Proceedings of the National Academy of Sciences,
Journal Year:
2023,
Volume and Issue:
120(34)
Published: Aug. 14, 2023
TAR
DNA-binding
protein
43
(TDP-43)
is
involved
in
key
processes
RNA
metabolism
and
frequently
implicated
many
neurodegenerative
diseases,
including
amyotrophic
lateral
sclerosis
frontotemporal
dementia.
The
prion-like,
disordered
C-terminal
domain
(CTD)
of
TDP-43
aggregation-prone,
can
undergo
liquid-liquid
phase
separation
(LLPS)
isolation,
critical
for
(PS)
the
full-length
under
physiological
conditions.
While
a
short
conserved
helical
region
(CR,
spanning
residues
319-341)
promotes
oligomerization
essential
LLPS,
aromatic
flanking
regions
(QN-rich,
IDR1/2)
are
also
found
to
play
role
PS
aggregation.
Compared
with
other
phase-separating
proteins,
CTD
has
notably
distinct
sequence
composition
aliphatic
such
as
methionine
leucine.
Aliphatic
were
previously
suggested
modulate
apparent
viscosity
resulting
phases,
but
their
direct
contribution
toward
been
relatively
ignored.
Using
multiscale
simulations
coupled
vitro
saturation
concentration
(csat)
measurements,
we
identified
importance
while
suggesting
an
promoting
single-chain
compaction
LLPS.
Surprisingly,
NMR
experiments
showed
that
transient
interactions
involving
phenylalanine
directly
enhance
site-specific,
CR-mediated
intermolecular
association.
Overall,
our
work
highlights
underappreciated
mode
biomolecular
recognition,
wherein
both
site-specific
hydrophobic
act
synergistically
drive
disordered,
low-complexity
domain.
Abundant
filamentous
inclusions
of
tau
are
characteristic
more
than
20
neurodegenerative
diseases
that
collectively
termed
tauopathies.
Electron
cryo-microscopy
(cryo-EM)
structures
amyloid
filaments
from
human
brain
revealed
distinct
folds
characterise
many
different
diseases.
A
lack
laboratory-based
model
systems
to
generate
these
has
hampered
efforts
uncover
the
molecular
mechanisms
underlie
Here,
we
report
in
vitro
assembly
conditions
with
recombinant
replicate
both
Alzheimer's
disease
(AD)
and
chronic
traumatic
encephalopathy
(CTE),
as
determined
by
cryo-EM.
Our
results
suggest
post-translational
modifications
modulate
filament
assembly,
previously
observed
additional
densities
AD
CTE
may
arise
presence
inorganic
salts,
like
phosphates
sodium
chloride.
In
into
disease-relevant
will
facilitate
studies
determine
their
roles
diseases,
well
development
compounds
specifically
bind
or
prevent
formation.
Nature,
Journal Year:
2022,
Volume and Issue:
605(7909), P. 310 - 314
Published: March 28, 2022
Abstract
Many
age-dependent
neurodegenerative
diseases,
such
as
Alzheimer’s
and
Parkinson’s,
are
characterized
by
abundant
inclusions
of
amyloid
filaments.
Filamentous
the
proteins
tau,
amyloid-β,
α-synuclein
transactive
response
DNA-binding
protein
(TARDBP;
also
known
TDP-43)
most
common
1,2
.
Here
we
used
structure
determination
cryogenic
electron
microscopy
to
show
that
residues
120–254
lysosomal
type
II
transmembrane
106B
(TMEM106B)
form
filaments
in
human
brains.
We
determined
structures
TMEM106B
from
a
number
brain
regions
22
individuals
with
deposits,
including
those
resulting
sporadic
inherited
tauopathies,
amyloid-β
amyloidoses,
synucleinopathies
TDP-43
proteinopathies,
well
frontal
cortex
3
normal
neurology
no
or
only
few
deposits.
observed
three
folds,
clear
relationships
between
folds
diseases.
correlated
presence
29-kDa
sarkosyl-insoluble
fragment
globular
cytoplasmic
inclusions,
detected
an
antibody
specific
carboxy-terminal
region
TMEM106B.
