Science,
Journal Year:
2024,
Volume and Issue:
384(6698)
Published: May 23, 2024
Nucleotide
changes
in
gene
regulatory
elements
are
important
determinants
of
neuronal
development
and
diseases.
Using
massively
parallel
reporter
assays
primary
human
cells
from
mid-gestation
cortex
cerebral
organoids,
we
interrogated
the
cis-regulatory
activity
102,767
open
chromatin
regions,
including
thousands
sequences
with
cell
type-specific
accessibility
variants
associated
brain
regulation.
In
cells,
identified
46,802
active
enhancer
164
that
alter
activity.
Activity
was
comparable
organoids
suggesting
provide
an
adequate
model
for
developing
cortex.
deep
learning
decoded
sequence
basis
upstream
regulators
This
work
establishes
a
comprehensive
catalog
functional
development.
Signal Transduction and Targeted Therapy,
Journal Year:
2024,
Volume and Issue:
9(1)
Published: Aug. 28, 2024
Abstract
Hyperuricemia,
characterized
by
elevated
levels
of
serum
uric
acid
(SUA),
is
linked
to
a
spectrum
commodities
such
as
gout,
cardiovascular
diseases,
renal
disorders,
metabolic
syndrome,
and
diabetes,
etc.
Significantly
impairing
the
quality
life
for
those
affected,
prevalence
hyperuricemia
an
upward
trend
globally,
especially
in
most
developed
countries.
UA
possesses
multifaceted
role,
antioxidant,
pro-oxidative,
pro-inflammatory,
nitric
oxide
modulating,
anti-aging,
immune
effects,
which
are
significant
both
physiological
pathological
contexts.
The
equilibrium
circulating
urate
hinges
on
interplay
between
production
excretion,
delicate
balance
orchestrated
transporter
functions
across
various
epithelial
tissues
cell
types.
While
existing
research
has
identified
involvement
numerous
biological
processes
signaling
pathways,
precise
mechanisms
connecting
disease
etiology
remain
be
fully
elucidated.
In
addition,
influence
genetic
susceptibilities
environmental
determinants
calls
detailed
nuanced
examination.
This
review
compiles
data
from
global
epidemiological
studies
clinical
practices,
exploring
foundations
transporters
depth.
Furthermore,
we
uncover
complex
induced
inflammation
influences
individuals
with
association
its
relative
disease,
offering
foundation
innovative
therapeutic
approaches
advanced
pharmacological
strategies.
American Journal of Psychiatry,
Journal Year:
2022,
Volume and Issue:
179(11), P. 833 - 843
Published: Sept. 7, 2022
Objective:
Mental
disorders
are
heritable
and
polygenic,
genome-wide
genetic
correlations
(rg)
have
indicated
widespread
shared
risk
across
multiple
related
traits,
mirroring
their
overlapping
clinical
characteristics.
However,
rg
may
underestimate
the
underpinnings
of
mental
traits
because
it
does
not
differentiate
mixtures
concordant
discordant
effects
from
an
absence
overlap.
Using
novel
statistical
genetics
tools,
authors
aimed
to
evaluate
overlap
between
when
accounting
for
mixed
effect
directions.
Methods:
The
applied
bivariate
causal
mixture
model
(MiXeR)
summary
statistics
four
disorders,
height
association
studies
(Ns
ranged
53,293
766,345).
MiXeR
estimated
number
“causal”
variants
a
given
trait
(“polygenicity”),
correlation
(rgs).
Local
was
investigated
using
LAVA.
Results:
Among
ADHD
least
polygenic
(5.6K
variants),
followed
by
bipolar
disorder
(8.6K),
schizophrenia
(9.6K),
depression
(14.5K).
Most
were
(4.4K–9.3K)
(5.2K–12.8K),
but
with
disorder-specific
variations
in
rgs.
Overlap
small
(0.7K–1.1K).
estimates
correlated
LAVA
local
(r=0.88,
p<0.001).
Conclusions:
There
is
extensive
directions
few
variants.
This
suggests
that
predominantly
differentiated
divergent
distributions
pleiotropic
rather
than
represents
conceptual
advance
our
understanding
landscape
architecture
which
inform
discovery,
biological
characterization,
nosology,
prediction.
