bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 17, 2023
ABSTRACT
Mobile
genetic
elements
(MGEs)
like
plasmids,
viruses,
and
transposable
can
provide
fitness
benefits
to
their
hosts
for
survival
in
the
presence
of
environmental
stressors.
Heavy
metal
resistance
genes
(HMRGs)
are
frequently
observed
on
MGEs,
suggesting
that
MGEs
may
be
an
important
driver
adaptive
evolution
environments
contaminated
with
heavy
metals.
Here,
we
report
meta-mobilome
regions
Oak
Ridge
Reservation
(ORR)
subsurface.
This
was
compared
one
derived
from
samples
collected
unimpacted
ORR
We
assembled
1,615
unique
circularized
DNA
propose
MGEs.
The
circular
highly
subsurface
were
enriched
HMRG
clusters
relative
those
nearby
regions.
Additionally,
found
these
HMRGs
associated
Gamma
Betaproteobacteria
potentially
facilitate
persistence
dominance
taxa
this
region.
Finally,
conjugative
elements,
potential
future
lateral
transfer.
demonstrate
how
our
understanding
MGE
ecology,
evolution,
function
enhanced
through
genomic
context
provided
by
completed
assemblies.
Microbiology Spectrum,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 9, 2025
ABSTRACT
Klebsiella
pneumoniae
is
widely
recognized
as
a
pathogen
responsible
for
hospital-acquired
infections
and
community-acquired
invasive
infections.
It
has
rapidly
become
significant
global
public
health
threat
due
to
the
emergence
of
hypervirulent
multidrug-resistant
strains,
which
have
increased
challenges
associated
with
treating
life-threatening
Tellurium
resistance
genes
are
widespread
on
virulence
plasmids
in
K.
isolates.
However,
core
function
ter
operon
(
terZABCDEF
)
remains
unclear.
In
this
study,
P1927
strain
was
isolated
from
sputum
hospitalized
pneumonia
patient.
The
operon,
along
antimicrobial
genes,
identified
large
hybrid
plasmid
P1927.
We
generated
terC
deletion
mutant
demonstrated
that
exhibited
reduced
Galleria
mellonella
larva
infection
model.
Further
physiological
functional
analysis
revealed
not
only
important
Te(IV)
but
also
Zn(II),
Mn(II),
phage
infection.
All
were
highly
inducible
by
stronger
inducer
than
Te(IV),
terBCDE
induced
Mn(II).
Collectively,
our
study
demonstrates
novel
functions
TerC
Zn(II)
.
IMPORTANCE
health.
Although
clinical
isolates,
its
been
proposed
proteins
encoded
form
multi-site
metal-binding
complex,
exact
still
unknown.
TerC,
central
component
tellurium
determinant,
previously
shown
interact
outer
membrane
OmpA
KpsD
Escherichia
coli
,
suggesting
potential
changes
structure
properties.
Here,
we
report
confers
infection,
be
strong
operon.
Furthermore,
factor.
Taken
together,
results
expand
understanding
role
providing
deeper
insights
into
link
between
heavy
metal(loid)
determinants
pathogenic
bacteria.
Journal of Bacteriology,
Journal Year:
2024,
Volume and Issue:
206(7)
Published: June 13, 2024
Cells
use
transition
metal
ions
as
structural
components
of
biomolecules
and
cofactors
in
enzymatic
reactions,
making
integral
cellular
components.
Organisms
optimize
ion
concentration
to
meet
needs
by
regulating
the
expression
proteins
that
import
export
ion,
often
a
concentration-dependent
manner.
One
such
regulation
mechanism
is
via
riboswitches,
which
are
5'-untranslated
regions
an
mRNA
undergo
conformational
changes
promote
or
inhibit
downstream
gene,
commonly
response
ligand.
The
Biochemistry,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 5, 2025
Metal
ions
are
essential
for
all
life.
In
microbial
cells,
potassium
(K+)
is
the
most
abundant
cation
and
plays
a
key
role
in
maintaining
osmotic
balance.
Magnesium
(Mg2+)
dominant
divalent
required
nucleic
acid
structure
as
an
enzyme
cofactor.
