Challenges and opportunities for digital twins in precision medicine from a complex systems perspective
npj Digital Medicine,
Journal Year:
2025,
Volume and Issue:
8(1)
Published: Jan. 17, 2025
Digital
twins
(DTs)
in
precision
medicine
are
increasingly
viable,
propelled
by
extensive
data
collection
and
advancements
artificial
intelligence
(AI),
alongside
traditional
biomedical
methodologies.
We
argue
that
including
mechanistic
simulations
produce
behavior
based
on
explicitly
defined
biological
hypotheses
multiscale
mechanisms
is
beneficial.
It
enables
the
exploration
of
diverse
therapeutic
strategies
supports
dynamic
clinical
decision-making
through
insights
from
network
science,
quantitative
biology,
digital
medicine.
Language: Английский
Lung Tissue Multi-Layer Network Analysis Uncovers the Molecular Heterogeneity of COPD
American Journal of Respiratory and Critical Care Medicine,
Journal Year:
2024,
Volume and Issue:
210(10), P. 1219 - 1229
Published: April 16, 2024
Background.
Chronic
Obstructive
Pulmonary
Disease
(COPD)
is
a
heterogeneous
condition.
We
hypothesized
that
the
unbiased
integration
of
different
COPD
lung
omics
using
novel
multi-layer
approach
may
unravel
mechanisms
associated
with
clinical
characteristics.
Methods.
profiled
mRNA,
miRNA
and
methylome
in
tissue
samples
from
135
former
smokers
COPD.
For
each
omic
(layer)
we
built
patient
network
based
on
molecular
similarity.
The
three
networks
were
used
to
build
network,
optimization
multiplex-modularity
was
employed
identify
communities
across
distinct
layers.
Uncovered
related
features.
Results.
identified
five
which
molecularly
characteristics,
such
as
FEV1
blood
eosinophils.
Two
(C#3
C#4)
had
both
similarly
low
values
emphysema,
but
different:
C#3,
not
C#4,
presented
B
T
cell
signatures
downregulation
secretory
(SCGB1A1/SCGB3A1)
ciliated
cells.
A
machine
learning
model
set
up
discriminate
C#3
C#4
our
cohort,
validate
them
an
independent
cohort.
Finally,
spatial
transcriptomics
characterized
small
airway
differences
between
identifying
upregulation
T/B
homing
chemokines,
bacterial
response
genes
C#3.
Conclusions.
analysis
able
clinically
relevant
communities.
Patients
emphysema
can
have
airways
immune
patterns,
indicating
endotypes
lead
similar
presentation.
Language: Английский
Blood biomarker fingerprints in a cohort of patients with CHRNE-related congenital myasthenic syndrome
Acta Neuropathologica Communications,
Journal Year:
2025,
Volume and Issue:
13(1)
Published: Feb. 13, 2025
Language: Английский
Omics and rare diseases: challenges, applications, and future perspectives
Expert Review of Proteomics,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 16, 2025
Introduction
Rare
diseases
(RDs)
are
a
heterogeneous
group
of
recognized
as
relevant
global
health
priority
but
posing
aspects
complexity
such
as:
geographical
scattering
affected
individuals,
improper/late
diagnosis,
limited
awareness,
difficult
surveillance
and
monitoring,
understanding
natural
history,
lack
treatment.
Usually,
RDs
have
pediatric
onset
life-long,
multisystemic,
associated
with
poor
prognosis.
Language: Английский
Characterization of Clinical Phenotypes in Congenital Myasthenic Syndrome Associated with the c.1327delG Frameshift Mutation in CHRNE Encoding the Acetylcholine Receptor Epsilon Subunit
Journal of Neuromuscular Diseases,
Journal Year:
2024,
Volume and Issue:
11(5), P. 1011 - 1020
Published: July 12, 2024
Congenital
myasthenic
syndromes
(CMS)
are
a
group
of
rare
but
often
treatable
inherited
disorders
neuromuscular
transmission
characterized
by
fatigable
skeletal
muscle
weakness.
