Agricultural Water Management,
Journal Year:
2023,
Volume and Issue:
289, P. 108563 - 108563
Published: Oct. 19, 2023
In
the
agricultural
zones
of
arid
Xinjiang
region
China,
reducing
irrigation
is
mandatory.
However,
affects
composition
and
diversity
soil
bacterial
community
which
vital
to
crop
yield.
To
best
our
knowledge,
very
little
research
has
been
conducted
on
relationships
among
community,
method,
yield
as
well
their
underlying
in
jujube
agroecosystems.
Here,
we
investigated
physicochemistry
communities
fields
subjected
drip
(DI)
traditional
flood
(FI),
associations
with
at
flowering
fruit
set
(FFS)
end-of-growth
(EG)
stages.
Under
DI,
was
8712.00
±
24.54
kg/hm2,
7.64%
higher
than
that
obtained
under
FI
(8094.33
43.67
kg/hm2).
DI
increased
relative
bacteria
by
decreasing
moisture
content
increasing
nutrient
levels
soil.
also
transformed
so
Bacteroidota
predominated
FFS
stage
probiotics
Chloroflexi
Firmicutes
EG
stage.
A
co-occurrence
network
analysis
showed
created
stable
complex
Soil
fields,
Though
Dependentiae
Deferriberota
had
low
abundance,
they
were
nonetheless
key
nodes
network.
neutral
model
(NCM)
revealed
stochastic
processes
drove
assembly
whereas
promoted
deterministic
regulating
levels.
Partial
least
squares
path
modeling
(PLS-PM)
disclosed
affected
structure
(−0.342
**)
(0.557
The
PLS-PM
demonstrated
observed
change
main
reason
for
increase
(1.098
**).
present
work
provides
insights
into
mechanisms
correlations
between
response
changes
method.
Environmental Science & Technology,
Journal Year:
2022,
Volume and Issue:
56(14), P. 10349 - 10360
Published: June 24, 2022
Emissions
of
n-alkanes
are
facing
increasingly
stringent
management
challenges.
Biotrickling
filtration
in
the
presence
surfactants
is
a
competitive
alternative
for
enhanced
removal
n-alkanes.
Herein,
sodium
dodecyl
benzene
sulfonate
(SDBS)
was
added
into
liquid
phase
feeding
biotrickling
filter
(BTF)
to
enhance
various
short-chain
from
n-hexane
(C6)
methane
(C1).
The
performance
C6–C1
and
microbial
response
mechanisms
were
explored.
results
showed
that
efficiency
(RE)
decreased
77
±
1.3
35
5.6%
as
carbon
chain
number
C6
C1,
under
conditions
an
n-alkane
inlet
load
58
3.0
g/m3·h
EBCT
30
s.
significantly
by
introduction
15
mg/L
SDBS,
RE
reached
99
0.7%
C1
74
3.3%.
strengthening
apparent
Henry's
law
coefficient
11
1.4–30
0.3%,
cell
surface
hydrophobicity
microorganisms
improved
71
5.6
87
4.0%
with
existence
SDBS.
Moreover,
SDBS
promoted
succession
activity
community.
activities
alkane
hydroxylase
alcohol
dehydrogenase
5.8
5.9
times
higher
than
those
without
concentration
cytochrome
P450
gene
2.2
times.
Therefore,
addition
effective
strategy
makes
BTF
suitable
waste
gas
streams.
Nature Microbiology,
Journal Year:
2023,
Volume and Issue:
8(4), P. 581 - 595
Published: Feb. 6, 2023
Abstract
Molecular
hydrogen
(H
2
)
is
an
abundant
and
readily
accessible
energy
source
in
marine
systems,
but
it
remains
unknown
whether
microbial
communities
consume
this
gas.
Here
we
use
a
suite
of
approaches
to
show
that
bacteria
H
support
growth.
Genes
for
-uptake
hydrogenases
are
prevalent
global
ocean
metagenomes,
highly
expressed
metatranscriptomes
found
across
eight
bacterial
phyla.
Capacity
oxidation
increases
with
depth
decreases
oxygen
concentration,
suggesting
important
environments
low
primary
production.
Biogeochemical
measurements
tropical,
temperate
subantarctic
waters,
axenic
cultures
microbes
supplied
at
environmentally
relevant
concentrations,
yielding
enough
cell-specific
power
growth
requirements.
Conversely,
our
results
indicate
carbon
monoxide
(CO)
primarily
supports
survival.
Altogether,
notable
may
influence
oceanic
ecology
biogeochemistry.
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Feb. 23, 2023
Abstract
Understanding
the
interactions
between
plants
and
microorganisms
can
inform
microbiome
management
to
enhance
crop
productivity
resilience
stress.
