Extensive phylogenies of human development inferred from somatic mutations DOI Creative Commons
Tim H. H. Coorens, Luiza Moore, Philip S. Robinson

et al.

Nature, Journal Year: 2021, Volume and Issue: 597(7876), P. 387 - 392

Published: Aug. 25, 2021

Starting from the zygote, all cells in human body continuously acquire mutations. Mutations shared between different imply a common progenitor and are thus naturally occurring markers for lineage tracing1,2. Here we reconstruct extensive phylogenies of normal tissues three adult individuals using whole-genome sequencing 511 laser capture microdissections. Reconstructed embryonic progenitors same generation phylogeny often contribute to extents body. The degree this asymmetry varies individuals, with ratios two reconstructed daughter zygote ranging 60:40 93:7. Asymmetries pervade subsequent generations can differ individual. resolve spatial patterning tissues, revealing contiguous patches of, on average, 301 crypts colonic epithelium derived most recent cell also effect brain development. Using data ten additional men, investigated developmental split soma germline, results suggesting an extraembryonic contribution primordial germ cells. This research demonstrates that, despite reaching ultimate tissue patterns, early bottlenecks commitments lead substantial variation patterns both within individuals. Somatic mutations obtained microdissected biopsies used these back zygote.

Language: Английский

Lung adenocarcinoma promotion by air pollutants DOI
William Hill, Emilia L. Lim, Clare E. Weeden

et al.

Nature, Journal Year: 2023, Volume and Issue: 616(7955), P. 159 - 167

Published: April 5, 2023

Language: Английский

Citations

434

Somatic mutation landscapes at single-molecule resolution DOI
Federico Abascal, Luke M. R. Harvey, Emily Mitchell

et al.

Nature, Journal Year: 2021, Volume and Issue: 593(7859), P. 405 - 410

Published: April 28, 2021

Language: Английский

Citations

372

Clonal dynamics of haematopoiesis across the human lifespan DOI Creative Commons
Emily Mitchell, Michael Spencer Chapman, Nicholas Williams

et al.

Nature, Journal Year: 2022, Volume and Issue: 606(7913), P. 343 - 350

Published: June 1, 2022

Abstract Age-related change in human haematopoiesis causes reduced regenerative capacity 1 , cytopenias 2 immune dysfunction 3 and increased risk of blood cancer 4–6 but the reason for such abrupt functional decline after 70 years age remains unclear. Here we sequenced 3,579 genomes from single cell-derived colonies haematopoietic cells across 10 subjects 0 to 81 age. Haematopoietic stem or multipotent progenitors (HSC/MPPs) accumulated a mean 17 mutations per year birth lost 30 base pairs telomere length. Haematopoiesis adults less than 65 was massively polyclonal, with high clonal diversity stable population 20,000–200,000 HSC/MPPs contributing evenly production. By contrast, individuals aged over 75 showed profoundly decreased diversity. In each older subjects, 30–60% accounted by 12–18 independent clones, 1–34% Most clones had begun their expansion before subject 40 old, only 22% known driver mutations. Genome-wide selection analysis estimated that between 34 12 non-synonymous were drivers, accruing at constant rates throughout life, affecting more genes identified cancers. Loss Y chromosome conferred selective benefits males. Simulations haematopoiesis, cell size acquisition conferring moderate fitness benefits, entirely explained structure elderly. Rapidly decreasing is universal feature humans, underpinned pervasive positive acting on many currently identified.

Language: Английский

Citations

336

Spatial architecture of the immune microenvironment orchestrates tumor immunity and therapeutic response DOI Creative Commons
Tong‐Ming Fu, Lei-Jie Dai,

Song‐Yang Wu

et al.