PLoS Genetics,
Journal Year:
2023,
Volume and Issue:
19(2), P. e1010624 - e1010624
Published: Feb. 7, 2023
Polygenic
risk
scores
(PRSs)
have
been
among
the
leading
advances
in
biomedicine
recent
years.
As
a
proxy
of
genetic
liability,
PRSs
are
utilised
across
multiple
fields
and
applications.
While
numerous
statistical
machine
learning
methods
developed
to
optimise
their
predictive
accuracy,
these
typically
distil
liability
single
number
based
on
aggregation
an
individual’s
genome-wide
alleles.
This
results
key
loss
information
about
profile,
which
could
be
critical
given
functional
sub-structure
genome
heterogeneity
complex
disease.
In
this
manuscript,
we
introduce
‘pathway
polygenic’
paradigm
disease
risk,
liabilities
underlie
diseases,
rather
than
liability.
We
describe
method
accompanying
software,
PRSet,
for
computing
analysing
pathway-based
PRSs,
polygenic
calculated
genomic
pathways
each
individual.
evaluate
potential
pathway
two
distinct
ways,
creating
major
sections:
(1)
first
section,
benchmark
PRSet
as
enrichment
tool,
evaluating
its
capacity
capture
GWAS
signal
pathways.
find
that
target
sample
sizes
>10,000
individuals,
similar
power
MAGMA
LD
score
regression,
with
advantage
providing
individual-level
estimates
-opening
up
range
PRS
applications,
(2)
second
performance
stratification.
show
using
supervised
stratification
approach,
(computed
by
PRSet)
outperform
standard
C+T
lassosum)
classifying
subtypes
20
21
scenarios
tested.
definition
annotation
becomes
increasingly
refined,
expect
offer
insights
into
treatment
response,
generate
biologically
tractable
therapeutic
targets
from
signal,
and,
ultimately,
provide
powerful
path
precision
medicine.
BMJ,
Journal Year:
2023,
Volume and Issue:
unknown, P. e073591 - e073591
Published: April 12, 2023
Abstract
Bipolar
disorders
(BDs)
are
recurrent
and
sometimes
chronic
of
mood
that
affect
around
2%
the
world’s
population
encompass
a
spectrum
between
severe
elevated
excitable
states
(mania)
to
dysphoria,
low
energy,
despondency
depressive
episodes.
The
illness
commonly
starts
in
young
adults
is
leading
cause
disability
premature
mortality.
clinical
manifestations
bipolar
disorder
can
be
markedly
varied
within
individuals
across
their
lifespan.
Early
diagnosis
challenging
misdiagnoses
frequent,
potentially
resulting
missed
early
intervention
increasing
risk
iatrogenic
harm.
Over
15
approved
treatments
exist
for
various
phases
disorder,
but
outcomes
often
suboptimal
owing
insufficient
efficacy,
side
effects,
or
lack
availability.
Lithium,
first
treatment
continues
most
effective
drug
overall,
although
full
remission
only
seen
subset
patients.
Newer
atypical
antipsychotics
increasingly
being
found
depression;
however,
long
term
tolerability
safety
uncertain.
For
many
with
combination
therapy
adjunctive
psychotherapy
might
necessary
treat
symptoms
different
illness.
Several
classes
medications
treating
predicting
which
medication
likely
tolerable
not
yet
possible.
As
pathophysiological
insights
into
causes
revealed,
new
era
targeted
aimed
at
causal
mechanisms,
they
pharmacological
psychosocial,
will
hopefully
developed.
time
being,
judgment,
shared
decision
making,
empirical
follow-up
remain
essential
elements
care.
This
review
provides
an
overview
features,
diagnostic
subtypes,
major
modalities
available
people
highlighting
recent
advances
ongoing
therapeutic
challenges.
Neuron,
Journal Year:
2023,
Volume and Issue:
111(6), P. 857 - 873.e8
Published: Jan. 13, 2023
Using
machine
learning
(ML),
we
interrogated
the
function
of
all
human-chimpanzee
variants
in
2,645
human
accelerated
regions
(HARs),
finding
43%
HARs
have
with
large
opposing
effects
on
chromatin
state
and
14%
neurodevelopmental
enhancer
activity.
