Intraspecific Chloroplast Genome Genetic Polymorphism of Pinellia ternata (Xi Junecry) and Its Revelation of a Single Origin in Phylogeny DOI Open Access
W Xing, Weihui Yu, Yuanyuan Kong

et al.

Genes, Journal Year: 2024, Volume and Issue: 15(12), P. 1638 - 1638

Published: Dec. 20, 2024

Background: Xi Junecry (Pinellia ternata), a perennial herb of the Araceae family, is indigenous to Xinxian County, Henan Province, China, and regarded as premium variety among similar medicinal materials. However, lack comprehensive genetic information on germplasm resources has constrained cultivation identification high-quality varieties. Methods: In this study, six chloroplast genomes were assembled annotated using high-throughput sequencing. Subsequently, comparative analyses conducted, phylogenetic tree was constructed. Results: The genome lengths ranged from 157,456 158,406 bp, GC content between 36.0% 36.2%. A total 265 single nucleotide polymorphism sites identified across genomes, with whole-genome diversity (Pi) value 0.00084. Among four genomic regions, small single-copy region exhibited highest Pi, followed by large region, while inverted repeat showed lowest. Nucleotide in coding regions significantly lower than non-coding regions. Nine hypervariable identified, follows: ndhE-ndhG, trnN-GUU-ndhF, trnS-GCU-trnG-UCC, atpB-rbcL, psaI, accD-ycf4, psbE-petL, psaC-ndhE, psbI-trnG-UCC. Positive selection detected accD rbcL genes. Phylogenetic analysis clustered samples into distinct clade, separating them other regional Pinellia samples. Conclusions: These findings elucidate variation levels provide high-variability loci for population history inference, assessment, species domestication studies, new cultivar development.

Language: Английский

Multinational evaluation of genetic diversity indicators for the Kunming‐Montreal Global Biodiversity Framework DOI Creative Commons
Alicia Mastretta‐Yanes, Jessica M. da Silva, Catherine E. Grueber

et al.

Ecology Letters, Journal Year: 2024, Volume and Issue: 27(7)

Published: July 1, 2024

Abstract Under the recently adopted Kunming‐Montreal Global Biodiversity Framework, 196 Parties committed to reporting status of genetic diversity for all species. To facilitate reporting, three indicators were developed, two which focus on processes contributing conservation: maintaining genetically distinct populations and ensuring are large enough maintain diversity. The major advantage these is that they can be estimated with or without DNA‐based data. However, demonstrating their feasibility requires addressing methodological challenges using data gathered from diverse sources, across taxonomic groups, countries varying socio‐economic biodiversity levels. Here, we assess 919 taxa, representing 5271 nine countries, including megadiverse developing economies. Eighty‐three percent taxa assessed had available calculate at least one indicator. Our results show although majority species most populations, 58% have too small Moreover, indicator values suggest IUCN Red List other initiatives fail status, highlighting critical importance indicators.

Language: Английский

Citations

24

Incorporating Genetic Diversity to Optimize the Plant Conservation Network in the Third Pole DOI Creative Commons
Moses C. Wambulwa,

Guang‐Fu Zhu,

Ya‐Huang Luo

et al.

Global Change Biology, Journal Year: 2025, Volume and Issue: 31(3)

Published: March 1, 2025

Climate change poses a significant threat to the survival of many species. Although protected areas can slow down biodiversity loss, they often lack systematic planning and do not integrate genetic diversity. Genetic diversity is key prerequisite for species ability tolerate new conditions. Using population distribution data from 96 plant in Third Pole (encompassing Tibetan Plateau adjacent mountains), we mapped patterns diversity, projected climate-driven range dynamics future erosion, designed an optimal conservation framework region. We identified several patches high haplotype (HD), with relatively number haplotypes southeastern Pole. Regression models revealed that climate topography have interacted shape latitude precipitation being best predictors HD cpDNA nrDNA, respectively. Ecological niche modeling predicted approximate 43 km northwestward 86 m upward shift suitable habitats under scenarios, likely leading loss up 13.19% 15.49% nrDNA Alarmingly, 71.20% newly priority fall outside existing planned National Park Clusters. Therefore, recommend expanding network by 2.02 × 105 km2 (5.91%) Pole, increasing total conserved area 1.36 106 (39.93%) effectively preserve evolutionary potential plants. This study represents innovative attempt incorporate into efforts.