Microbes
typically
require
transition
metals
manganese
(Mn),
iron
(Fe),
copper
(Cu),
zinc
(Zn),
although
precise
set
of
metal
needed
to
sustain
life
variable.
Intracellular
pools
can
be
conceptualized
chemically
complex
mixture
rapidly
exchanging
(labile)
ions,
complemented
by
those
reservoirs
that
exchange
slowly
relative
cell
metabolism
(sequestered).
Labile
buffered
transient
interactions
with
anionic
metabolites
macromolecules,
ribosome
playing
major
role.
Sequestered
include
many
metalloproteins,
cofactors,
storage
depots,
some
redeployed
upon
depletion.
Here,
I
review
size,
composition,
dynamics
intracellular
highlight
gaps
understanding.
Journal of Bacteriology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 16, 2025
ABSTRACT
TerC
family
proteins
are
widely
conserved
integral
membrane
with
functions
related
to
metal
transport.
In
Bacillus
subtilis
,
the
MeeF
and
MeeY
play
overlapping
roles
in
metalation
of
manganese-requiring
extracellular
enzymes.
interact
secretion
translocon
SecYEG
metalate
either
during
or
after
protein
translocation.
Here,
we
demonstrate
that
swarming
motility
is
dependent
on
MeeY.
This
defect
can
be
complemented
extracellularly
correlated
a
loss
surfactin.
Surfactin
export
mediated
by
SwrC,
an
RND
efflux
pump
previously
shown
co-immunoprecipitation
studies.
The
amendment
growth
medium
manganese
has
long
been
known
enhance
surfactin
production.
We
suggest
model
which
enhanced
MeeY-dependent
lipopeptide
export.
IMPORTANCE
produces
surfactin,
powerful
detergent-like
compound
intercellular
communication,
surface
motility,
as
broad-spectrum
antimicrobial
agent.
Production
cyclic
lipopeptide,
depends
non-ribosomal
peptide
synthase
followed
member
resistance-nodulation-cell
division
(RND)
proteins.
production
additionally
requires
MeeY,
exports
ions
support
function
secreted
metalloenzymes.
propose
interacts
SwrC
facilitate
binding
from
cell.
These
results
may
explain
long-appreciated
role
divalent
industrial
fermentation.
Annual Review of Microbiology,
Journal Year:
2024,
Volume and Issue:
78(1), P. 83 - 102
Published: July 4, 2024
Cell
physiology
requires
innumerable
metalloenzymes
supported
by
the
selective
import
of
metal
ions.
Within
crowded
cytosol,
most
enzymes
acquire
their
cognate
cofactors
from
a
buffered
labile
pool.
Metalation
membrane-bound
and
secreted
exoenzymes
is
more
problematic
since
concentrations
are
highly
variable
outside
cell.
Here,
we
focus
on
involved
in
cell
envelope
homeostasis.
Peptidoglycan
synthesis
often
relies
Zn-dependent
hydrolases,
metal-dependent
β-lactamases
play
important
roles
antibiotic
resistance.
In
gram-positive
bacteria,
lipoteichoic
acid
Mn,
with
TerC
family
Mn
exporters
supporting
role.
For
some
exoenzymes,
metalation
occurs
metalated
exported
through
TAT
secretion
system.
others,
facilitated
exporters,
metallochaperones,
or
partner
proteins
that
enhance
affinity.
To
help
ensure
function,
can
function
multiple
metals.
Thus,
cells
employ
diversity
strategies
to
functioning
cytosol.
Proceedings of the National Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
121(40)
Published: Sept. 12, 2024
Modern
molecular
microbiology
elucidates
the
organizational
principles
of
bacterial
biofilms
via
detailed
examination
interplay
between
signaling
and
gene
regulation.
A
complementary
biophysical
approach
studies
mesoscopic
dependencies
at
cellular
multicellular
levels
with
a
distinct
focus
on
intercellular
forces
mechanical
properties
whole
biofilms.
