Genes,
Journal Year:
2024,
Volume and Issue:
15(12), P. 1638 - 1638
Published: Dec. 20, 2024
Background:
Xi
Junecry
(Pinellia
ternata),
a
perennial
herb
of
the
Araceae
family,
is
indigenous
to
Xinxian
County,
Henan
Province,
China,
and
regarded
as
premium
variety
among
similar
medicinal
materials.
However,
lack
comprehensive
genetic
information
on
germplasm
resources
has
constrained
cultivation
identification
high-quality
varieties.
Methods:
In
this
study,
six
chloroplast
genomes
were
assembled
annotated
using
high-throughput
sequencing.
Subsequently,
comparative
analyses
conducted,
phylogenetic
tree
was
constructed.
Results:
The
genome
lengths
ranged
from
157,456
158,406
bp,
GC
content
between
36.0%
36.2%.
A
total
265
single
nucleotide
polymorphism
sites
identified
across
genomes,
with
whole-genome
diversity
(Pi)
value
0.00084.
Among
four
genomic
regions,
small
single-copy
region
exhibited
highest
Pi,
followed
by
large
region,
while
inverted
repeat
showed
lowest.
Nucleotide
in
coding
regions
significantly
lower
than
non-coding
regions.
Nine
hypervariable
identified,
follows:
ndhE-ndhG,
trnN-GUU-ndhF,
trnS-GCU-trnG-UCC,
atpB-rbcL,
psaI,
accD-ycf4,
psbE-petL,
psaC-ndhE,
psbI-trnG-UCC.
Positive
selection
detected
accD
rbcL
genes.
Phylogenetic
analysis
clustered
samples
into
distinct
clade,
separating
them
other
regional
Pinellia
samples.
Conclusions:
These
findings
elucidate
variation
levels
provide
high-variability
loci
for
population
history
inference,
assessment,
species
domestication
studies,
new
cultivar
development.
Ecology Letters,
Journal Year:
2024,
Volume and Issue:
27(7)
Published: July 1, 2024
Abstract
Under
the
recently
adopted
Kunming‐Montreal
Global
Biodiversity
Framework,
196
Parties
committed
to
reporting
status
of
genetic
diversity
for
all
species.
To
facilitate
reporting,
three
indicators
were
developed,
two
which
focus
on
processes
contributing
conservation:
maintaining
genetically
distinct
populations
and
ensuring
are
large
enough
maintain
diversity.
The
major
advantage
these
is
that
they
can
be
estimated
with
or
without
DNA‐based
data.
However,
demonstrating
their
feasibility
requires
addressing
methodological
challenges
using
data
gathered
from
diverse
sources,
across
taxonomic
groups,
countries
varying
socio‐economic
biodiversity
levels.
Here,
we
assess
919
taxa,
representing
5271
nine
countries,
including
megadiverse
developing
economies.
Eighty‐three
percent
taxa
assessed
had
available
calculate
at
least
one
indicator.
Our
results
show
although
majority
species
most
populations,
58%
have
too
small
Moreover,
indicator
values
suggest
IUCN
Red
List
other
initiatives
fail
status,
highlighting
critical
importance
indicators.
Global Change Biology,
Journal Year:
2025,
Volume and Issue:
31(3)
Published: March 1, 2025
Climate
change
poses
a
significant
threat
to
the
survival
of
many
species.
Although
protected
areas
can
slow
down
biodiversity
loss,
they
often
lack
systematic
planning
and
do
not
integrate
genetic
diversity.
Genetic
diversity
is
key
prerequisite
for
species
ability
tolerate
new
conditions.
Using
population
distribution
data
from
96
plant
in
Third
Pole
(encompassing
Tibetan
Plateau
adjacent
mountains),
we
mapped
patterns
diversity,
projected
climate-driven
range
dynamics
future
erosion,
designed
an
optimal
conservation
framework
region.
We
identified
several
patches
high
haplotype
(HD),
with
relatively
number
haplotypes
southeastern
Pole.
Regression
models
revealed
that
climate
topography
have
interacted
shape
latitude
precipitation
being
best
predictors
HD
cpDNA
nrDNA,
respectively.
Ecological
niche
modeling
predicted
approximate
43
km
northwestward
86
m
upward
shift
suitable
habitats
under
scenarios,
likely
leading
loss
up
13.19%
15.49%
nrDNA
Alarmingly,
71.20%
newly
priority
fall
outside
existing
planned
National
Park
Clusters.