The
identification
brains
older,
but
not
younger,
indicates
they
manner.
Cell,
Journal Year:
2022,
Volume and Issue:
185(8), P. 1346 - 1355.e15
Published: March 4, 2022
Misfolding
and
aggregation
of
disease-specific
proteins,
resulting
in
the
formation
filamentous
cellular
inclusions,
is
a
hallmark
neurodegenerative
disease
with
characteristic
filament
structures,
or
conformers,
defining
each
proteinopathy.
Here
we
show
that
previously
unsolved
amyloid
fibril
composed
135
amino
acid
C-terminal
fragment
TMEM106B
common
finding
distinct
human
diseases,
including
cases
characterized
by
abnormal
TDP-43,
tau,
α-synuclein
protein.
A
combination
cryoelectron
microscopy
mass
spectrometry
was
used
to
solve
structures
fibrils
at
resolution
2.7
Å
from
postmortem
brain
tissue
afflicted
frontotemporal
lobar
degeneration
TDP-43
pathology
(FTLD-TDP,
n
=
8),
progressive
supranuclear
palsy
(PSP,
2),
dementia
Lewy
bodies
(DLB,
1).
The
commonality
abundant
TMEM106B,
lysosomal/endosomal
protein,
broad
range
debilitating
disorders
indicates
shared
fibrillization
pathway
may
initiate
accelerate
neurodegeneration.
Frontiers in Molecular Biosciences,
Journal Year:
2022,
Volume and Issue:
9
Published: Feb. 2, 2022
Liquid-liquid
phase
separation
of
RNA-binding
proteins
mediates
the
formation
numerous
membraneless
organelles
with
essential
cellular
function.
However,
aberrant
transition
these
leads
to
insoluble
protein
aggregates,
which
are
pathological
hallmarks
neurodegenerative
diseases
including
ALS
and
FTD.
TDP-43
FUS
two
such
that
mislocalize
aggregate
in
patients
They
have
similar
domain
structures
provide
multivalent
interactions
driving
their
vitro
environment.
In
this
article,
we
review
factors
mediate
regulate
FUS.
We
also
evidences
connect
property
functional
roles
cells.
Aberrant
aggregation
disrupts
regular
cell
Therefore,
restoration
could
be
beneficial
for
neuronal
discuss
possible
mechanisms
while
reviewing
methods
currently
being
explored
as
potential
therapeutic
strategies
mitigate
npj Parkinson s Disease,
Journal Year:
2022,
Volume and Issue:
8(1)
Published: July 22, 2022
Abstract
Parkinson’s
disease
(PD),
the
second
most
common
progressive
neurodegenerative
disease,
develops
and
progresses
for
10–15
years
before
clinical
diagnostic
symptoms
of
are
manifested.
Furthermore,
several
aspects
PD
pathology
overlap
with
other
diseases
(NDDs)
linked
to
alpha-synuclein
(aSyn)
aggregation,
also
called
synucleinopathies.
Therefore,
there
is
an
urgent
need
discover
validate
early
prognostic
markers
that
reflect
pathophysiology,
progression,
severity,
potential
differences
in
mechanisms
between
NDDs.
The
close
association
aSyn
development
synucleinopathies,
along
identification
species
biological
fluids,
has
led
increasing
interest
as
biomarkers
diagnosis
differentiate
it
from
In
this
review,
we
(1)
provide
overview
progress
toward
mapping
distribution
brain,
peripheral
tissues,
fluids;
(2)
present
comparative
critical
analysis
previous
studies
measured
total
well
such
modified
aggregated
forms
different
(3)
highlight
conceptual
technical
gaps
challenges
could
hinder
validation
reliable
biomarkers;
(4)
outline
a
series
recommendations
address
these
challenges.
Finally,
propose
combined
biomarker
approach
based
on
integrating
biochemical,
aggregation
structure
features
aSyn,
addition
neurodegeneration.
We
believe
capturing
diversity
essential
develop
robust
assays
diagnostics
detection,
patient
stratification,
monitoring
differentiation
This
transform
trial
design
implementation,
accelerate
new
therapies,
improve
decisions
treatment
strategies.