Here,
motivated
by
recent
advances
in
biofilm
research
other,
seemingly
unrelated
fields
biology
physics,
we
propose
perspective
that
links
biofilm,
dynamic
organism,
physical
processes
occurring
extracellular
milieu.
Using
Bacillus
subtilis
as
an
illustrative
model
specifically
demonstrate
how
such
rationale
explains
architecture,
differentiation,
communication,
stress
responses
desiccation
tolerance,
metabolism,
physiology
across
multiple
scales—from
matrix
proteins
polysaccharides
to
macroscopic
wrinkles
water-filled
channels.
PNAS Nexus,
Journal Year:
2024,
Volume and Issue:
3(2)
Published: Feb. 1, 2024
Abstract
Ornate,
large,
extremophilic
(OLE)
RNAs
comprise
a
class
of
large
noncoding
in
bacteria
whose
members
form
membrane-associated
ribonucleoprotein
(RNP)
complex.
This
complex
facilitates
cellular
adaptation
to
diverse
stresses
such
as
exposure
cold,
short-chain
alcohols,
and
elevated
Mg2+
concentrations.
Here,
we
report
additional
phenotypes
exhibited
by
Halalkalibacterium
halodurans
(formerly
called
Bacillus
halodurans)
strains
lacking
functional
OLE
RNP
complexes.
Genetic
disruption
the
causes
restricted
growth
compared
wild-type
cells
when
cultured
minimal
media
(MM)
wherein
glucose
is
replaced
with
alternative
carbon/energy
sources.
suppressor
selections
conducted
glutamate
MM
yielded
isolates
that
carry
mutations
or
near
genes
relevant
Mn2+
homeostasis
(ykoY
mntB),
phosphate
(phoR),
putative
multidrug
resistance
(bmrCD).
These
links
between
RNA,
management,
other
fundamental
processes
including
protein
secretion
are
consistent
hypothesis
major
contributor
unfavorable
conditions.
Journal of Bacteriology,
Journal Year:
2024,
Volume and Issue:
206(6)
Published: May 31, 2024
Microbes
encounter
a
myriad
of
stresses
during
their
life
cycle.
Dysregulation
metal
ion
homeostasis
is
increasingly
recognized
as
key
factor
in
host-microbe
interactions.
Bacterial
tightly
regulated
by
dedicated
metalloregulators
that
control
uptake,
sequestration,
trafficking,
and
efflux.
Here,
we
demonstrate
deletion
the
ISME Communications,
Journal Year:
2024,
Volume and Issue:
4(1)
Published: Jan. 1, 2024
Abstract
Mobile
genetic
elements
(MGEs)
like
plasmids,
viruses,
and
transposable
can
provide
fitness
benefits
to
their
hosts
for
survival
in
the
presence
of
environmental
stressors.
Heavy
metal
resistance
genes
(HMRGs)
are
frequently
observed
on
MGEs,
suggesting
that
MGEs
may
be
an
important
driver
adaptive
evolution
environments
contaminated
with
heavy
metals.
Here,
we
report
meta-mobilome
metal-contaminated
regions
Oak
Ridge
Reservation
subsurface.
This
was
compared
one
derived
from
samples
collected
unimpacted
We
assembled
1615
unique
circularized
DNA
propose
MGEs.
The
circular
highly
subsurface
were
enriched
HMRG
clusters
relative
those
nearby
regions.
Additionally,
found
these
HMRGs
associated
Gamma
Betaproteobacteria
potentially
facilitate
persistence
dominance
taxa
this
region.
Finally,
conjugative
elements,
potential
future
lateral
transfer.
demonstrate
how
our
understanding
MGE
ecology,
evolution,
function
enhanced
through
genomic
context
provided
by
completed
assemblies.
mSphere,
Journal Year:
2024,
Volume and Issue:
9(6)
Published: May 21, 2024
OLE
(ornate,
large,
extremophilic)
RNAs
are
members
of
a
noncoding
RNA
class
present
in
many
Gram-positive,
extremophilic
bacteria.
The
large
size,
complex
structure,
and
extensive
sequence
conservation
characteristics
consistent
with
the
hypothesis
that
they
likely
function
as
ribozymes.
representative
from