Language: Английский

Citations

2

Analysis of future climate variability under CMIP6 scenarios based on a downscaling method considering wet days in the upper Yangtze River basin, China DOI Creative Commons
Hanqiu Xu, Daniele Bocchiola

Theoretical and Applied Climatology, Journal Year: 2025, Volume and Issue: 156(2)

Published: Jan. 13, 2025

Abstract According to recent studies, the past decade was hottest on record, and climate change is accelerating. As part of Yangtze River Basin, largest river basin in China, Upper Basin (UYRB) plays a crucial role as primary source hydropower. However, UYRB also one most climate-sensitive regions within basin, making impact this area particularly critical. We downscaled CMIP6 GCMs’ outputs precipitation (including wet/dry spells sequence correction), temperature projections (2024–2100), under four typical Shared Socioeconomic Pathways (SSPs), we pursued trend analysis upon these potential future series. found significant upward trends across all SSPs August, but no for same month. Additionally, SSP370 SSP585, there are December, while showed during that This may result drier winters than now, increased evapotranspiration, reduced surface (snow) water storage, impacting resources availability. Consecutive dry/wet days at station, scale show spatial-temporal heterogeneity, generally wet longer, dry shorten moving from South-East North-West.

Language: Английский

Citations

1

Effective population size of adult and offspring cohorts as a genetic monitoring tool in two stand-forming and wind-pollinated tree species: Fagus sylvatica L. and Picea abies (L.) Karst. DOI Creative Commons
Heike Liesebach, Pascal Eusemann, Aki Michael Höltken

et al.

Conservation Genetics, Journal Year: 2024, Volume and Issue: 25(3), P. 739 - 753

Published: Feb. 11, 2024

Abstract Genetic diversity is considered to be a prerequisite for adaptation and adaptability as it key element of biological diversity. However, the monitoring genetic has tended ignored in biodiversity monitoring. We report comprehensive effort two dominant forest tree species, which was started with baseline survey 12 European beech populations 10 Norway spruce Germany. The standardized experimental design based on collecting samples at least 250 adult trees, 400 natural regeneration seed their genotyping 15–16 high-resolution SSR markers. In addition commonly used mean values across markers quantify diversity, we placed special emphasis various marker-based, pedigree-based demographic models estimating contemporary effective population size N e different generations. both spruce, no variation detectable between studied stands age cohorts. detected that stable allelic progeny generations ensured by sufficient gene flow from surrounding forests. estimates show marked differentiation among Natural appear converge parent generation, while clear bottleneck effect. parameter can derive conclusions sustainable management stand approvals including adequate collections appropriate artificial regenerations.The sibship frequency-based method presented much more robust than widely LD estimates, often fail too weak relatedness. Despite distinct kinship structure our plots, proves an essential assessing integrity reproductive system.

Language: Английский

Citations

5

DNA-based studies and genetic diversity indicator assessments are complementary approaches to conserving evolutionary potential DOI Creative Commons
Sean Hoban, Ivan Paz‐Vinas, Robyn E. Shaw

et al.

Conservation Genetics, Journal Year: 2024, Volume and Issue: 25(6), P. 1147 - 1153

Published: Aug. 21, 2024

Abstract Genetic diversity is essential for maintaining healthy populations and ecosystems. Several approaches have recently been developed to evaluate population genetic trends without necessarily collecting new data. Such “genetic indicators” enable rapid, large-scale evaluation across dozens thousands of species. Empirical studies, when available, provide detailed information that important management, such as estimates gene flow, inbreeding, erosion adaptation. In this article, we argue the development advancement indicators a complementary approach studies in conservation biology, but not substitute. empirical data can different conserving diversity. affordable tracking, reporting, prioritization communication, although, being proxies, do comprehensive status Conversely, methods offer analysis given species or population, although they remain challenging implement most globally, current capacity resourcing. We conclude are both actions recommend be used combination monitoring

Language: Английский

Citations

5

Synthetic biology enables mushrooms to meet emerging sustainable challenges DOI Creative Commons
Gen Zou, Tian Li, Ivan Mijaković

et al.