Here,
we
apply
a
genome-centric
approach
identify
ecologically
important
leaf
members
on
replicated
plots
of
field-grown
switchgrass
miscanthus,
quantify
their
activities
over
two
growing
seasons
for
switchgrass.
We
use
metagenome
metatranscriptome
sequencing
curate
40
medium-
high-quality
metagenome-assembled-genomes
(MAGs).
find
that
classes
represented
by
these
MAGs
(Actinomycetia,
Alpha-
Gamma-
Proteobacteria,
Bacteroidota)
are
active
in
late
season,
upregulate
transcripts
short-chain
dehydrogenase,
molybdopterin
oxidoreductase,
polyketide
cyclase.
Stress-associated
pathways
expressed
most
MAGs,
suggesting
engagement
with
host
environment.
also
detect
seasonally
activated
biosynthetic
terpenes
various
non-ribosomal
peptide
poorly
annotated.
Our
findings
support
leaf-associated
bacterial
populations
dynamic
responsive
cues.
ISME Communications,
Journal Year:
2024,
Volume and Issue:
4(1)
Published: Jan. 1, 2024
Abstract
Not
all
bacteria
are
fast
growers.
In
soil
as
in
other
environments,
exist
along
a
continuum—from
copiotrophs
that
can
grow
rapidly
under
resource-rich
conditions
to
oligotrophs
adapted
life
the
“slow
lane.”
However,
field
of
microbiology
is
built
almost
exclusively
on
study
due,
part,
ease
studying
them
vitro.
To
begin
understanding
attributes
oligotrophs,
we
analyzed
three
independent
datasets
represent
contrasts
organic
carbon
availability.
These
included
185
samples
collected
from
profiles
across
USA,
950
paired
bulk
and
rhizosphere
Europe,
soils
microcosm
experiment
where
availability
was
manipulated
directly.
Using
combination
marker
gene
sequencing
targeted
genomic
analyses,
identified
specific
oligotrophic
taxa
were
consistently
more
abundant
carbon-limited
environments
(subsurface,
bulk,
unamended
soils)
compared
corresponding
carbon-rich
environment
(surface,
rhizosphere,
glucose-amended
soils),
including
members
Dormibacterota
Chloroflexi
phyla.
general,
putative
had
smaller
genomes,
slower
maximum
potential
growth
rates,
under-represented
culture
collections.
The
genomes
likely
be
enriched
pathways
allow
metabolize
range
energy
sources
store
carbon,
while
genes
associated
with
energy-intensive
functions
like
chemotaxis
motility
under-represented.
few
shared,
highlighting
use
different
metabolic
strategies
regulatory
thrive
resource-limited
soils.
Atmospheric chemistry and physics,
Journal Year:
2024,
Volume and Issue:
24(7), P. 4217 - 4229
Published: April 9, 2024
Abstract.
Hydrogen
(H2)
is
a
promising
low-carbon
alternative
to
fossil
fuels
for
many
applications.
However,
significant
gaps
in
our
understanding
of
the
atmospheric
H2
budget
limit
ability
predict
impacts
greater
usage.
Here
we
use
NOAA
dry
air
mole
fraction
observations
from
samples
collected
ground-based
and
ship
platforms
during
2010–2019
evaluate
representation
GFDL-AM4.1
chemistry-climate
model.
We
find
that
base
model
configuration
captures
observed
interhemispheric
gradient
well
but
underestimates
surface
concentration
by
about
10
ppb.
Additionally,
fails
reproduce
1–2
ppb
yr−1
mean
increase
at
background
stations.
show
cause
most
likely
an
underestimation
current
anthropogenic
emissions,
including
potential
leakages
H2-producing
facilities.
also
changes
soil
moisture,
temperature,
snow
cover
have
caused
magnitude
sink,
important
removal
mechanism
H2,
especially
Northern
Hemisphere.
there
remains
uncertainty
due
fundamental
removal,
such
as
minimum
moisture
required
uptake,
which
performed
extensive
sensitivity
analyses.
Finally,
meridional
mixing
ratio
its
seasonality
can
provide
constraints
test
refine
parameterizations
sink.
mSystems,
Journal Year:
2020,
Volume and Issue:
5(6)
Published: Nov. 16, 2020
How
the
diverse
bacterial
communities
inhabiting
desert
soils
maintain
energy
and
carbon
needs
is
much
debated.
Traditionally,
most
bacteria
are
thought
to
persist
by
using
organic
synthesized
photoautotrophs
following
transient
hydration
events.
Recent
studies
focused
on
Antarctic
have
revealed,
however,
that
some
use
atmospheric
trace
gases,
such
as
hydrogen
(H