Deep learning links localized digital pathology phenotypes with transcriptional subtype and patient outcome in glioblastoma DOI Creative Commons
Thomas Roetzer-Pejrimovsky, Karl‐Heinz Nenning, Barbara Kiesel

et al.

GigaScience, Journal Year: 2024, Volume and Issue: 13

Published: Jan. 1, 2024

Abstract Background Deep learning has revolutionized medical image analysis in cancer pathology, where it had a substantial clinical impact by supporting the diagnosis and prognostic rating of cancer. Among first available digital resources field brain is glioblastoma, most common fatal At histologic level, glioblastoma characterized abundant phenotypic variability that poorly linked with patient prognosis. transcriptional 3 molecular subtypes are distinguished mesenchymal-subtype tumors being associated increased immune cell infiltration worse outcome. Results We address genotype–phenotype correlations applying an Xception convolutional neural network to discovery set 276 hematozylin eosin (H&E) slides subtype annotation independent The Cancer Genome Atlas–based validation cohort 178 cases. Using this approach, we achieve high accuracy H&E-based mapping (area under curve for classical, mesenchymal, proneural = 0.84, 0.81, 0.71, respectively; P < 0.001) regions outcome (univariable survival model 0.001, multivariable 0.01). latter were higher tumor density (P 0.001), cells decreased T-cell 0.017). Conclusions modify well-known architecture accurately map spatial distribution predictive outcome, thereby showcasing relevance artificial intelligence–enabled mining

Language: Английский

Towards a general-purpose foundation model for computational pathology DOI
Richard J. Chen, Tong Ding, Ming Y. Lu

et al.

Nature Medicine, Journal Year: 2024, Volume and Issue: 30(3), P. 850 - 862

Published: March 1, 2024

Language: Английский

Citations

205

A Multimodal Generative AI Copilot for Human Pathology DOI Creative Commons
Ming Y. Lu, Bowen Chen, Drew F. K. Williamson

et al.

Nature, Journal Year: 2024, Volume and Issue: unknown

Published: June 12, 2024

Computational pathology

Language: Английский

Citations

75

Artificial Intelligence in Oncology: Current Landscape, Challenges, and Future Directions DOI Open Access

William Lotter,

Michael J. Hassett, Nikolaus Schultz

et al.

Cancer Discovery, Journal Year: 2024, Volume and Issue: 14(5), P. 711 - 726

Published: March 21, 2024

Artificial intelligence (AI) in oncology is advancing beyond algorithm development to integration into clinical practice. This review describes the current state of field, with a specific focus on integration. AI applications are structured according cancer type and domain, focusing four most common cancers tasks detection, diagnosis, treatment. These encompass various data modalities, including imaging, genomics, medical records. We conclude summary existing challenges, evolving solutions, potential future directions for field.

Language: Английский

Citations

35

A pathologist–AI collaboration framework for enhancing diagnostic accuracies and efficiencies DOI
Zhi Huang, Eric Yang, Jeanne Shen

et al.

Nature Biomedical Engineering, Journal Year: 2024, Volume and Issue: unknown

Published: June 19, 2024

Language: Английский

Citations

10

Targeted and cytotoxic inhibitors used in the treatment of breast cancer DOI Creative Commons
Robert Roskoski

Pharmacological Research, Journal Year: 2024, Volume and Issue: unknown, P. 107534 - 107534

Published: Dec. 1, 2024

Breast cancer is the most commonly diagnosed malignancy and fifth leading cause of deaths worldwide. Surgery radiation therapy are localized therapies for early-stage metastatic breast cancer. The management determined in large part by HER2 (human epidermal growth factor receptor 2), HR (hormone receptor), ER (estrogen PR (progesterone receptor) status. Our views evolving as its molecular hallmarks examined, which now include immunohistochemical markers (ER, PR, HER2, proliferation marker protein Ki-67), genomic (BRCA1/2 PIK3CA), immunomarkers (tumor-infiltrating lymphocytes PDL1). About two-thirds malignancies HR-positive/HER2-negative; accordingly, endocrine-based a major treatment option these patients. Hormonal or endocrine includes selective estrogen modulators (SERMs) such raloxifene, tamoxifen toremifene, estrogen-receptor degraders (SERDs) including elacestrant fulvestrant, aromatase inhibitors anastrozole, letrozole, exemestane. A variety cytotoxic chemotherapeutic agents used to treat HR-negative These taxanes (docetaxel, nab-paclitaxel, paclitaxel), anthracyclines (doxorubicin, epirubicin), anti-metabolites (capecitabine, gemcitabine, fluorouracil, methotrexate), alkylating (carboplatin, cisplatin, cyclophosphamide), drugs that target microtubules (eribulin, ixabepilone, ado-trastuzumab emtansine). Patients with ER-positive tumors treated 5-10 years chemotherapy. For patients cancer, standard first-line follow-up options targeted approaches CDK4/6 inhibitors, PI3K PARP anti-PDL1 immunotherapy, depending on tumor type profile.

