Turning Garlic into a Modern Crop: State of the Art and Perspectives

Plants, Journal Year: 2023, Volume and Issue: 12(6), P. 1212 - 1212

Published: March 7, 2023

Garlic is cultivated worldwide for the value of its bulbs, but cultivation challenged by infertility commercial cultivars and accumulation pathogens over time, which occurs as a consequence vegetative (clonal) propagation. In this review, we summarize state art garlic genetics genomics, highlighting recent developments that will lead to development modern crop, including restoration sexual reproduction in some strains. The set tools available breeder currently includes chromosome-scale assembly genome multiple transcriptome assemblies are furthering our understanding molecular processes underlying important traits like infertility, induction flowering bulbing, organoleptic properties resistance various pathogens.

Language: Английский

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Green Onion (Allium fistulosum): An Aromatic Vegetable Crop Esteemed for Food, Nutritional and Therapeutic Significance

Foods, Journal Year: 2023, Volume and Issue: 12(24), P. 4503 - 4503

Published: Dec. 16, 2023

In recent years, there has been a shift towards greater demand for more nutritious and healthier foods, emphasizing the role of diets in human well-being. Edible Alliums, including common onions, garlic, chives green are staples diverse cuisines worldwide valued specifically their culinary versatility, distinct flavors nutritional medicinal properties. Green onions widely cultivated traded as spicy vegetable. The mild, onion-like flavor makes crop pleasant addition to various dishes, serving staple ingredient many world cuisines, particularly Eastern Asian countries such China, Japan Republic Korea. pseudostems, leaves non-developed bulbs utilized salads, stir-fries, garnishes myriad preparations. Additionally, have rich historical background traditional medicine diets, capturing attention chefs general public. status an important food, its diversity nutraceutical therapeutic value make it subject great interest research. Therefore, present review examined distribution, culinary, significance highlighting health benefits derived from consumption with this aromatic vegetable constituent.

Language: Английский

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Apostasia Mitochondrial Genome Analysis and Monocot Mitochondria Phylogenomics

International Journal of Molecular Sciences, Journal Year: 2023, Volume and Issue: 24(9), P. 7837 - 7837

Published: April 25, 2023

Apostasia shenzhenica belongs to the subfamily Apostasioideae and is a primitive group located at base of Orchidaceae phylogenetic tree. However, A. mitochondrial genome (mitogenome) still unexplored, relationships between monocots mitogenomes remain unexplored. In this study, we discussed genetic diversity within its monocotyledon mitogenome. We sequenced assembled complete mitogenome shenzhenica, resulting in circular draft 672,872 bp, with an average read coverage 122× GC content 44.4%. contained 36 protein-coding genes, 16 tRNAs, two rRNAs, copies nad4L. Repeat sequence analysis revealed large number medium small repeats, accounting for 1.28% sequence. Selection pressure indicated high conservation related species. RNA editing identified 416 sites region. Furthermore, found 44 chloroplast genomic DNA fragments that were transferred from five plastid-derived genes remaining intact Finally, 28 other showed evolution classification most well determined. These findings enrich resources orchids provide valuable information on taxonomic molecular monocots.

Language: Английский

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Chromosome-level genomes of three key Allium crops and their trait evolution

Nature Genetics, Journal Year: 2023, Volume and Issue: 55(11), P. 1976 - 1986

Published: Nov. 1, 2023

Language: Английский

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Unraveling the specialized metabolic pathways in medicinal plant genomes: a review

Frontiers in Plant Science, Journal Year: 2024, Volume and Issue: 15

Published: Dec. 24, 2024

Medicinal plants are important sources of bioactive specialized metabolites with significant therapeutic potential. Advances in multi-omics have accelerated the understanding metabolite biosynthesis and regulation. Genomics, transcriptomics, proteomics, metabolomics each contributed new insights into biosynthetic gene clusters (BGCs), metabolic pathways, stress responses. However, single-omics approaches often fail to fully address these complex processes. Integrated provides a holistic perspective on key regulatory networks. High-throughput sequencing emerging technologies like single-cell spatial omics deepened our cell-specific spatially resolved dynamics. Despite advancements, challenges remain managing large datasets, standardizing protocols, accounting for dynamic nature metabolism, effectively applying synthetic biology sustainable production. This review highlights recent progress omics-based research medicinal plants, discusses available bioinformatics tools, explores future trends aimed at leveraging integrated improve quality utilization plant resources.

Language: Английский

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Chromosome-level genome assembly and improved annotation of onion genome (Allium cepa L.)

Scientific Data, Journal Year: 2025, Volume and Issue: 12(1)

Published: Feb. 26, 2025

Onion (Allium cepa L.) is an economically valuable crop, but its large, repeat-enriched genome makes assembly difficult and limits molecular breeding biological studies. Herein, we present a chromosomal-level reference of the double-haploid onion line DHW30006, constructed by combining PacBio, Illumina, Hi-C sequencing approaches. The assembled totaled 12.77 Gb, with 65,730 gene models, was anchored to eight pseudo-chromosomes covering 12.07 Gb (94.5%), scaffold N50 1.40 Gb. DHW30006 contained improved models approximately 580 Mb (4.54%) genic regions average length 8,827 bp 5.48 exons per gene. These represented most annotation among Allium genomes. This will serve as resource for research in plants.

Language: Английский

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Identification of a gene coding for a pentatricopeptide repeat protein as a candidate responsible for the Ms2, a novel restorer-of-fertility locus in onion (Allium cepa L.)

Molecular Breeding, Journal Year: 2025, Volume and Issue: 45(4)

Published: April 1, 2025

Language: Английский

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Conservation and Global Distribution of Onion (Allium cepa L.) Germplasm for Agricultural Sustainability

Plants, Journal Year: 2023, Volume and Issue: 12(18), P. 3294 - 3294

Published: Sept. 18, 2023

Onion (Allium cepa L.) is recognized globally as a crucial vegetable crop, prized not only for its culinary applications but also numerous health-promoting properties. With climate change relentlessly exerting mounting challenges to agriculture, the preservation and deployment of onion germplasm has become critical ensuring sustainable agriculture safeguarding food security. Global collections function repositories genetic diversity, holding within them an extensive array valuable traits or genes. These can be harnessed develop varieties resilient adversities. Therefore, detailed information concerning from various geographical regions bolster their utility. Furthermore, amplified understanding importance fostering international inter-institutional collaborations becomes essential. Sharing making use resources provide viable solutions looming agricultural future. In this review, we have discussed worldwide distribution germplasm, along with implications sustainability. We underscored interinstitutional collaboration in collecting conservation

Language: Английский

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Identification and validation of reference genes for qRT-PCR analyses under different experimental conditions in Allium wallichii

Journal of Plant Physiology, Journal Year: 2023, Volume and Issue: 281, P. 153925 - 153925

Published: Jan. 14, 2023

Language: Английский

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AlliumDB: a central portal for comparative and functional genomics in Allium

Horticulture Research, Journal Year: 2023, Volume and Issue: 11(2)

Published: Dec. 29, 2023

The genus

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