resolution intact brains highly desirable. Covalent labeling by chemical reaction (chemical labeling) proteins without genetic manipulation is now a powerful method analyzing vitro. However, selective target receptor brain has not yet been achieved. This study shows that ligand-directed alkoxyacylimidazole (LDAI) chemistry can be used to selectively tether synthetic probes endogenous living mouse brains. The reactive LDAI reagents negative charges were found diffuse well over whole could label receptors, including AMPAR, NMDAR, mGlu1, GABA A R. simple robust protocol was then various applications: three-dimensional spatial mapping healthy disease-model mice; multi-color imaging; pulse–chase analysis postnatal Here, results demonstrated bioorthogonal modification animal may provide innovative molecular contribute in-depth understanding complicated functions.

Language: Английский

Citations

17

Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning DOI Creative Commons
Jie Luo, Müge Molbay, Ying Chen

et al.

Nature Biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 14, 2025

Efficient and accurate nanocarrier development for targeted drug delivery is hindered by a lack of methods to analyze its cell-level biodistribution across whole organisms. Here we present Single Cell Precision Nanocarrier Identification (SCP-Nano), an integrated experimental deep learning pipeline comprehensively quantify the targeting nanocarriers throughout mouse body at single-cell resolution. SCP-Nano reveals tissue distribution patterns lipid nanoparticles (LNPs) after different injection routes doses as low 0.0005 mg kg-1-far below detection limits conventional imaging techniques. We demonstrate that intramuscularly injected LNPs carrying SARS-CoV-2 spike mRNA reach heart tissue, leading proteome changes, suggesting immune activation blood vessel damage. generalizes various types nanocarriers, including liposomes, polyplexes, DNA origami adeno-associated viruses (AAVs), revealing AAV2 variant transduces adipocytes body. enables comprehensive three-dimensional mapping bodies with high sensitivity should accelerate precise safe nanocarrier-based therapeutics.

Language: Английский

Citations

2

Uniform volumetric single-cell processing for organ-scale molecular phenotyping DOI
Dae Hee Yun,

Young-Gyun Park,

Jaehun Cho

et al.

Nature Biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 24, 2025

Language: Английский

Citations

2