Frontiers in Microbiology, Journal Year: 2024, Volume and Issue: 15

Published: Feb. 13, 2024

With the increasing sustainability challenges, synthetic biology is offering new possibilities for addressing emerging problems through cultivation and fermentation of mushrooms. In this perspective, we aim to provide an overview on research applications mushroom biology, emphasizing need increased attention inclusion rapidly advancing field in future technology over China other countries. By leveraging mushrooms are expected play a more versatile role various area, including traditional fields like circular economy, human wellness pharmaceutics, as well vegan meat, mushroom-based materials pollution abatement. We confident that these efforts using strategies have potential strengthen our capacity effectively address sustainable leading development social economy ecology.

Language: Английский

Citations

4

Genomic variation of European beech reveals signals of local adaptation despite high levels of phenotypic plasticity DOI Creative Commons
Desanka Lazić, Cornelia Geßner, Katharina J. Liepe

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: Oct. 3, 2024

Language: Английский

Citations

4

Empowering Regional Conservation: Genetic Diversity Assessments as a Tool for Eelgrass Management DOI Creative Commons
E. C. Faust, Kristie Rigby, Anders Olsson

et al.

Molecular Ecology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 12, 2025

To halt the loss of biodiversity, collaboration among scientists, managers and decision-makers is vital. Although biodiversity a global problem, management actions influencing diversity are often on local to regional scale. Our study an example conservation genomic assessment developed in between scientists managers. We used 2bRAD sequencing assess 18 eelgrass (Zostera marina) meadows northwestern Sweden, area that has experienced large losses since 1980s. Genetic was comparable other assessed Atlantic, but order magnitude lower than Pacific. All one meadow showed high rates sexual reproduction. Almost all were divergent grouped into five genetic clusters. Four clusters correspond geographic regions can be define units. Meadows areas with decline 1980s 2020s more inbred increase eelgrass. Overall, our results indicate striving protect number within each cluster important for maintaining connectivity Sweden likely beneficial wider ecosystem. estimate current indicators essential variables discuss their challenges marine facultative clonal species. showcase how regional-scale assessments serve as foundation protection restoration priority

Language: Английский

Citations

0

Genetic structure and divergence of marginal populations of black poplar (Populus nigra L.) in Poland DOI Creative Commons
Weronika Barbara Żukowska, Andrzej Lewandowski

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: Jan. 23, 2025

Genetic diversity is crucial to secure the survival and sustainability of ecosystems. Given anthropogenic pressure, as well projected alterations connected with level circulation water, riparian forests are particular concern. In this paper, we assessed genetic variation black poplar – one keystone tree species riverine forests. The natural habitats have been severely transformed leading a significant decline its population size. Using set 18 nuclear microsatellites geographic location data, studied 26 remnant populations (1,261 trees) located along biggest river valleys in Poland. Our main goal was assess overall verify if range fragmentation habitat transformation disrupted gene exchange among populations. Genotyping revealed that 261 trees were clones. clonality higher more sections. All probably gone through drastic bottleneck distant past, most them low effective sizes. Still, remains high, but certain require attention due their lower variation, strong spatial structure. differentiation low, yet Bayesian clustering supported existence 11 clusters. According results, prevalent between adjacent Relatively free flow occurs only Vistula, particularly middle section which characterized by highest variation. Noticeable structuring observed Oder. Populations at margin showed signs divergence reduction We conclude human activities impacted pool Poland disrupting landscape connectivity preventing from generative reproduction. study provides practical guidelines on how develop implement conservation program for It also presents case favoring renaturation monitoring, concerning species.

Language: Английский

Citations

0

Five recommendations to fill the blank space in indicators at local and short-term scales DOI Creative Commons
Katherine Hébert,

Maximiliane Jousse,

Janaína Serrano

et al.

Biological Conservation, Journal Year: 2025, Volume and Issue: 302, P. 111007 - 111007

Published: Feb. 1, 2025

Language: Английский

Citations

0