Therefore,
recommend
expanding
network
by
2.02
×
105
km2
(5.91%)
Pole,
increasing
total
conserved
area
1.36
106
(39.93%)
effectively
preserve
evolutionary
potential
plants.
This
study
represents
innovative
attempt
incorporate
into
efforts.
Theoretical and Applied Climatology,
Journal Year:
2025,
Volume and Issue:
156(2)
Published: Jan. 13, 2025
Abstract
According
to
recent
studies,
the
past
decade
was
hottest
on
record,
and
climate
change
is
accelerating.
As
part
of
Yangtze
River
Basin,
largest
river
basin
in
China,
Upper
Basin
(UYRB)
plays
a
crucial
role
as
primary
source
hydropower.
However,
UYRB
also
one
most
climate-sensitive
regions
within
basin,
making
impact
this
area
particularly
critical.
We
downscaled
CMIP6
GCMs’
outputs
precipitation
(including
wet/dry
spells
sequence
correction),
temperature
projections
(2024–2100),
under
four
typical
Shared
Socioeconomic
Pathways
(SSPs),
we
pursued
trend
analysis
upon
these
potential
future
series.
found
significant
upward
trends
across
all
SSPs
August,
but
no
for
same
month.
Additionally,
SSP370
SSP585,
there
are
December,
while
showed
during
that
This
may
result
drier
winters
than
now,
increased
evapotranspiration,
reduced
surface
(snow)
water
storage,
impacting
resources
availability.
Consecutive
dry/wet
days
at
station,
scale
show
spatial-temporal
heterogeneity,
generally
wet
longer,
dry
shorten
moving
from
South-East
North-West.
Conservation Genetics,
Journal Year:
2024,
Volume and Issue:
25(3), P. 739 - 753
Published: Feb. 11, 2024
Abstract
Genetic
diversity
is
considered
to
be
a
prerequisite
for
adaptation
and
adaptability
as
it
key
element
of
biological
diversity.
However,
the
monitoring
genetic
has
tended
ignored
in
biodiversity
monitoring.
We
report
comprehensive
effort
two
dominant
forest
tree
species,
which
was
started
with
baseline
survey
12
European
beech
populations
10
Norway
spruce
Germany.
The
standardized
experimental
design
based
on
collecting
samples
at
least
250
adult
trees,
400
natural
regeneration
seed
their
genotyping
15–16
high-resolution
SSR
markers.
In
addition
commonly
used
mean
values
across
markers
quantify
diversity,
we
placed
special
emphasis
various
marker-based,
pedigree-based
demographic
models
estimating
contemporary
effective
population
size
N
e
different
generations.
both
spruce,
no
variation
detectable
between
studied
stands
age
cohorts.
detected
that
stable
allelic
progeny
generations
ensured
by
sufficient
gene
flow
from
surrounding
forests.
estimates
show
marked
differentiation
among
Natural
appear
converge
parent
generation,
while
clear
bottleneck
effect.
parameter
can
derive
conclusions
sustainable
management
stand
approvals
including
adequate
collections
appropriate
artificial
regenerations.The
sibship
frequency-based
method
presented
much
more
robust
than
widely
LD
estimates,
often
fail
too
weak
relatedness.
Despite
distinct
kinship
structure
our
plots,
proves
an
essential
assessing
integrity
reproductive
system.
Conservation Genetics,
Journal Year:
2024,
Volume and Issue:
25(6), P. 1147 - 1153
Published: Aug. 21, 2024
Abstract
Genetic
diversity
is
essential
for
maintaining
healthy
populations
and
ecosystems.
Several
approaches
have
recently
been
developed
to
evaluate
population
genetic
trends
without
necessarily
collecting
new
data.
Such
“genetic
indicators”
enable
rapid,
large-scale
evaluation
across
dozens
thousands
of
species.
Empirical
studies,
when
available,
provide
detailed
information
that
important
management,
such
as
estimates
gene
flow,
inbreeding,
erosion
adaptation.