Nature Chemistry,
Journal Year:
2023,
Volume and Issue:
15(10), P. 1340 - 1349
Published: Sept. 25, 2023
The
maturation
of
liquid-like
protein
condensates
into
amyloid
fibrils
has
been
associated
with
several
neurodegenerative
diseases.
However,
the
molecular
mechanisms
underlying
this
liquid-to-solid
transition
have
remained
largely
unclear.
Here
we
analyse
formation
mediated
by
condensation
low-complexity
domain
hnRNPA1,
a
involved
in
amyotrophic
lateral
sclerosis.
We
show
that
phase
separation
and
fibrillization
are
connected
but
distinct
processes
modulated
different
regions
sequence.
By
monitoring
spatial
temporal
evolution
demonstrate
does
not
occur
homogeneously
inside
droplets
is
promoted
at
interface
condensates.
further
coating
surfactant
molecules
inhibits
fibril
formation.
Our
results
reveal
biomolecular
hnRNPA1
promotes
formation,
therefore
suggesting
interfaces
as
potential
novel
therapeutic
target
against
aberrant
amyloids
condensation.
Nature,
Journal Year:
2023,
Volume and Issue:
625(7993), P. 119 - 125
Published: Nov. 29, 2023
Abstract
Intermediate
species
in
the
assembly
of
amyloid
filaments
are
believed
to
play
a
central
role
neurodegenerative
diseases
and
may
constitute
important
targets
for
therapeutic
intervention
1,2
.
However,
structural
information
about
intermediate
has
been
scarce
molecular
mechanisms
by
which
amyloids
assemble
remain
largely
unknown.
Here
we
use
time-resolved
cryogenic
electron
microscopy
study
vitro
recombinant
truncated
tau
(amino
acid
residues
297–391)
into
paired
helical
Alzheimer’s
disease
or
chronic
traumatic
encephalopathy
3
We
report
formation
shared
first
filament,
with
an
ordered
core
comprising
302–316.
Nuclear
magnetic
resonance
indicates
that
same
adopt
rigid,
β-strand-like
conformations
monomeric
tau.
At
later
time
points,
disappears
observe
many
different
filaments,
structures
depend
on
reaction
conditions.
end
both
reactions,
most
disappear
cores
as
those
from
human
brains
remain.
Our
results
provide
insights
processes
primary
secondary
nucleation
assembly,
implications
design
new
therapies.
Nature,
Journal Year:
2023,
Volume and Issue:
620(7975), P. 898 - 903
Published: Aug. 2, 2023
Abstract
The
abnormal
assembly
of
TAR
DNA-binding
protein
43
(TDP-43)
in
neuronal
and
glial
cells
characterizes
nearly
all
cases
amyotrophic
lateral
sclerosis
(ALS)
around
half
frontotemporal
lobar
degeneration
(FTLD)
1,2
.
A
causal
role
for
TDP-43
neurodegeneration
is
evidenced
by
dominantly
inherited
missense
mutations
TARDBP
,
the
gene
encoding
TDP-43,
that
promote
give
rise
to
ALS
FTLD
3–7
At
least
four
types
(A–D)
with
pathology
(FTLD-TDP)
are
defined
distinct
brain
distributions
assembled
associated
different
clinical
presentations
dementia
8
We
previously
showed,
using
cryo-electron
microscopy,
assembles
into
amyloid
filaments
type
B
FTLD-TDP
9
However,
structures
without
remained
unknown.
Here
we
report
microscopy
from
brains
three
individuals
most
common
FTLD-TDP,
A.
formed
a
new
fold
was
same
across
individuals,
indicating
this
may
characterize
FTLD-TDP.
resembles
chevron
badge
unlike
double-spiral-shaped
establishing
filament
folds
neurodegenerative
conditions.
structures,
combination
mass
spectrometry,
led
identification
two
post-translational
modifications
citrullination
monomethylation
R293,
indicate
they
facilitate
formation
observed
structural
variation
individual
filaments.
will
guide
mechanistic
studies
assembly,
as
well
development
diagnostic
therapeutic
compounds
proteinopathies.