Single Cell Analyses Reveal a Functionally Heterogeneous Exhausted CD8+ T Cell Subpopulation that is Correlated with Response to Checkpoint Therapy in Melanoma DOI
Kelly Mahuron, Osmaan Shahid, Prachi Sao

et al.

Cancer Research, Journal Year: 2025, Volume and Issue: 85(8), P. 1424 - 1440

Published: March 5, 2025

PD-1 pathway inhibitors have revolutionized cancer therapy. However, most patients do not durably benefit, highlighting the need for biomarkers to stratify as responders or nonresponders. Although CD8+ tumor-infiltrating lymphocytes (TIL) been associated with immune checkpoint therapy response, there is no consensus on which TIL subpopulations prognostic value. Preclinical studies focused progenitor-like exhausted T cells (TPEX) because TPEX proliferate more in response than other T-cell (TEX) subpopulations. inhibitor treatment drives differentiation into TEX populations that can mediate antitumor immunity. These data complicate ability identify prognostically important predict response. In this study, we found advanced melanoma ≥20% of TILs coexpressing and CTLA4 (termed CPHi TIL) had better objective rates survival following monotherapy those below threshold. Characterization subset using bulk single-cell RNA sequencing showed although TPEX-like were present within subset, they minority these cells. Rather, population was numerically dominated by subsets, including cycling, terminally exhausted-like, cytotoxic-like, and/or resident memory-like populations, a enriched glycolytic genes. Collectively, show correlate melanoma, but heterogeneous mix different may differentially contribute immunity blockade. Significance: The PD-1+ CTLA4+ lymphocyte correlating immunotherapy subpopulations, has implications optimizing checkpoint-based immunotherapy.

Language: Английский

TCellSI: A novel method for T cell state assessment and its applications in immune environment prediction DOI Creative Commons

Jing‐Min Yang,

Nan Zhang, Tao Luo

et al.

iMeta, Journal Year: 2024, Volume and Issue: 3(5)

Published: Aug. 26, 2024

Abstract T cell is an indispensable component of the immune system and its multifaceted functions are shaped by distinct types their various states. Although multiple computational models exist for predicting abundance diverse types, tools assessing states to characterize degree resting, activation, suppression lacking. To address this gap, a robust nuanced scoring tool called state identifier (TCellSI) leveraging Mann–Whitney U statistics established. The TCellSI methodology enables evaluation eight states—Quiescence, Regulating, Proliferation, Helper, Cytotoxicity, Progenitor exhaustion, Terminal Senescence—from transcriptome data, providing scores (TCSS) samples through specific marker gene sets compiled reference spectrum. Validated against sizeable pseudo‐bulk actual bulk RNA‐seq data across range not only accurately characterizes but also surpasses existing well‐discovered signatures in reflecting nature cells. Significantly, demonstrates predictive value environment, correlating with patient prognosis responses immunotherapy. For better utilization, readily accessible user‐friendly R package web server ( https://guolab.wchscu.cn/TCellSI/ ). By offering insights into personalized cancer therapies, has potential improve treatment outcomes efficacy.

Language: Английский

Citations

5

Single cell analyses reveal the PD-1 blockade response-related immune features in hepatocellular carcinoma DOI Creative Commons
Yao Li, Fengwei Li,

Lei Xu

et al.

Theranostics, Journal Year: 2024, Volume and Issue: 14(9), P. 3526 - 3547

Published: Jan. 1, 2024

Immunotherapy has demonstrated its potential to improve the prognosis of patients with hepatocellular carcinoma (HCC); however, patients' responses immunotherapy vary a lot. A comparative analysis tumor microenvironment (TME) in responders and non-responders is expected unveil mechanisms responsible for resistance provide treatment targets.

Language: Английский

Citations

4

Phenotypic and spatial heterogeneity of CD8+ tumour infiltrating lymphocytes DOI Creative Commons

Yikan Sun,

Eloy Yinwang, Shengdong Wang

et al.

Molecular Cancer, Journal Year: 2024, Volume and Issue: 23(1)

Published: Sept. 9, 2024

Language: Английский

Citations

4

Tissue‐resident memory T cells in diseases and therapeutic strategies DOI Creative Commons
Daoyuan Xie, Guanting Lu,

Gang Mai

et al.

MedComm, Journal Year: 2025, Volume and Issue: 6(1)

Published: Jan. 1, 2025

Abstract Tissue‐resident memory T (T RM ) cells are crucial components of the immune system that provide rapid, localized responses to recurrent pathogens at mucosal and epithelial barriers. Unlike circulating cells, located within peripheral tissues, they play vital roles in antiviral, antibacterial, antitumor immunity. Their unique retention activation mechanisms, including interactions with local expression adhesion molecules, enable their persistence immediate functionality diverse tissues. Recent advances have revealed important chronic inflammation, autoimmunity, cancer, illuminating both protective pathogenic potential. This review synthesizes current knowledge on cells’ molecular signatures, maintenance pathways, functional dynamics across different We also explore other such as B macrophages, dendritic highlighting complex network underpins efficacy surveillance response. Understanding nuanced regulation is essential for developing targeted therapeutic strategies, vaccines immunotherapies, enhance while mitigating adverse effects. Insights into biology hold promise innovative treatments infectious diseases, autoimmune conditions.