In
this
paper
we
present
the
largest
phenotypic
analysis
to
date
cohort
patients
carrying
pathogenic
variant
c.1327delG
in
CHRNE
gene,
leading
CHRNE-CMS.
Language: Английский
Inter-alpha-trypsin inhibitor heavy chain H3 is a potential biomarker for disease activity in myasthenia gravis
Acta Neuropathologica,
Journal Year:
2024,
Volume and Issue:
147(1)
Published: June 1, 2024
Abstract
Myasthenia
gravis
is
a
chronic
antibody-mediated
autoimmune
disease
disrupting
neuromuscular
synaptic
transmission.
Informative
biomarkers
remain
an
unmet
need
to
stratify
patients
with
active
requiring
intensified
monitoring
and
therapy;
their
identification
the
primary
objective
of
this
study.
We
applied
mass
spectrometry-based
proteomic
serum
profiling
for
biomarker
discovery.
studied
exploration
prospective
validation
cohort
consisting
114
140
anti-acetylcholine
receptor
antibody
(AChR-Ab)-positive
myasthenia
patients,
respectively.
For
downstream
analysis,
we
machine
learning
approach.
Protein
expression
levels
were
confirmed
by
ELISA
compared
other
myasthenic
cohorts,
in
addition
myositis
neuropathy
patients.
Anti-AChR-Ab
determined
radio
assay.
Immunohistochemistry
immunofluorescence
intercostal
muscle
biopsies
employed
interactome
studies
inter-alpha-trypsin
inhibitor
heavy
chain
H3
(ITIH3).
Machine
identified
ITIH3
as
potential
reflective
activity.
Serum
correlated
activity
scores
ELISA.
Lack
correlation
between
anti-AChR-Ab
clinical
underlined
biomarkers.
In
subgroup
was
indicative
treatment
responses.
Immunostaining
specimens
from
these
demonstrated
localization
at
endplates
but
not
controls,
thus
providing
structural
equivalent
our
serological
findings.
Immunoprecipitation
subsequent
proteomics
lead
its
interaction
partners
playing
crucial
roles
This
study
provides
data
on
pathophysiological-relevant
gravis.
Future
are
required
facilitate
translation
into
practice.
Language: Английский
Multilayer biological networks to upscale marine research to global change-smart management and sustainable resource use
Diana Madeira,
No information about this author
Carolina Madeira,
No information about this author
Piero Calosi
No information about this author
et al.
The Science of The Total Environment,
Journal Year:
2024,
Volume and Issue:
944, P. 173837 - 173837
Published: June 12, 2024
Language: Английский
Congenital myasthenic syndromes: increasingly complex
Current Opinion in Neurology,
Journal Year:
2024,
Volume and Issue:
37(5), P. 493 - 501
Published: July 25, 2024
Purpose
of
review
Congenital
myasthenia
syndromes
(CMS)
are
treatable,
inherited
disorders
affecting
neuromuscular
transmission.
We
highlight
that
the
involvement
an
increasing
number
proteins
is
making
understanding
disease
mechanisms
and
potential
treatments
progressively
more
complex.
Recent
findings
Although
early
studies
identified
mutations
directly
involved
in
synaptic
transmission
at
junction,
recently,
next-generation
sequencing
has
facilitated
identification
many
novel
genes
encode
have
a
far
wider
expression
profile,
some
even
ubiquitously
expressed,
but
whose
defective
function
leads
to
impaired
Unsurprisingly,
these
often
causes
phenotypic
spectrum
where
forms
only
one
component.
This
implications
for
management
CMS
patients.
Summary
Given
widening
nonneuromuscular
junction
phenotypes
newly
CMS,
new
therapies
need
include
disease-modifying
approaches
address
not
weakness
also
multisystem
involvement.
Whilst
current
highly
effective
subtypes
there
remains,
proportion
patients,
unmet
efficacious
therapies.
Language: Английский