Language: Английский

Citations

6

The Quest for the Application of Artificial Intelligence to Whole Slide Imaging: Unique Prospective from New Advanced Tools DOI Creative Commons
Gavino Faa, Massimo Castagnola, Luca Didaci

et al.

Algorithms, Journal Year: 2024, Volume and Issue: 17(6), P. 254 - 254

Published: June 10, 2024

The introduction of machine learning in digital pathology has deeply impacted the field, especially with advent whole slide image (WSI) analysis. In this review, we tried to elucidate role algorithms diagnostic precision, efficiency, and reproducibility results. First, discuss some most used tools, including QuPath, HistoQC, HistomicsTK, provide an updated overview approaches their application pathology. Later, report how these tools may simplify automation WSI analyses, also reducing manual workload inter-observer variability. A novel aspect review is its focus on open-source presented a way that help adoption process for pathologists. Furthermore, highlight major benefits technologies, aim making practical guide clinicians seeking implement learning-based solutions specific workflows. Moreover, emphasizes crucial limitations related data quality interpretability models, giving insight into future directions research. Overall, work tries bridge gap between more recent technological progress computer science traditional clinical practice, supporting broader, yet smooth,

Language: Английский

Citations

5

Towards next-generation diagnostic pathology: AI-empowered label-free multiphoton microscopy DOI Creative Commons
Shu Wang,

Jingwen Pan,

Xiao Zhang

et al.

Light Science & Applications, Journal Year: 2024, Volume and Issue: 13(1)

Published: Sept. 14, 2024

Language: Английский

Citations

4

Targeting the initiator to activate both ferroptosis and cuproptosis for breast cancer treatment: progress and possibility for clinical application DOI Creative Commons

Murshid Imam,

Jiale Ji,

Zhijie Zhang

et al.

Frontiers in Pharmacology, Journal Year: 2025, Volume and Issue: 15

Published: Jan. 10, 2025

Breast cancer is the most commonly diagnosed worldwide. Metal metabolism pivotal for regulating cell fate and drug sensitivity in breast cancer. Iron copper are essential metal ions critical maintaining cellular function. The accumulation of iron triggers distinct death pathways, known as ferroptosis cuproptosis, respectively. Ferroptosis characterized by iron-dependent lipid peroxidation, while cuproptosis involves copper-induced oxidative stress. They increasingly recognized promising targets development anticancer drugs. Recently, compelling evidence demonstrated that interplay between plays a crucial role progression. This review elucidates converging pathways Moreover, we examined value genes associated with clinical diagnosis treatment cancer, mainly outlining potential co-targeting approach. Lastly, delve into current challenges limitations this strategy. In general, offers an overview interaction offering valuable perspectives further research treatment.

Language: Английский

Citations

0

Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence Assisted Cancer Diagnosis DOI Creative Commons

Xiaoyi Ji,

Richard Salmon,

Nita Mulliqi

et al.

Modern Pathology, Journal Year: 2025, Volume and Issue: 38(5), P. 100715 - 100715

Published: Jan. 16, 2025

Language: Английский

Citations

0

White blood cell classification using multi-hop attention graph neural networks DOI Creative Commons
Minh Ly Duc,

Petr Bilík,

Radek Martínek

et al.

Expert Systems with Applications, Journal Year: 2025, Volume and Issue: unknown, P. 126725 - 126725

Published: Feb. 1, 2025

Language: Английский

Citations

0