Language: Английский

Citations

0

Chicken adipose tissue is differentially involved in primary and secondary regional immune response to NDV through miR-20a-5p-NR4A3 pathway DOI
Yi Jiang, Rui Zhang, Xinxin Xu

et al.

Veterinary Immunology and Immunopathology, Journal Year: 2025, Volume and Issue: 280, P. 110884 - 110884

Published: Jan. 13, 2025

Language: Английский

Citations

0

Metabolites and metabolic pathway reactions links to sensitization of immunotherapy in pan-cancer DOI Creative Commons

Shaobo Yu,

Yuzhen Gao, Feng Zhao

et al.

Deleted Journal, Journal Year: 2025, Volume and Issue: 33(1), P. 200933 - 200933

Published: Jan. 14, 2025

Metabolic features are crucial in tumor immune interactions, but their relationship with antitumor responses is not yet fully understood. This study used Mendelian randomization analysis to identify the causal relationships between blood metabolites and cells evaluate effects of metabolic pathways reactions on various cancers. Levels 156 exhibited significant associations selected cells. enrichment indicated laurate, propionyl-carnitine, carnitine l-acetylcarnitine enriched fatty acid (FA) metabolism pathways. These significantly correlated CD8+ T cell function signatures environment favor better prognostic outcomes. contributing immunotherapy were identified establish immuno-metabolic reaction score (IMRS). IMRS infiltration levels signature scores either 10× Visium spatial transcriptomic or RNA-seq samples. Finally, could predict favorable survival outcomes different cancer patients treated immunotherapy. Our revealed a link certain related landscape functions. results promote accurate stratification before treatment improve efficacy

Language: Английский

Citations

0

Tissue-resident immune cells: from defining characteristics to roles in diseases DOI Creative Commons
Jia Li, Xiao Chu, Chunxiang Li

et al.

Signal Transduction and Targeted Therapy, Journal Year: 2025, Volume and Issue: 10(1)

Published: Jan. 16, 2025

Tissue-resident immune cells (TRICs) are a highly heterogeneous and plastic subpopulation of that reside in lymphoid or peripheral tissues without recirculation. These endowed with notably distinct capabilities, setting them apart from their circulating leukocyte counterparts. Many studies demonstrate complex roles both health disease, involving the regulation homeostasis, protection, destruction. The advancement tissue-resolution technologies, such as single-cell sequencing spatiotemporal omics, provides deeper insights into cell morphology, characteristic markers, dynamic transcriptional profiles TRICs. Currently, reported TRIC population includes tissue-resident T cells, memory B (BRM) innate lymphocytes, macrophages, neutrophils (TRNs), mast but unignorably existence TRNs is controversial. Previous focus on one specific diseases, however, origins, developmental trajectories, intercellular cross-talks every type not fully summarized. In addition, systemic overview TRICs disease progression development parallel therapeutic strategies lacking. Here, we describe function characteristics all types major diseases. We shed light how to harness offer new targets present burning questions this field.

Language: Английский

Citations

0

The XCL1–XCR1 axis supports intestinal tissue residency and antitumor immunity DOI
Amir Ferry, K Mempel, Alexander Monell

et al.

The Journal of Experimental Medicine, Journal Year: 2025, Volume and Issue: 222(2)

Published: Jan. 22, 2025

Tissue-resident memory T cells (TRM) provide frontline protection against pathogens and emerging malignancies. Tumor-infiltrating lymphocytes (TIL) with TRM features are associated improved clinical outcomes. However, the cellular interactions that program differentiation function not well understood. Using murine genetic models targeted spatial transcriptomics, we found CD8+ cell–derived chemokine XCL1 is critical for formation conventional DC1 (cDC1) supported positioning of intestinal during acute viral infection. In tumors, enforced Xcl1 expression by antigen-specific promoted intratumoral cDC1 accumulation cell persistence, leading to overall survival. Notably, analysis human TIL revealed conserved XCL2. Thus, have shown XCL1–XCR1 axis plays a non-cell autonomous role in guiding tumor control.

Language: Английский

Citations

0

Unveiling fundamental principles: visualizing T cell immunity with explainable artificial intelligence DOI Creative Commons
Liyun Tu,

Aoyu Xu,

Hantao Lou

et al.

Medicine Plus, Journal Year: 2025, Volume and Issue: unknown, P. 100072 - 100072

Published: Jan. 1, 2025

Language: Английский

Citations

0

GLP1 alleviates oleic acid-propelled lipocalin-2 generation by tumor-infiltrating CD8+ T cells to reduce polymorphonuclear MDSC recruitment and enhances viral immunotherapy in pancreatic cancer DOI
Jingyi Wu, Qian Peng, Yifeng Han

et al.

Cellular and Molecular Immunology, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 5, 2025

Language: Английский

Citations

0