In
this
article,
we
argue
the
development
advancement
indicators
a
complementary
approach
studies
in
conservation
biology,
but
not
substitute.
empirical
data
can
different
conserving
diversity.
affordable
tracking,
reporting,
prioritization
communication,
although,
being
proxies,
do
comprehensive
status
Conversely,
methods
offer
analysis
given
species
or
population,
although
they
remain
challenging
implement
most
globally,
current
capacity
resourcing.
We
conclude
are
both
actions
recommend
be
used
combination
monitoring
Frontiers in Microbiology,
Journal Year:
2024,
Volume and Issue:
15
Published: Feb. 13, 2024
With
the
increasing
sustainability
challenges,
synthetic
biology
is
offering
new
possibilities
for
addressing
emerging
problems
through
cultivation
and
fermentation
of
mushrooms.
In
this
perspective,
we
aim
to
provide
an
overview
on
research
applications
mushroom
biology,
emphasizing
need
increased
attention
inclusion
rapidly
advancing
field
in
future
technology
over
China
other
countries.
By
leveraging
mushrooms
are
expected
play
a
more
versatile
role
various
area,
including
traditional
fields
like
circular
economy,
human
wellness
pharmaceutics,
as
well
vegan
meat,
mushroom-based
materials
pollution
abatement.
We
confident
that
these
efforts
using
strategies
have
potential
strengthen
our
capacity
effectively
address
sustainable
leading
development
social
economy
ecology.
Molecular Ecology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 12, 2025
To
halt
the
loss
of
biodiversity,
collaboration
among
scientists,
managers
and
decision-makers
is
vital.
Although
biodiversity
a
global
problem,
management
actions
influencing
diversity
are
often
on
local
to
regional
scale.
Our
study
an
example
conservation
genomic
assessment
developed
in
between
scientists
managers.
We
used
2bRAD
sequencing
assess
18
eelgrass
(Zostera
marina)
meadows
northwestern
Sweden,
area
that
has
experienced
large
losses
since
1980s.
Genetic
was
comparable
other
assessed
Atlantic,
but
order
magnitude
lower
than
Pacific.
All
one
meadow
showed
high
rates
sexual
reproduction.
Almost
all
were
divergent
grouped
into
five
genetic
clusters.
Four
clusters
correspond
geographic
regions
can
be
define
units.
Meadows
areas
with
decline
1980s
2020s
more
inbred
increase
eelgrass.
Overall,
our
results
indicate
striving
protect
number
within
each
cluster
important
for
maintaining
connectivity
Sweden
likely
beneficial
wider
ecosystem.
estimate
current
indicators
essential
variables
discuss
their
challenges
marine
facultative
clonal
species.
showcase
how
regional-scale
assessments
serve
as
foundation
protection
restoration
priority
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: Jan. 23, 2025
Genetic
diversity
is
crucial
to
secure
the
survival
and
sustainability
of
ecosystems.
Given
anthropogenic
pressure,
as
well
projected
alterations
connected
with
level
circulation
water,
riparian
forests
are
particular
concern.
In
this
paper,
we
assessed
genetic
variation
black
poplar
–
one
keystone
tree
species
riverine
forests.
The
natural
habitats
have
been
severely
transformed
leading
a
significant
decline
its
population
size.
Using
set
18
nuclear
microsatellites
geographic
location
data,
studied
26
remnant
populations
(1,261
trees)
located
along
biggest
river
valleys
in
Poland.
Our
main
goal
was
assess
overall
verify
if
range
fragmentation
habitat
transformation
disrupted
gene
exchange
among
populations.
Genotyping
revealed
that
261
trees
were
clones.
clonality
higher
more
sections.
All
probably
gone
through
drastic
bottleneck
distant
past,
most
them
low
effective
sizes.
Still,
remains
high,
but
certain
require
attention
due
their
lower
variation,
strong
spatial
structure.
differentiation
low,
yet
Bayesian
clustering
supported
existence
11
clusters.
According
results,
prevalent
between
adjacent
Relatively
free
flow
occurs
only
Vistula,
particularly
middle
section
which
characterized
by
highest
variation.
Noticeable
structuring
observed
Oder.
Populations
at
margin
showed
signs
divergence
reduction
We
conclude
human
activities
impacted
pool
Poland
disrupting
landscape
connectivity
preventing
from
generative
reproduction.
study
provides
practical
guidelines
on
how
develop
implement
conservation
program
for
It
also
presents
case
favoring
renaturation
monitoring,
concerning
species.