This
pattern,
consistent
compensatory
evolution,
was
confirmed
using
massively
parallel
reporter
assays
chimpanzee
neural
progenitor
cells.
The
species-specific
activity
accurately
predicted
from
presence
absence
transcription
factor
footprints
each
species.
Despite
these
striking
cis
effects,
a
given
HAR
sequence
nearly
identical
suggests
that
did
not
evolve
to
compensate
for
changes
trans
environment
but
instead
altered
their
ability
bind
factors
present
both
Thus,
ML
prioritized
functional
neurodevelopment
revealed
an
unexpected
reason
why
may
evolved
so
rapidly.
Science Advances,
Journal Year:
2023,
Volume and Issue:
9(41)
Published: Oct. 12, 2023
The
cellular
complexity
of
the
human
brain
is
established
via
dynamic
changes
in
gene
expression
throughout
development
that
mediated,
part,
by
spatiotemporal
activity
cis-regulatory
elements
(CREs).
We
simultaneously
profiled
and
chromatin
accessibility
45,549
cortical
nuclei
across
six
broad
developmental
time
points
from
fetus
to
adult.
identified
cell
type-specific
domains
which
highly
correlated
with
expression.
Differentiation
pseudotime
trajectory
analysis
indicates
at
CREs
precedes
transcription
structure
play
a
critical
role
neuronal
lineage
commitment.
In
addition,
we
mapped
temporally
specific
genetic
loci
implicated
neuropsychiatric
traits,
including
schizophrenia
bipolar
disorder.
Together,
our
results
describe
complex
regulation
composition
stages
determination
shed
light
on
impact
alterations
disease.
Nature,
Journal Year:
2024,
Volume and Issue:
627(8004), P. 604 - 611
Published: March 6, 2024
Abstract
Human
brains
vary
across
people
and
over
time;
such
variation
is
not
yet
understood
in
cellular
terms.
Here
we
describe
a
relationship
between
people’s
cortical
neurons
astrocytes.
We
used
single-nucleus
RNA
sequencing
to
analyse
the
prefrontal
cortex
of
191
human
donors
aged
22–97
years,
including
healthy
individuals
with
schizophrenia.
Latent-factor
analysis
these
data
revealed
that,
whose
more
strongly
expressed
genes
encoding
synaptic
components,
astrocytes
distinct
functions
for
synthesizing
cholesterol,
an
astrocyte-supplied
component
membranes.
call
this
neuron
astrocyte
program
(SNAP).
In
schizophrenia
ageing—two
conditions
that
involve
declines
cognitive
flexibility
plasticity
1,2
—cells
divested
from
SNAP:
astrocytes,
glutamatergic
(excitatory)
GABAergic
(inhibitory)
all
showed
reduced
SNAP
expression
corresponding
degrees.
The
astrocytic
neuronal
components
both
involved
which
genetic
risk
factors
were
concentrated.
SNAP,
varies
quantitatively
even
among
similar
age,
may
underlie
many
aspects
normal
interindividual
differences
be
important
point
convergence
multiple
kinds
pathophysiology.
Molecular Psychiatry,
Journal Year:
2023,
Volume and Issue:
28(7), P. 3121 - 3132
Published: May 18, 2023
Abstract
Genome-wide
association
studies
(GWAS)
of
Alzheimer’s
disease
are
predominantly
carried
out
in
European
ancestry
individuals
despite
the
known
variation
genetic
architecture
and
prevalence
across
global
populations.
We
leveraged
published
GWAS
summary
statistics
from
European,
East
Asian,
African
American
populations,
an
additional
a
Caribbean
Hispanic
population
using
previously
reported
genotype
data
to
perform
largest
multi-ancestry
meta-analysis
related
dementias
date.
This
method
allowed
us
identify
two
independent
novel
disease-associated
loci
on
chromosome
3.
also
diverse
haplotype
structures
fine-map
nine
with
posterior
probability
>0.8
globally
assessed
heterogeneity
risk
factors
Additionally,
we
compared
generalizability
multi-ancestry-
single-ancestry-derived
polygenic
scores
three-way
admixed
Colombian
population.
Our
findings
highlight
importance
representation
uncovering
understanding
putative
that
contribute
dementias.