Journal of Hematology & Oncology, Journal Year: 2021, Volume and Issue: 14(1)

Published: June 25, 2021

Tumors are not only aggregates of malignant cells but also well-organized complex ecosystems. The immunological components within tumors, termed the tumor immune microenvironment (TIME), have long been shown to be strongly related development, recurrence and metastasis. However, conventional studies that underestimate potential value spatial architecture TIME unable completely elucidate its complexity. As innovative high-flux high-dimensional technologies emerge, researchers can more feasibly accurately detect depict TIME. These findings improved our understanding complexity role in biology. In this review, we first epitomized some representative emerging study categorized description methods used characterize these structures. Then, determined functions biology effects gradient extracellular nonspecific chemicals (ENSCs) on We discussed clinical architectures TIME, as well current limitations future prospects novel field. This review will bring an dimension ecosystem research, attention promote application research practice.

Language: Английский

Citations

330

Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics DOI
Anna S. Nam, Ronan Chaligné, Dan A. Landau

et al.

Nature Reviews Genetics, Journal Year: 2020, Volume and Issue: 22(1), P. 3 - 18

Published: Aug. 17, 2020

Language: Английский

Citations

314

The mutational landscape of human somatic and germline cells DOI
Luiza Moore, Alex Cagan, Tim H. H. Coorens

et al.

Nature, Journal Year: 2021, Volume and Issue: 597(7876), P. 381 - 386

Published: Aug. 25, 2021

Language: Английский

Citations

281

Extensive heterogeneity in somatic mutation and selection in the human bladder DOI
Andrew Lawson, Federico Abascal, Tim H. H. Coorens

et al.

Science, Journal Year: 2020, Volume and Issue: 370(6512), P. 75 - 82

Published: Oct. 2, 2020

Genetic profiles of the bladder Depending on environment individual, human can be exposed to carcinogens as they are flushed through body. Lawson et al. and Li examined genetic composition laser-dissected microbiopsies from normal cancer cells collected urothelium, a specialized epithelium lining lower urinary tract (see Perspective by Rozen). These complementary studies identified mutational landscape urothelium various sequencing strategies high heterogeneity within between individuals tumors. Both related specific such aristolochic acid molecules found in tobacco. present comprehensive description diverse health disease, unraveling positive selection for cancer-causing mutations, diversity processes, large differences across individuals. Science , this issue p. 75 82 ; see also 34

Language: Английский

Citations

266

Mutational signatures: emerging concepts, caveats and clinical applications DOI
Ching Chiek Koh, Andrea Degasperi, Xueqing Zou

et al.

Nature reviews. Cancer, Journal Year: 2021, Volume and Issue: 21(10), P. 619 - 637

Published: July 27, 2021

Language: Английский

Citations

217

Promises and challenges of adoptive T-cell therapies for solid tumours DOI Creative Commons
Matteo Morotti, Ashwag Albukhari, Abdulkhaliq Alsaadi

et al.

British Journal of Cancer, Journal Year: 2021, Volume and Issue: 124(11), P. 1759 - 1776

Published: March 29, 2021

Abstract Cancer is a leading cause of death worldwide and, despite new targeted therapies and immunotherapies, many patients with advanced-stage- or high-risk cancers still die, owing to metastatic disease. Adoptive T-cell therapy, involving the autologous allogeneic transplant tumour-infiltrating lymphocytes genetically modified T cells expressing novel receptors chimeric antigen receptors, has shown promise in treatment cancer patients, durable responses some cases, cure. Technological advances genomics, computational biology, immunology cell manufacturing have brought aspiration individualised for closer reality. This era cell-based therapeutics challenges traditional standards therapeutic interventions provides opportunities paradigm shift our approach therapy. Invited speakers at 2020 symposium discussed three areas—cancer cell-therapy manufacturing—that are essential effective translation solid malignancies. Key been made understanding genetic intratumour heterogeneity, strategies accurately identify neoantigens, overcome exhaustion circumvent tumour immunosuppression after infusion being developed. Advances cell-manufacturing approaches that potential establish cell-therapies as credible options. face but hold great improving clinical outcomes tumours.

Language: Английский

Citations

206

Clonal expansion in non-cancer tissues DOI
Nobuyuki Kakiuchi, Seishi Ogawa

Nature reviews. Cancer, Journal Year: 2021, Volume and Issue: 21(4), P. 239 - 256

Published: Feb. 24, 2021

Language: Английский

Citations

193